Wall clock time and date at job start Tue Mar 31 2020 19:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47521 * 2 1 4 4 N 1.46507 * 109.46654 * 119.99575 * 2 1 3 5 5 N 1.28936 * 126.47380 * 300.02617 * 4 2 1 6 6 N 1.28574 * 109.63587 * 179.97438 * 5 4 2 7 7 C 1.33386 * 109.88897 * 0.02562 * 6 5 4 8 8 N 1.39624 * 126.25915 * 180.02562 * 7 6 5 9 9 S 1.65602 * 119.99847 * 15.01820 * 8 7 6 10 10 O 1.42098 * 106.40484 * 311.46245 * 9 8 7 11 11 O 1.42102 * 106.40166 * 178.53794 * 9 8 7 12 12 C 1.76199 * 107.21811 * 65.00434 * 9 8 7 13 13 C 1.38661 * 119.87299 * 269.97736 * 12 9 8 14 14 C 1.38613 * 120.49892 * 180.02562 * 13 12 9 15 15 C 1.37643 * 120.25089 * 0.02562 * 14 13 12 16 16 C 1.40698 * 119.74491 * 0.02562 * 15 14 13 17 17 C 1.41390 * 120.24679 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99807 * 335.57587 * 17 16 15 19 19 C 1.39945 * 119.99956 * 155.56926 * 17 16 15 20 20 N 1.30826 * 120.00259 * 341.94073 * 19 17 16 21 21 Si 1.86806 * 119.99911 * 161.93842 * 19 17 16 22 22 H 1.48503 * 109.47143 * 60.00157 * 21 19 17 23 23 H 1.48500 * 109.46912 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46912 * 300.00052 * 21 19 17 25 25 C 1.37600 * 119.87794 * 89.99764 * 12 9 8 26 26 N 1.31688 * 107.48621 * 0.25532 * 7 6 5 27 27 H 1.09000 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47005 * 300.00892 * 1 2 3 29 29 H 1.09006 * 109.46253 * 60.00595 * 1 2 3 30 30 H 1.08999 * 109.47005 * 239.99108 * 2 1 3 31 31 H 1.08995 * 109.47122 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46751 * 299.99580 * 3 2 1 33 33 H 1.09002 * 109.47245 * 59.99321 * 3 2 1 34 34 H 0.96998 * 120.00166 * 195.01785 * 8 7 6 35 35 H 1.07989 * 119.74939 * 0.02562 * 13 12 9 36 36 H 1.08006 * 119.87841 * 179.97438 * 14 13 12 37 37 H 1.07997 * 120.13129 * 180.02562 * 15 14 13 38 38 H 0.96997 * 120.00151 * 180.02562 * 20 19 17 39 39 H 1.08001 * 120.12598 * 0.25706 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 7 1.7845 -0.3609 2.4207 6 7 2.3699 -1.1894 3.2106 7 6 3.0221 -2.1105 2.4996 8 7 3.7715 -3.1714 3.0121 9 16 3.6176 -3.6007 4.6041 10 8 3.7219 -2.3992 5.3556 11 8 4.4724 -4.7184 4.8026 12 6 1.9715 -4.1872 4.8294 13 6 0.9652 -3.3016 5.1841 14 6 -0.3341 -3.7490 5.3653 15 6 -0.6392 -5.0803 5.1948 16 6 0.3739 -5.9882 4.8360 17 6 0.0723 -7.3580 4.6576 18 1 -0.7845 -7.7911 5.1523 19 6 0.8840 -8.1525 3.8400 20 7 1.6889 -7.5918 2.9744 21 14 0.8181 -10.0138 3.9847 22 1 -0.5589 -10.4849 3.6895 23 1 1.7663 -10.6195 3.0155 24 1 1.1941 -10.4167 5.3636 25 6 1.6893 -5.5224 4.6531 26 7 2.8343 -1.8335 1.2260 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.8933 -0.5140 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6769 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 4.3821 -3.6569 2.4357 35 1 1.1957 -2.2554 5.3204 36 1 -1.1101 -3.0505 5.6420 37 1 -1.6523 -5.4267 5.3360 38 1 2.2511 -8.1425 2.4075 39 1 2.4755 -6.2112 4.3811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365465135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:55 Heat of formation + Delta-G solvation = 76.361494 kcal Electronic energy + Delta-G solvation = -27096.862873 eV Core-core repulsion = 23169.788376 eV Total energy + Delta-G solvation = -3927.074497 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.02026 -37.63601 -37.03157 -36.62014 -35.37711 -35.14934 -33.81728 -32.25067 -30.67831 -30.27018 -29.59292 -27.72844 -25.47552 -24.95451 -22.89111 -21.88693 -21.34766 -21.14513 -18.98676 -18.02060 -17.73061 -17.32717 -16.87102 -16.58664 -16.02788 -15.08847 -14.89388 -14.76302 -14.63244 -13.89744 -13.78586 -13.46797 -13.30063 -13.02423 -12.72675 -12.67800 -12.31144 -12.22838 -12.06312 -11.87028 -11.72301 -11.60162 -11.49262 -11.37992 -11.35035 -11.20122 -11.12405 -10.79293 -10.65727 -10.53507 -10.39898 -9.88273 -9.60580 -9.34751 -9.15031 -8.13611 -7.61903 -6.93936 -4.51846 0.70244 1.11953 1.74379 2.15702 2.46720 2.71581 3.01499 3.02361 3.03616 3.12408 3.83949 3.97582 4.11094 4.23799 4.40119 4.50849 4.57700 4.68811 4.99348 5.09377 5.13503 5.30904 5.39038 5.40377 5.55240 5.73241 5.79606 5.97850 6.07106 6.29025 6.39766 6.50488 6.69676 6.84087 6.92100 7.08372 7.21457 7.46329 7.67821 7.77144 8.00235 8.33034 8.36081 8.67518 8.71403 10.03680 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013320 B = 0.003937 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.576238 B = 7110.946698 C = 7646.006795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.162 3.838 3 C -0.165 4.165 4 N -0.199 5.199 5 N 0.021 4.979 6 N -0.303 5.303 7 C 0.446 3.554 8 N -0.998 5.998 9 S 2.680 3.320 10 O -0.937 6.937 11 O -0.950 6.950 12 C -0.640 4.640 13 C -0.140 4.140 14 C -0.110 4.110 15 C -0.180 4.180 16 C 0.089 3.911 17 C -0.461 4.461 18 H 0.082 0.918 19 C 0.075 3.925 20 N -0.795 5.795 21 Si 0.913 3.087 22 H -0.265 1.265 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.057 4.057 26 N -0.322 5.322 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.438 0.562 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.286 0.714 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.593 11.833 -9.034 14.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 C -0.224 4.224 4 N -0.115 5.115 5 N 0.026 4.974 6 N -0.183 5.183 7 C 0.071 3.929 8 N -0.751 5.751 9 S 2.776 3.224 10 O -0.927 6.927 11 O -0.940 6.940 12 C -0.734 4.734 13 C -0.162 4.162 14 C -0.130 4.130 15 C -0.200 4.200 16 C 0.085 3.915 17 C -0.490 4.490 18 H 0.100 0.900 19 C -0.144 4.144 20 N -0.421 5.421 21 Si 0.737 3.263 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.186 1.186 25 C -0.079 4.079 26 N -0.171 5.171 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.138 0.862 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.275 0.725 35 H 0.136 0.864 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.082 12.385 -8.558 15.094 hybrid contribution -0.162 -1.844 -0.734 1.991 sum 0.920 10.541 -9.292 14.082 Atomic orbital electron populations 1.22256 0.91707 1.04227 1.04410 1.21741 0.95974 0.93237 0.82951 1.22243 1.02421 0.93267 1.04469 1.53490 1.32986 1.18327 1.06652 1.78295 1.13040 1.17403 0.88685 1.75554 1.14389 1.03243 1.25138 1.20993 0.93755 0.90463 0.87650 1.53292 1.50897 1.37977 1.32910 1.02343 0.75564 0.73533 0.70930 1.93580 1.86790 1.46557 1.65768 1.93599 1.65972 1.52207 1.82215 1.29629 1.20080 1.03777 1.19878 1.20220 0.92609 0.97720 1.05635 1.20660 0.95495 0.95491 1.01325 1.21271 0.97843 0.92898 1.07969 1.17648 0.90567 0.93221 0.90038 1.19552 1.11029 0.93362 1.25083 0.89954 1.25949 0.93515 1.01895 0.93016 1.69718 1.18984 1.38823 1.14528 0.86280 0.79143 0.81375 0.79504 1.18954 1.20102 1.18556 1.21248 0.98078 0.91673 0.96856 1.78875 1.17141 1.04239 1.16889 0.91126 0.90461 0.89360 0.86181 0.91471 0.89352 0.90496 0.72464 0.86357 0.88342 0.88232 0.90270 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 9.41 37.16 0.35 -0.90 16 2 C 0.16 1.41 3.97 -67.93 -0.27 1.14 16 3 C -0.17 -1.06 9.41 37.16 0.35 -0.71 16 4 N -0.20 -2.80 4.06 -4.89 -0.02 -2.82 16 5 N 0.02 0.34 12.99 60.35 0.78 1.12 16 6 N -0.30 -5.80 10.59 30.02 0.32 -5.48 16 7 C 0.45 8.22 8.88 -320.88 -2.85 5.37 16 8 N -1.00 -17.76 5.90 30.04 0.18 -17.58 16 9 S 2.68 55.76 5.59 -107.50 -0.60 55.16 16 10 O -0.94 -20.60 16.24 -57.17 -0.93 -21.53 16 11 O -0.95 -21.12 17.26 -57.17 -0.99 -22.11 16 12 C -0.64 -15.07 5.90 -39.66 -0.23 -15.31 16 13 C -0.14 -3.22 9.37 -39.29 -0.37 -3.59 16 14 C -0.11 -2.47 10.02 -39.66 -0.40 -2.86 16 15 C -0.18 -4.29 9.80 -38.87 -0.38 -4.67 16 16 C 0.09 2.32 5.58 -106.82 -0.60 1.73 16 17 C -0.46 -11.88 9.05 -37.74 -0.34 -12.22 16 18 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 19 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 20 N -0.80 -20.00 10.97 55.55 0.61 -19.39 16 21 Si 0.91 18.30 29.60 -169.99 -5.03 13.27 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 25 C -0.06 -1.48 8.16 -38.87 -0.32 -1.79 16 26 N -0.32 -5.33 12.79 30.03 0.38 -4.95 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.44 6.36 8.95 -34.47 -0.31 6.05 16 35 H 0.12 2.59 7.14 -52.49 -0.37 2.21 16 36 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 37 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 38 H 0.29 6.55 8.30 -40.82 -0.34 6.21 16 39 H 0.14 3.64 5.71 -52.49 -0.30 3.34 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -32.70 353.10 -9.46 -42.16 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -4.34 Total: 8.91 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: -5.14 Total: -32.09 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 2.25 Total: -49.10 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -1.92 Total: -43.63 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 16 Polarization: 55.76 SS G_CDS: -0.60 Total: 55.16 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.70 -9.46 -42.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365465135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.517 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds