Wall clock time and date at job start Tue Mar 31 2020 20:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47105 * 2 1 4 4 N 1.46508 * 109.46795 * 240.00737 * 2 1 3 5 5 S 1.65598 * 119.99894 * 94.99910 * 4 2 1 6 6 O 1.42100 * 106.39857 * 178.53831 * 5 4 2 7 7 O 1.42101 * 106.40290 * 311.45580 * 5 4 2 8 8 C 1.76197 * 107.21687 * 65.00003 * 5 4 2 9 9 C 1.38659 * 119.87515 * 269.72114 * 8 5 4 10 10 C 1.38611 * 120.50113 * 179.72214 * 9 8 5 11 11 C 1.37644 * 120.24724 * 0.55889 * 10 9 8 12 12 C 1.40698 * 119.74503 * 359.72057 * 11 10 9 13 13 C 1.41396 * 120.24383 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99459 * 150.21842 * 13 12 11 15 15 C 1.39941 * 120.00349 * 330.22486 * 13 12 11 16 16 N 1.30815 * 120.00552 * 161.72350 * 15 13 12 17 17 Si 1.86802 * 119.99695 * 341.72432 * 15 13 12 18 18 H 1.48494 * 109.47289 * 95.41281 * 17 15 13 19 19 H 1.48502 * 109.46961 * 215.41131 * 17 15 13 20 20 H 1.48500 * 109.47139 * 335.41147 * 17 15 13 21 21 C 1.37597 * 119.87691 * 90.00281 * 8 5 4 22 22 C 1.50699 * 109.47198 * 120.00732 * 2 1 3 23 23 N 1.31071 * 126.65879 * 74.68367 * 22 2 1 24 24 N 1.28847 * 107.98705 * 179.89186 * 23 22 2 25 25 N 1.28741 * 109.39763 * 0.38097 * 24 23 22 26 26 N 1.29022 * 108.80573 * 359.76249 * 25 24 23 27 27 C 1.46493 * 126.43392 * 179.97438 * 26 25 24 28 28 H 1.09006 * 109.47179 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46619 * 299.99210 * 1 2 3 30 30 H 1.08997 * 109.47005 * 59.99422 * 1 2 3 31 31 H 0.97002 * 120.00005 * 274.99590 * 4 2 1 32 32 H 1.07997 * 119.74672 * 0.02562 * 9 8 5 33 33 H 1.07997 * 119.88031 * 180.25835 * 10 9 8 34 34 H 1.08002 * 120.12644 * 179.74698 * 11 10 9 35 35 H 0.96995 * 120.00755 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.12881 * 359.96816 * 21 8 5 37 37 H 1.09006 * 109.47493 * 270.02831 * 27 26 25 38 38 H 1.09006 * 109.46980 * 30.02551 * 27 26 25 39 39 H 1.09002 * 109.47221 * 150.02188 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 16 2.4121 0.1775 -2.5505 6 8 2.8775 -0.7631 -3.5086 7 8 1.3245 1.0595 -2.7921 8 6 3.7927 1.1912 -2.1371 9 6 3.5869 2.4675 -1.6358 10 6 4.6634 3.2738 -1.3009 11 6 5.9509 2.8187 -1.4739 12 6 6.1718 1.5275 -1.9873 13 6 7.4899 1.0491 -2.1688 14 1 7.6965 -0.0080 -2.0888 15 6 8.5268 1.9452 -2.4521 16 7 9.7710 1.5845 -2.2705 17 14 8.1340 3.6566 -3.0895 18 1 8.1057 4.6133 -1.9542 19 1 9.1757 4.0736 -4.0623 20 1 6.8085 3.6435 -3.7588 21 6 5.0710 0.7155 -2.3185 22 6 2.0324 -0.7106 1.2304 23 7 2.0314 -2.0040 1.4423 24 7 2.5431 -2.2170 2.6054 25 7 2.8632 -1.0925 3.1442 26 7 2.5638 -0.1397 2.3273 27 6 2.7641 1.2940 2.5519 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 2.1110 -1.6561 -1.1952 32 1 2.5801 2.8342 -1.5006 33 1 4.4916 4.2647 -0.9073 34 1 6.7883 3.4502 -1.2162 35 1 10.4897 2.2055 -2.4672 36 1 5.2291 -0.2774 -2.7129 37 1 1.8778 1.7147 3.0270 38 1 3.6286 1.4431 3.1988 39 1 2.9350 1.7910 1.5969 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364988236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:16 Heat of formation + Delta-G solvation = 38.029327 kcal Electronic energy + Delta-G solvation = -27376.948151 eV Core-core repulsion = 23448.211447 eV Total energy + Delta-G solvation = -3928.736704 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.29937 -39.71187 -38.50455 -37.82629 -36.96782 -36.64829 -35.66191 -33.27106 -32.57128 -31.89940 -30.77250 -29.28603 -27.28554 -25.79817 -24.37000 -24.12296 -22.78189 -22.52362 -20.81543 -19.76574 -19.04044 -18.37374 -18.14881 -18.06417 -17.82063 -17.06747 -16.68785 -16.31006 -15.70233 -15.53578 -15.04675 -14.81610 -14.69764 -14.60006 -14.41482 -14.06828 -13.76653 -13.69146 -13.54706 -13.38358 -13.24096 -13.21506 -13.11678 -12.91613 -12.74468 -12.59878 -12.54356 -12.17138 -12.08491 -11.87177 -11.81229 -11.60745 -11.27973 -11.12668 -10.78150 -10.02246 -9.70273 -8.98575 -6.63091 -0.68647 0.12007 0.15277 0.64199 1.00878 1.06937 1.19307 1.36194 1.42846 1.94987 2.03642 2.39279 2.56708 2.79965 3.16923 3.28340 3.36567 3.56237 3.95827 4.03051 4.17967 4.21958 4.28018 4.31211 4.34469 4.45574 4.58642 4.72648 4.77302 4.80530 4.85026 4.95141 5.04586 5.13625 5.31969 5.32256 5.41408 5.61237 5.75003 5.80940 5.99237 6.22813 6.56827 6.65974 7.45134 8.10153 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.004442 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.205872 B = 6301.758154 C = 7233.414283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.238 3.762 3 H 0.136 0.864 4 N -1.102 6.102 5 S 2.717 3.283 6 O -0.993 6.993 7 O -0.958 6.958 8 C -0.637 4.637 9 C -0.139 4.139 10 C -0.088 4.088 11 C -0.202 4.202 12 C 0.054 3.946 13 C -0.488 4.488 14 H 0.052 0.948 15 C 0.046 3.954 16 N -0.845 5.845 17 Si 0.961 3.039 18 H -0.242 1.242 19 H -0.278 1.278 20 H -0.252 1.252 21 C -0.126 4.126 22 C 0.179 3.821 23 N -0.315 5.315 24 N -0.110 5.110 25 N -0.103 5.103 26 N -0.288 5.288 27 C 0.051 3.949 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.429 0.571 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.108 0.892 35 H 0.296 0.704 36 H 0.103 0.897 37 H 0.140 0.860 38 H 0.117 0.883 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.167 7.511 7.914 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.127 3.873 3 H 0.153 0.847 4 N -0.863 5.863 5 S 2.809 3.191 6 O -0.983 6.983 7 O -0.948 6.948 8 C -0.726 4.726 9 C -0.160 4.160 10 C -0.107 4.107 11 C -0.222 4.222 12 C 0.050 3.950 13 C -0.518 4.518 14 H 0.070 0.930 15 C -0.169 4.169 16 N -0.471 5.471 17 Si 0.783 3.217 18 H -0.166 1.166 19 H -0.204 1.204 20 H -0.175 1.175 21 C -0.147 4.147 22 C -0.101 4.101 23 N -0.165 5.165 24 N -0.103 5.103 25 N -0.090 5.090 26 N -0.091 5.091 27 C -0.088 4.088 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.266 0.734 32 H 0.179 0.821 33 H 0.172 0.828 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.158 0.842 38 H 0.136 0.864 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.037 6.482 7.894 19.864 hybrid contribution 1.666 0.440 -0.291 1.748 sum -15.371 6.922 7.603 18.493 Atomic orbital electron populations 1.22397 0.89684 1.04760 1.05713 1.19484 0.96989 0.94776 0.76043 0.84664 1.55557 1.81692 1.20393 1.28653 1.01094 0.73312 0.72666 0.72064 1.93546 1.82617 1.63234 1.58926 1.93542 1.51543 1.66183 1.83486 1.30419 1.14085 1.11383 1.16677 1.20788 1.00219 0.91909 1.03044 1.21239 0.91314 1.00039 0.98083 1.21550 0.97971 0.97212 1.05424 1.17928 0.92808 0.93168 0.91064 1.19501 0.91855 0.95585 1.44817 0.92989 1.26890 0.93798 1.04124 0.92131 1.69711 1.01483 1.39899 1.35967 0.85564 0.79428 0.77059 0.79695 1.16649 1.20431 1.17519 1.20834 0.91701 1.00134 1.02042 1.26374 0.99656 0.90290 0.93764 1.74819 1.18417 1.13137 1.10175 1.78599 1.12894 1.16530 1.02296 1.78802 1.18841 0.92568 1.18769 1.48746 1.37819 1.11818 1.10700 1.23167 1.08096 0.69667 1.07859 0.91111 0.88363 0.88517 0.73420 0.82081 0.82781 0.87393 0.89336 0.87913 0.84209 0.86401 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.50 71.98 0.68 -1.50 16 2 C 0.24 4.21 3.16 44.25 0.14 4.35 16 3 H 0.14 1.66 5.96 -2.39 -0.01 1.65 16 4 N -1.10 -25.57 5.46 -172.51 -0.94 -26.51 16 5 S 2.72 80.51 5.65 -56.49 -0.32 80.19 16 6 O -0.99 -37.66 17.27 -128.00 -2.21 -39.87 16 7 O -0.96 -27.53 16.52 -128.00 -2.11 -29.64 16 8 C -0.64 -21.86 5.81 22.22 0.13 -21.73 16 9 C -0.14 -3.97 8.92 22.46 0.20 -3.77 16 10 C -0.09 -2.67 10.02 22.22 0.22 -2.45 16 11 C -0.20 -8.08 7.18 22.73 0.16 -7.91 16 12 C 0.05 2.54 5.11 -21.29 -0.11 2.43 16 13 C -0.49 -26.49 9.57 23.46 0.22 -26.26 16 14 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 15 C 0.05 2.35 5.40 85.26 0.46 2.81 16 16 N -0.84 -44.94 13.93 21.82 0.30 -44.64 16 17 Si 0.96 39.31 24.52 68.60 1.68 41.00 16 18 H -0.24 -8.80 6.71 99.48 0.67 -8.13 16 19 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 20 H -0.25 -10.49 6.86 99.48 0.68 -9.80 16 21 C -0.13 -5.50 9.26 22.73 0.21 -5.29 16 22 C 0.18 4.02 6.94 138.14 0.96 4.98 16 23 N -0.32 -9.13 12.15 -50.46 -0.61 -9.74 16 24 N -0.11 -3.47 13.43 37.01 0.50 -2.98 16 25 N -0.10 -2.82 13.29 37.02 0.49 -2.33 16 26 N -0.29 -5.83 3.75 -359.65 -1.35 -7.18 16 27 C 0.05 0.44 11.21 127.77 1.43 1.88 16 28 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 1.27 7.64 -2.39 -0.02 1.25 16 31 H 0.43 9.93 8.66 -96.74 -0.84 9.09 16 32 H 0.16 3.17 7.59 -2.91 -0.02 3.14 16 33 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.11 4.26 4.73 -2.91 -0.01 4.25 16 35 H 0.30 14.04 8.30 -92.71 -0.77 13.27 16 36 H 0.10 4.69 7.60 -2.91 -0.02 4.67 16 37 H 0.14 0.20 8.14 -2.38 -0.02 0.18 16 38 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.13 0.74 7.01 -2.39 -0.02 0.73 16 Total: -1.00 -75.45 344.88 0.36 -75.09 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.22 Total: 19.10 kcal Atomic # 6 Polarization: -57.19 SS G_CDS: 4.72 Total: -52.47 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -1.61 Total: -93.38 kcal Atomic # 8 Polarization: -65.19 SS G_CDS: -4.32 Total: -69.51 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 1.68 Total: 41.00 kcal Atomic # 16 Polarization: 80.51 SS G_CDS: -0.32 Total: 80.19 kcal Total: -75.45 0.36 -75.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364988236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.116 kcal (2) G-P(sol) polarization free energy of solvation -75.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds