Wall clock time and date at job start Tue Mar 31 2020 20:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47200 * 2 1 4 4 N 1.46502 * 109.46988 * 120.00448 * 2 1 3 5 5 S 1.65604 * 119.99477 * 264.99252 * 4 2 1 6 6 O 1.42095 * 106.40691 * 311.46333 * 5 4 2 7 7 O 1.42101 * 106.40136 * 178.53869 * 5 4 2 8 8 C 1.76204 * 107.21679 * 65.00344 * 5 4 2 9 9 C 1.38639 * 119.74974 * 89.99676 * 8 5 4 10 10 C 1.37620 * 120.24897 * 180.23430 * 9 8 5 11 11 C 1.40715 * 119.74131 * 359.51904 * 10 9 8 12 12 C 1.41399 * 120.24183 * 180.22985 * 11 10 9 13 13 H 1.07996 * 120.00044 * 204.52621 * 12 11 10 14 14 C 1.39950 * 119.99773 * 24.53568 * 12 11 10 15 15 N 1.30821 * 119.99991 * 17.71280 * 14 12 11 16 16 Si 1.86800 * 119.99756 * 197.70913 * 14 12 11 17 17 H 1.48506 * 109.46742 * 59.99979 * 16 14 12 18 18 H 1.48505 * 109.46999 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47336 * 300.00007 * 16 14 12 20 20 C 1.40715 * 119.51261 * 0.47567 * 11 10 9 21 21 C 1.37609 * 119.74608 * 359.75586 * 20 11 10 22 22 C 1.50704 * 109.46975 * 239.99795 * 2 1 3 23 23 N 1.31072 * 126.66312 * 284.69040 * 22 2 1 24 24 N 1.28840 * 107.99235 * 179.89268 * 23 22 2 25 25 N 1.28736 * 109.39361 * 0.37811 * 24 23 22 26 26 N 1.29016 * 108.81231 * 359.76437 * 25 24 23 27 27 C 1.46508 * 126.43983 * 179.97438 * 26 25 24 28 28 H 1.08995 * 109.47545 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46706 * 300.00251 * 1 2 3 30 30 H 1.09003 * 109.47196 * 59.99737 * 1 2 3 31 31 H 0.96998 * 120.00626 * 84.99664 * 4 2 1 32 32 H 1.08000 * 119.87572 * 359.95625 * 9 8 5 33 33 H 1.07993 * 120.12561 * 179.72165 * 10 9 8 34 34 H 0.97005 * 119.99803 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.12510 * 179.73128 * 20 11 10 36 36 H 1.08002 * 119.87647 * 179.97438 * 21 20 11 37 37 H 1.09000 * 109.46826 * 270.02530 * 27 26 25 38 38 H 1.09002 * 109.46841 * 30.02350 * 27 26 25 39 39 H 1.08996 * 109.47389 * 150.02239 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4123 0.1771 2.5504 6 8 3.2437 1.2442 2.1155 7 8 2.8124 -0.7698 3.5315 8 6 0.9276 0.9148 3.1474 9 6 0.1402 0.2328 4.0623 10 6 -1.0239 0.7972 4.5317 11 6 -1.4086 2.0757 4.0871 12 6 -2.6000 2.6676 4.5662 13 1 -3.1040 3.4196 3.9773 14 6 -3.1259 2.2791 5.8036 15 7 -2.3710 1.6488 6.6663 16 14 -4.9057 2.6608 6.2233 17 1 -5.7988 2.0076 5.2327 18 1 -5.2149 2.1474 7.5820 19 1 -5.1184 4.1300 6.1884 20 6 -0.6016 2.7585 3.1584 21 6 0.5558 2.1728 2.6990 22 6 2.0323 -0.7105 -1.2305 23 7 2.0418 -2.0046 -1.4379 24 7 2.5451 -2.2170 -2.6047 25 7 2.8643 -1.0923 -3.1438 26 7 2.5636 -0.1396 -2.3275 27 6 2.7636 1.2943 -2.5520 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.1109 -1.6563 1.1949 32 1 0.4392 -0.7469 4.4046 33 1 -1.6380 0.2624 5.2410 34 1 -2.7357 1.3792 7.5238 35 1 -0.8896 3.7383 2.8072 36 1 1.1766 2.6948 1.9858 37 1 3.7490 1.5851 -2.1880 38 1 2.6924 1.5084 -3.6184 39 1 1.9981 1.8562 -2.0168 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365467120.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:20 Heat of formation + Delta-G solvation = 55.847902 kcal Electronic energy + Delta-G solvation = -26871.650173 eV Core-core repulsion = 22943.686140 eV Total energy + Delta-G solvation = -3927.964033 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.34049 -37.72861 -37.05277 -36.46747 -35.78152 -35.29037 -34.14135 -32.19315 -30.38119 -29.77845 -29.50936 -28.61947 -25.92484 -24.80593 -23.41763 -21.67156 -21.57705 -21.24317 -19.16460 -17.97529 -17.69418 -17.44901 -17.13778 -16.94014 -16.22713 -15.52576 -14.90697 -14.68827 -14.22181 -14.08649 -13.95905 -13.60513 -13.45362 -13.31123 -12.97083 -12.64069 -12.41533 -12.33728 -12.27483 -11.90231 -11.71488 -11.59478 -11.56698 -11.49152 -11.38467 -11.32100 -11.15000 -11.05331 -10.92972 -10.55796 -10.29530 -9.92781 -9.80838 -9.57369 -9.37255 -8.06476 -7.81058 -7.22670 -4.89843 0.89203 1.14835 1.78674 2.08851 2.15266 2.80532 2.82409 2.85303 2.88503 3.45350 3.59524 3.62912 3.99669 4.14558 4.34533 4.44263 4.58791 4.82628 4.88412 4.93463 5.05096 5.20550 5.26666 5.38807 5.52757 5.73662 5.83012 5.91287 5.99504 6.05840 6.25991 6.58968 6.61142 6.80789 6.93097 7.07629 7.23521 7.31035 7.54079 7.66950 7.86760 8.22654 8.41484 8.44750 8.54770 9.68468 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.003145 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.285968 B = 8900.038659 C = 9450.783130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.244 3.756 3 H 0.112 0.888 4 N -1.116 6.116 5 S 2.690 3.310 6 O -0.985 6.985 7 O -0.974 6.974 8 C -0.788 4.788 9 C -0.011 4.011 10 C -0.182 4.182 11 C 0.140 3.860 12 C -0.432 4.432 13 H 0.088 0.912 14 C 0.072 3.928 15 N -0.761 5.761 16 Si 0.918 3.082 17 H -0.259 1.259 18 H -0.274 1.274 19 H -0.261 1.261 20 C -0.236 4.236 21 C -0.002 4.002 22 C 0.186 3.814 23 N -0.292 5.292 24 N -0.076 5.076 25 N -0.097 5.097 26 N -0.304 5.304 27 C 0.072 3.928 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.421 0.579 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.291 0.709 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.113 1.603 -11.437 11.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.132 3.868 3 H 0.130 0.870 4 N -0.871 5.871 5 S 2.789 3.211 6 O -0.975 6.975 7 O -0.964 6.964 8 C -0.885 4.885 9 C -0.031 4.031 10 C -0.203 4.203 11 C 0.136 3.864 12 C -0.459 4.459 13 H 0.106 0.894 14 C -0.152 4.152 15 N -0.383 5.383 16 Si 0.741 3.259 17 H -0.183 1.183 18 H -0.198 1.198 19 H -0.185 1.185 20 C -0.257 4.257 21 C -0.022 4.022 22 C -0.094 4.094 23 N -0.141 5.141 24 N -0.070 5.070 25 N -0.083 5.083 26 N -0.106 5.106 27 C -0.070 4.070 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.256 0.744 32 H 0.122 0.878 33 H 0.140 0.860 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.304 0.572 -11.633 12.107 hybrid contribution -1.500 0.841 0.696 1.855 sum 1.804 1.412 -10.937 11.174 Atomic orbital electron populations 1.22446 0.91675 1.04716 1.04499 1.19008 0.95462 0.94418 0.77935 0.87017 1.55954 1.84072 1.20407 1.26712 1.01383 0.75063 0.72840 0.71794 1.93473 1.66266 1.55742 1.82066 1.93525 1.82530 1.62927 1.57461 1.28996 1.26828 1.09688 1.22973 1.20246 0.93261 0.97035 0.92595 1.21342 0.98070 0.96209 1.04666 1.17845 0.90342 0.90344 0.87882 1.19948 1.05905 1.18337 1.01737 0.89401 1.26158 1.00375 0.92849 0.95769 1.69807 1.36965 1.25421 1.06072 0.86185 0.80920 0.80228 0.78595 1.18306 1.19847 1.18529 1.20997 0.97433 1.00155 1.07084 1.20109 0.94744 0.91985 0.95345 1.26310 0.99355 0.90668 0.93058 1.74947 1.17722 1.11485 1.09970 1.78618 1.11545 1.15420 1.01404 1.78853 1.18974 0.92332 1.18138 1.48427 1.39756 1.10574 1.11845 1.22543 1.05774 0.72405 1.06247 0.90596 0.88269 0.91556 0.74434 0.87769 0.86007 0.89731 0.88175 0.87952 0.87847 0.87192 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 9.50 37.16 0.35 -1.62 16 2 C 0.24 2.91 3.20 -69.08 -0.22 2.68 16 3 H 0.11 1.13 6.55 -51.93 -0.34 0.79 16 4 N -1.12 -15.64 5.46 -5.88 -0.03 -15.67 16 5 S 2.69 47.39 5.71 -107.50 -0.61 46.78 16 6 O -0.99 -18.54 16.60 -57.17 -0.95 -19.49 16 7 O -0.97 -20.04 17.26 -57.17 -0.99 -21.03 16 8 C -0.79 -15.40 5.08 -39.29 -0.20 -15.60 16 9 C -0.01 -0.23 9.49 -39.66 -0.38 -0.61 16 10 C -0.18 -4.23 8.70 -38.87 -0.34 -4.57 16 11 C 0.14 3.24 5.57 -106.82 -0.60 2.65 16 12 C -0.43 -9.87 9.06 -37.74 -0.34 -10.21 16 13 H 0.09 1.87 7.91 -52.49 -0.41 1.46 16 14 C 0.07 1.56 5.14 -17.34 -0.09 1.47 16 15 N -0.76 -17.40 10.95 55.55 0.61 -16.79 16 16 Si 0.92 16.13 29.59 -169.99 -5.03 11.10 16 17 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 18 H -0.27 -4.74 7.11 56.52 0.40 -4.33 16 19 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 20 C -0.24 -4.94 9.80 -38.88 -0.38 -5.32 16 21 C 0.00 -0.03 8.55 -39.66 -0.34 -0.37 16 22 C 0.19 2.34 6.95 -155.43 -1.08 1.26 16 23 N -0.29 -4.36 12.14 32.70 0.40 -3.96 16 24 N -0.08 -1.17 13.43 60.35 0.81 -0.36 16 25 N -0.10 -1.29 13.29 60.35 0.80 -0.49 16 26 N -0.30 -3.29 3.75 -65.02 -0.24 -3.54 16 27 C 0.07 0.39 11.04 59.85 0.66 1.05 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.10 1.30 6.17 -51.93 -0.32 0.98 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.42 5.59 8.65 -34.47 -0.30 5.29 16 32 H 0.10 2.10 7.60 -52.49 -0.40 1.70 16 33 H 0.12 2.91 6.16 -52.49 -0.32 2.58 16 34 H 0.29 6.01 8.30 -40.82 -0.34 5.67 16 35 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.10 1.67 7.60 -52.49 -0.40 1.27 16 37 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.11 0.37 7.41 -51.93 -0.38 -0.01 16 LS Contribution 348.54 15.07 5.25 5.25 Total: -1.00 -31.07 348.54 -7.06 -38.13 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -4.13 Total: 9.25 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -2.95 Total: -29.19 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 2.34 Total: -40.81 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -1.94 Total: -40.52 kcal Atomic # 14 Polarization: 16.13 SS G_CDS: -5.03 Total: 11.10 kcal Atomic # 16 Polarization: 47.39 SS G_CDS: -0.61 Total: 46.78 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.07 -7.06 -38.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365467120.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.980 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds