Wall clock time and date at job start Tue Mar 31 2020 19:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47521 * 2 1 4 4 N 1.46507 * 109.46654 * 119.99575 * 2 1 3 5 5 N 1.28936 * 126.47380 * 300.02617 * 4 2 1 6 6 N 1.28574 * 109.63587 * 179.97438 * 5 4 2 7 7 C 1.33386 * 109.88897 * 0.02562 * 6 5 4 8 8 N 1.39624 * 126.25915 * 180.02562 * 7 6 5 9 9 S 1.65602 * 119.99847 * 15.01820 * 8 7 6 10 10 O 1.42098 * 106.40484 * 311.46245 * 9 8 7 11 11 O 1.42102 * 106.40166 * 178.53794 * 9 8 7 12 12 C 1.76199 * 107.21811 * 65.00434 * 9 8 7 13 13 C 1.38661 * 119.87299 * 269.97736 * 12 9 8 14 14 C 1.38613 * 120.49892 * 180.02562 * 13 12 9 15 15 C 1.37643 * 120.25089 * 0.02562 * 14 13 12 16 16 C 1.40698 * 119.74491 * 0.02562 * 15 14 13 17 17 C 1.41390 * 120.24679 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99807 * 335.57587 * 17 16 15 19 19 C 1.39945 * 119.99956 * 155.56926 * 17 16 15 20 20 N 1.30826 * 120.00259 * 341.94073 * 19 17 16 21 21 Si 1.86806 * 119.99911 * 161.93842 * 19 17 16 22 22 H 1.48503 * 109.47143 * 60.00157 * 21 19 17 23 23 H 1.48500 * 109.46912 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46912 * 300.00052 * 21 19 17 25 25 C 1.37600 * 119.87794 * 89.99764 * 12 9 8 26 26 N 1.31688 * 107.48621 * 0.25532 * 7 6 5 27 27 H 1.09000 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47005 * 300.00892 * 1 2 3 29 29 H 1.09006 * 109.46253 * 60.00595 * 1 2 3 30 30 H 1.08999 * 109.47005 * 239.99108 * 2 1 3 31 31 H 1.08995 * 109.47122 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46751 * 299.99580 * 3 2 1 33 33 H 1.09002 * 109.47245 * 59.99321 * 3 2 1 34 34 H 0.96998 * 120.00166 * 195.01785 * 8 7 6 35 35 H 1.07989 * 119.74939 * 0.02562 * 13 12 9 36 36 H 1.08006 * 119.87841 * 179.97438 * 14 13 12 37 37 H 1.07997 * 120.13129 * 180.02562 * 15 14 13 38 38 H 0.96997 * 120.00151 * 180.02562 * 20 19 17 39 39 H 1.08001 * 120.12598 * 0.25706 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 7 1.7845 -0.3609 2.4207 6 7 2.3699 -1.1894 3.2106 7 6 3.0221 -2.1105 2.4996 8 7 3.7715 -3.1714 3.0121 9 16 3.6176 -3.6007 4.6041 10 8 3.7219 -2.3992 5.3556 11 8 4.4724 -4.7184 4.8026 12 6 1.9715 -4.1872 4.8294 13 6 0.9652 -3.3016 5.1841 14 6 -0.3341 -3.7490 5.3653 15 6 -0.6392 -5.0803 5.1948 16 6 0.3739 -5.9882 4.8360 17 6 0.0723 -7.3580 4.6576 18 1 -0.7845 -7.7911 5.1523 19 6 0.8840 -8.1525 3.8400 20 7 1.6889 -7.5918 2.9744 21 14 0.8181 -10.0138 3.9847 22 1 -0.5589 -10.4849 3.6895 23 1 1.7663 -10.6195 3.0155 24 1 1.1941 -10.4167 5.3636 25 6 1.6893 -5.5224 4.6531 26 7 2.8343 -1.8335 1.2260 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.8933 -0.5140 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6769 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 4.3821 -3.6569 2.4357 35 1 1.1957 -2.2554 5.3204 36 1 -1.1101 -3.0505 5.6420 37 1 -1.6523 -5.4267 5.3360 38 1 2.2511 -8.1425 2.4075 39 1 2.4755 -6.2112 4.3811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365465135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:54 Heat of formation + Delta-G solvation = 55.158909 kcal Electronic energy + Delta-G solvation = -27097.782286 eV Core-core repulsion = 23169.788376 eV Total energy + Delta-G solvation = -3927.993910 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.29823 -39.47746 -38.51431 -37.91612 -37.11612 -36.36693 -35.66091 -33.48849 -32.13199 -31.87189 -31.44250 -28.28440 -27.35105 -26.07006 -24.23854 -23.67169 -23.00241 -22.44166 -20.50837 -19.68507 -19.21795 -18.73939 -18.06034 -18.01490 -17.68973 -16.80276 -16.57940 -16.42955 -15.51818 -15.32345 -15.15432 -15.05806 -14.64960 -14.42581 -13.94783 -13.73731 -13.61470 -13.43467 -13.35371 -13.30948 -13.23812 -13.15581 -13.05936 -12.93061 -12.90851 -12.59386 -12.48793 -12.26696 -12.12126 -11.87103 -11.68766 -11.62035 -11.31207 -11.14941 -10.57738 -9.98127 -9.50660 -8.75864 -6.44671 -0.93497 -0.13354 0.30440 0.65508 0.89654 1.07635 1.37229 1.47068 1.50711 1.59297 2.16991 2.40673 2.56349 2.87494 3.00430 3.31402 3.50643 3.76319 3.79004 3.96141 4.25660 4.31347 4.48248 4.55851 4.60371 4.65564 4.68078 4.76239 4.82215 4.96795 5.03086 5.19406 5.20278 5.21119 5.30104 5.37279 5.46363 5.59398 5.82103 5.89731 6.15167 6.43304 6.79305 6.82372 7.06079 8.24071 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013320 B = 0.003937 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.576238 B = 7110.946698 C = 7646.006795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 C -0.159 4.159 4 N -0.177 5.177 5 N 0.019 4.981 6 N -0.340 5.340 7 C 0.427 3.573 8 N -0.990 5.990 9 S 2.712 3.288 10 O -0.947 6.947 11 O -0.967 6.967 12 C -0.649 4.649 13 C -0.143 4.143 14 C -0.110 4.110 15 C -0.188 4.188 16 C 0.059 3.941 17 C -0.495 4.495 18 H 0.086 0.914 19 C 0.034 3.966 20 N -0.824 5.824 21 Si 0.983 3.017 22 H -0.255 1.255 23 H -0.266 1.266 24 H -0.261 1.261 25 C -0.086 4.086 26 N -0.325 5.325 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.140 0.860 31 H 0.060 0.940 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.450 0.550 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.115 0.885 38 H 0.293 0.707 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.094 12.765 -10.527 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 C -0.217 4.217 4 N -0.095 5.095 5 N 0.024 4.976 6 N -0.219 5.219 7 C 0.053 3.947 8 N -0.747 5.747 9 S 2.806 3.194 10 O -0.937 6.937 11 O -0.957 6.957 12 C -0.741 4.741 13 C -0.164 4.164 14 C -0.129 4.129 15 C -0.208 4.208 16 C 0.056 3.944 17 C -0.523 4.523 18 H 0.104 0.896 19 C -0.181 4.181 20 N -0.449 5.449 21 Si 0.803 3.197 22 H -0.179 1.179 23 H -0.191 1.191 24 H -0.186 1.186 25 C -0.107 4.107 26 N -0.175 5.175 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.146 0.854 30 H 0.158 0.842 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.087 0.913 34 H 0.291 0.709 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.133 0.867 38 H 0.104 0.896 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.365 13.335 -10.053 16.704 hybrid contribution -0.002 -1.908 -0.430 1.955 sum 0.363 11.427 -10.483 15.511 Atomic orbital electron populations 1.22294 0.90467 1.03408 1.05997 1.22507 0.96972 0.94476 0.81601 1.22271 1.02001 0.91503 1.05948 1.54128 1.30864 1.17023 1.07449 1.78207 1.13004 1.17023 0.89333 1.75496 1.15725 1.04164 1.26521 1.21085 0.94594 0.90774 0.88255 1.52797 1.51249 1.38258 1.32360 1.01354 0.74139 0.72729 0.71175 1.93558 1.86529 1.46729 1.66894 1.93568 1.66007 1.53071 1.83044 1.29992 1.21932 1.03204 1.18929 1.20490 0.92901 0.98100 1.04888 1.21047 0.96243 0.95565 1.00048 1.21536 0.98218 0.93401 1.07681 1.18045 0.91374 0.94194 0.90826 1.19845 1.12193 0.93984 1.26316 0.89622 1.26809 0.92736 1.06469 0.92117 1.69771 1.19482 1.40672 1.15019 0.85235 0.79663 0.75372 0.79451 1.17943 1.19054 1.18550 1.21128 0.97832 0.92430 0.99339 1.78812 1.17467 1.05143 1.16044 0.93075 0.91237 0.85409 0.84199 0.92113 0.85569 0.91268 0.70902 0.85328 0.84852 0.86687 0.89588 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.41 71.98 0.68 -1.37 16 2 C 0.14 2.13 3.97 44.99 0.18 2.31 16 3 C -0.16 -1.57 9.41 71.98 0.68 -0.90 16 4 N -0.18 -4.74 4.06 -169.38 -0.69 -5.43 16 5 N 0.02 0.60 12.99 37.02 0.48 1.08 16 6 N -0.34 -12.92 10.59 -58.92 -0.62 -13.55 16 7 C 0.43 15.70 8.88 260.81 2.32 18.01 16 8 N -0.99 -35.49 5.90 -58.88 -0.35 -35.84 16 9 S 2.71 114.32 5.59 -56.49 -0.32 114.01 16 10 O -0.95 -41.75 16.24 -128.00 -2.08 -43.83 16 11 O -0.97 -43.83 17.26 -128.00 -2.21 -46.04 16 12 C -0.65 -31.11 5.90 22.22 0.13 -30.97 16 13 C -0.14 -6.52 9.37 22.46 0.21 -6.31 16 14 C -0.11 -4.83 10.02 22.22 0.22 -4.61 16 15 C -0.19 -9.02 9.80 22.73 0.22 -8.80 16 16 C 0.06 3.16 5.58 -21.29 -0.12 3.04 16 17 C -0.49 -26.03 9.05 23.46 0.21 -25.82 16 18 H 0.09 4.26 7.91 -2.91 -0.02 4.24 16 19 C 0.03 1.70 5.14 85.26 0.44 2.14 16 20 N -0.82 -42.30 10.97 21.83 0.24 -42.06 16 21 Si 0.98 37.51 29.60 68.60 2.03 39.54 16 22 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 23 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 24 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 25 C -0.09 -4.58 8.16 22.73 0.19 -4.39 16 26 N -0.32 -10.51 12.79 -58.91 -0.75 -11.26 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.45 13.20 8.95 -96.75 -0.87 12.34 16 35 H 0.13 5.57 7.14 -2.92 -0.02 5.55 16 36 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 37 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 38 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 39 H 0.12 6.71 5.71 -2.91 -0.02 6.69 16 Total: -1.00 -71.85 353.10 1.33 -70.52 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.24 Total: 30.53 kcal Atomic # 6 Polarization: -63.02 SS G_CDS: 5.35 Total: -57.67 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -1.69 Total: -107.06 kcal Atomic # 8 Polarization: -85.58 SS G_CDS: -4.29 Total: -89.87 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Atomic # 16 Polarization: 114.32 SS G_CDS: -0.32 Total: 114.01 kcal Total: -71.85 1.33 -70.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365465135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.675 kcal (2) G-P(sol) polarization free energy of solvation -71.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds