Wall clock time and date at job start Tue Mar 31 2020 20:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47200 * 2 1 4 4 N 1.46502 * 109.46988 * 120.00448 * 2 1 3 5 5 S 1.65604 * 119.99477 * 264.99252 * 4 2 1 6 6 O 1.42095 * 106.40691 * 311.46333 * 5 4 2 7 7 O 1.42101 * 106.40136 * 178.53869 * 5 4 2 8 8 C 1.76204 * 107.21679 * 65.00344 * 5 4 2 9 9 C 1.38639 * 119.74974 * 89.99676 * 8 5 4 10 10 C 1.37620 * 120.24897 * 180.23430 * 9 8 5 11 11 C 1.40715 * 119.74131 * 359.51904 * 10 9 8 12 12 C 1.41399 * 120.24183 * 180.22985 * 11 10 9 13 13 H 1.07996 * 120.00044 * 204.52621 * 12 11 10 14 14 C 1.39950 * 119.99773 * 24.53568 * 12 11 10 15 15 N 1.30821 * 119.99991 * 17.71280 * 14 12 11 16 16 Si 1.86800 * 119.99756 * 197.70913 * 14 12 11 17 17 H 1.48506 * 109.46742 * 59.99979 * 16 14 12 18 18 H 1.48505 * 109.46999 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47336 * 300.00007 * 16 14 12 20 20 C 1.40715 * 119.51261 * 0.47567 * 11 10 9 21 21 C 1.37609 * 119.74608 * 359.75586 * 20 11 10 22 22 C 1.50704 * 109.46975 * 239.99795 * 2 1 3 23 23 N 1.31072 * 126.66312 * 284.69040 * 22 2 1 24 24 N 1.28840 * 107.99235 * 179.89268 * 23 22 2 25 25 N 1.28736 * 109.39361 * 0.37811 * 24 23 22 26 26 N 1.29016 * 108.81231 * 359.76437 * 25 24 23 27 27 C 1.46508 * 126.43983 * 179.97438 * 26 25 24 28 28 H 1.08995 * 109.47545 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46706 * 300.00251 * 1 2 3 30 30 H 1.09003 * 109.47196 * 59.99737 * 1 2 3 31 31 H 0.96998 * 120.00626 * 84.99664 * 4 2 1 32 32 H 1.08000 * 119.87572 * 359.95625 * 9 8 5 33 33 H 1.07993 * 120.12561 * 179.72165 * 10 9 8 34 34 H 0.97005 * 119.99803 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.12510 * 179.73128 * 20 11 10 36 36 H 1.08002 * 119.87647 * 179.97438 * 21 20 11 37 37 H 1.09000 * 109.46826 * 270.02530 * 27 26 25 38 38 H 1.09002 * 109.46841 * 30.02350 * 27 26 25 39 39 H 1.08996 * 109.47389 * 150.02239 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4123 0.1771 2.5504 6 8 3.2437 1.2442 2.1155 7 8 2.8124 -0.7698 3.5315 8 6 0.9276 0.9148 3.1474 9 6 0.1402 0.2328 4.0623 10 6 -1.0239 0.7972 4.5317 11 6 -1.4086 2.0757 4.0871 12 6 -2.6000 2.6676 4.5662 13 1 -3.1040 3.4196 3.9773 14 6 -3.1259 2.2791 5.8036 15 7 -2.3710 1.6488 6.6663 16 14 -4.9057 2.6608 6.2233 17 1 -5.7988 2.0076 5.2327 18 1 -5.2149 2.1474 7.5820 19 1 -5.1184 4.1300 6.1884 20 6 -0.6016 2.7585 3.1584 21 6 0.5558 2.1728 2.6990 22 6 2.0323 -0.7105 -1.2305 23 7 2.0418 -2.0046 -1.4379 24 7 2.5451 -2.2170 -2.6047 25 7 2.8643 -1.0923 -3.1438 26 7 2.5636 -0.1396 -2.3275 27 6 2.7636 1.2943 -2.5520 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.1109 -1.6563 1.1949 32 1 0.4392 -0.7469 4.4046 33 1 -1.6380 0.2624 5.2410 34 1 -2.7357 1.3792 7.5238 35 1 -0.8896 3.7383 2.8072 36 1 1.1766 2.6948 1.9858 37 1 3.7490 1.5851 -2.1880 38 1 2.6924 1.5084 -3.6184 39 1 1.9981 1.8562 -2.0168 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365467120.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:20 Heat of formation + Delta-G solvation = 33.163009 kcal Electronic energy + Delta-G solvation = -26872.633863 eV Core-core repulsion = 22943.686140 eV Total energy + Delta-G solvation = -3928.947724 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.30667 -39.35269 -38.35634 -37.75667 -36.82750 -36.64627 -35.76453 -33.23647 -32.02587 -31.26146 -30.68867 -29.28125 -27.57662 -25.77693 -24.33736 -23.23375 -22.94059 -22.55684 -20.48655 -19.38825 -19.04337 -18.54755 -18.31325 -18.05632 -17.57011 -17.06395 -16.31199 -15.80219 -15.58911 -15.22075 -14.91439 -14.89278 -14.60850 -14.40426 -14.09845 -13.92907 -13.80219 -13.59614 -13.42485 -13.21706 -13.14387 -13.06639 -12.95806 -12.86243 -12.70306 -12.61424 -12.47696 -12.16629 -12.01683 -11.89087 -11.51425 -11.42292 -11.19385 -11.13934 -10.68917 -9.72960 -9.46578 -8.83667 -6.60201 -0.44925 0.12422 0.53530 1.02374 1.05782 1.14288 1.38253 1.46376 1.51817 2.11935 2.16561 2.55055 2.69031 2.90748 3.19239 3.52063 3.60417 3.68063 3.95905 4.09605 4.21925 4.27476 4.32644 4.40331 4.42585 4.60227 4.72688 4.81640 4.93357 4.95683 5.00317 5.13651 5.17481 5.29018 5.34165 5.58479 5.66225 5.82428 5.92664 6.01036 6.21344 6.55712 6.73967 6.87538 7.45010 8.10553 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.003145 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.285968 B = 8900.038659 C = 9450.783130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.241 3.759 3 H 0.139 0.861 4 N -1.108 6.108 5 S 2.723 3.277 6 O -0.990 6.990 7 O -1.004 7.004 8 C -0.789 4.789 9 C -0.018 4.018 10 C -0.208 4.208 11 C 0.114 3.886 12 C -0.465 4.465 13 H 0.095 0.905 14 C 0.034 3.966 15 N -0.799 5.799 16 Si 0.987 3.013 17 H -0.256 1.256 18 H -0.270 1.270 19 H -0.254 1.254 20 C -0.248 4.248 21 C 0.005 3.995 22 C 0.184 3.816 23 N -0.316 5.316 24 N -0.108 5.108 25 N -0.100 5.100 26 N -0.289 5.289 27 C 0.051 3.949 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.426 0.574 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.297 0.703 35 H 0.116 0.884 36 H 0.139 0.861 37 H 0.118 0.882 38 H 0.132 0.868 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 3.201 -13.082 13.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.130 3.870 3 H 0.156 0.844 4 N -0.866 5.866 5 S 2.820 3.180 6 O -0.980 6.980 7 O -0.994 6.994 8 C -0.883 4.883 9 C -0.038 4.038 10 C -0.228 4.228 11 C 0.111 3.889 12 C -0.492 4.492 13 H 0.113 0.887 14 C -0.185 4.185 15 N -0.422 5.422 16 Si 0.807 3.193 17 H -0.180 1.180 18 H -0.195 1.195 19 H -0.178 1.178 20 C -0.268 4.268 21 C -0.015 4.015 22 C -0.096 4.096 23 N -0.166 5.166 24 N -0.102 5.102 25 N -0.086 5.086 26 N -0.092 5.092 27 C -0.088 4.088 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.262 0.738 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.136 0.864 38 H 0.150 0.850 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.478 2.200 -13.281 13.904 hybrid contribution -1.387 0.354 1.062 1.783 sum 2.091 2.554 -12.219 12.657 Atomic orbital electron populations 1.22417 0.91187 1.04440 1.05083 1.19291 0.95822 0.95235 0.76646 0.84401 1.55583 1.83966 1.20589 1.26485 1.00377 0.73834 0.72173 0.71598 1.93463 1.66009 1.56305 1.82197 1.93488 1.82794 1.63708 1.59429 1.29384 1.26774 1.10054 1.22090 1.20392 0.93088 0.97414 0.92926 1.21319 0.99075 0.96887 1.05555 1.18185 0.91233 0.90602 0.88896 1.20244 1.06758 1.19515 1.02710 0.88685 1.26987 1.04093 0.92199 0.95216 1.69863 1.38816 1.26843 1.06721 0.85146 0.75676 0.80165 0.78293 1.18038 1.19453 1.17822 1.21242 0.97865 1.00856 1.06851 1.20466 0.94311 0.91587 0.95104 1.26224 0.99624 0.90198 0.93590 1.74863 1.18408 1.13139 1.10213 1.78601 1.13062 1.16553 1.01956 1.78771 1.18766 0.92537 1.18531 1.48787 1.37841 1.11929 1.10623 1.23182 1.07589 0.69487 1.08530 0.91432 0.89847 0.88713 0.73816 0.87409 0.87778 0.89237 0.86584 0.84377 0.86382 0.84952 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.49 9.50 71.98 0.68 -2.80 16 2 C 0.24 5.05 3.20 44.25 0.14 5.19 16 3 H 0.14 2.17 6.55 -2.39 -0.02 2.15 16 4 N -1.11 -28.87 5.46 -172.51 -0.94 -29.81 16 5 S 2.72 90.77 5.71 -56.49 -0.32 90.44 16 6 O -0.99 -34.12 16.60 -128.00 -2.12 -36.24 16 7 O -1.00 -40.37 17.26 -128.00 -2.21 -42.58 16 8 C -0.79 -29.86 5.08 22.46 0.11 -29.75 16 9 C -0.02 -0.78 9.49 22.22 0.21 -0.57 16 10 C -0.21 -9.97 8.70 22.73 0.20 -9.77 16 11 C 0.11 5.40 5.57 -21.29 -0.12 5.28 16 12 C -0.47 -21.62 9.06 23.46 0.21 -21.41 16 13 H 0.10 4.09 7.91 -2.91 -0.02 4.06 16 14 C 0.03 1.53 5.14 85.26 0.44 1.96 16 15 N -0.80 -37.78 10.95 21.83 0.24 -37.54 16 16 Si 0.99 33.12 29.59 68.60 2.03 35.15 16 17 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 18 H -0.27 -8.77 7.11 99.48 0.71 -8.07 16 19 H -0.25 -8.18 7.11 99.48 0.71 -7.47 16 20 C -0.25 -10.13 9.80 22.73 0.22 -9.90 16 21 C 0.01 0.18 8.55 22.22 0.19 0.37 16 22 C 0.18 4.19 6.95 138.14 0.96 5.15 16 23 N -0.32 -9.10 12.14 -50.45 -0.61 -9.71 16 24 N -0.11 -3.24 13.43 37.01 0.50 -2.74 16 25 N -0.10 -2.48 13.29 37.02 0.49 -1.99 16 26 N -0.29 -5.43 3.75 -359.62 -1.35 -6.78 16 27 C 0.05 0.34 11.04 127.77 1.41 1.75 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 2.01 6.17 -2.39 -0.01 2.00 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.43 10.76 8.65 -96.75 -0.84 9.93 16 32 H 0.11 4.45 7.60 -2.91 -0.02 4.43 16 33 H 0.10 5.26 6.16 -2.91 -0.02 5.24 16 34 H 0.30 12.64 8.30 -92.70 -0.77 11.87 16 35 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 36 H 0.14 3.95 7.60 -2.91 -0.02 3.92 16 37 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.14 0.23 7.41 -2.39 -0.02 0.21 16 Total: -1.00 -68.41 348.54 0.64 -67.77 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.28 Total: 28.51 kcal Atomic # 6 Polarization: -59.15 SS G_CDS: 4.66 Total: -54.49 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -1.67 Total: -88.57 kcal Atomic # 8 Polarization: -74.49 SS G_CDS: -4.33 Total: -78.83 kcal Atomic # 14 Polarization: 33.12 SS G_CDS: 2.03 Total: 35.15 kcal Atomic # 16 Polarization: 90.77 SS G_CDS: -0.32 Total: 90.44 kcal Total: -68.41 0.64 -67.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365467120.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.933 kcal (2) G-P(sol) polarization free energy of solvation -68.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds