Wall clock time and date at job start Tue Mar 31 2020 19:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35990 * 117.00010 * 2 1 4 4 N 1.30317 * 121.66243 * 0.24321 * 3 2 1 5 5 S 1.69564 * 107.27226 * 180.21248 * 4 3 2 6 6 C 1.72002 * 95.85674 * 359.75392 * 5 4 3 7 7 C 1.35371 * 105.62259 * 359.97438 * 6 5 4 8 8 N 1.40945 * 122.71418 * 179.97438 * 7 6 5 9 9 C 1.34780 * 120.00026 * 5.92055 * 8 7 6 10 10 O 1.21612 * 119.99546 * 354.64117 * 9 8 7 11 11 N 1.34769 * 120.00101 * 174.64759 * 9 8 7 12 12 C 1.40182 * 120.00145 * 179.97438 * 11 9 8 13 13 C 1.40398 * 125.97292 * 359.72083 * 12 11 9 14 14 C 1.35240 * 107.87147 * 180.26001 * 13 12 11 15 15 C 1.50698 * 126.07139 * 179.97438 * 14 13 12 16 16 N 1.34966 * 107.85672 * 359.97438 * 14 13 12 17 17 C 1.46499 * 125.97646 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47084 * 270.00210 * 17 16 14 19 19 H 1.08002 * 120.00043 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00290 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99449 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00248 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47050 * 59.99362 * 22 20 18 24 24 H 1.48504 * 109.46778 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46747 * 299.99531 * 22 20 18 26 26 N 1.31210 * 125.97532 * 180.02562 * 12 11 9 27 27 H 1.09006 * 109.46727 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46905 * 299.99965 * 1 2 3 29 29 H 1.09002 * 109.46745 * 60.00161 * 1 2 3 30 30 H 1.08002 * 127.18988 * 179.97438 * 6 5 4 31 31 H 0.96999 * 120.00270 * 185.91329 * 8 7 6 32 32 H 0.97003 * 120.00234 * 359.97438 * 11 9 8 33 33 H 1.08000 * 126.06623 * 0.25657 * 13 12 11 34 34 H 1.09002 * 109.46958 * 269.99411 * 15 14 13 35 35 H 1.08998 * 109.47541 * 29.99550 * 15 14 13 36 36 H 1.09000 * 109.47164 * 150.00264 * 15 14 13 37 37 H 1.09005 * 109.47384 * 29.99710 * 17 16 14 38 38 H 1.09001 * 109.47411 * 149.99779 * 17 16 14 39 39 H 0.97003 * 119.99507 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 7 1.3687 2.3247 0.0047 5 16 2.4898 3.5968 -0.0031 6 6 3.8895 2.5972 -0.0055 7 6 3.4285 1.3244 0.0005 8 7 4.2841 0.2044 0.0001 9 6 5.6163 0.3740 0.1141 10 8 6.0883 1.4948 0.1192 11 7 6.4253 -0.6984 0.2224 12 6 7.8110 -0.5221 0.3404 13 6 8.4876 0.7081 0.3542 14 6 9.8100 0.4530 0.4772 15 6 10.9103 1.4811 0.5342 16 7 9.9692 -0.8857 0.5399 17 6 11.2437 -1.5954 0.6748 18 6 11.8017 -1.8906 -0.6936 19 1 11.2608 -1.5808 -1.5756 20 6 13.0022 -2.5569 -0.8196 21 7 13.6605 -2.9345 0.2545 22 14 13.6935 -2.9234 -2.5158 23 1 13.9117 -1.6495 -3.2472 24 1 14.9855 -3.6427 -2.3789 25 1 12.7332 -3.7687 -3.2696 26 7 8.7029 -1.4779 0.4517 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.9208 2.9180 -0.0106 31 1 3.9142 -0.6885 -0.0821 32 1 6.0488 -1.5924 0.2186 33 1 8.0327 1.6848 0.2797 34 1 11.2637 1.6915 -0.4753 35 1 10.5284 2.3976 0.9838 36 1 11.7350 1.0978 1.1351 37 1 11.9484 -0.9748 1.2284 38 1 11.0838 -2.5306 1.2115 39 1 14.5053 -3.4030 0.1658 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365523429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:22 Heat of formation + Delta-G solvation = 51.523876 kcal Electronic energy + Delta-G solvation = -25637.411806 eV Core-core repulsion = 21709.260269 eV Total energy + Delta-G solvation = -3928.151537 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.50054 -41.80892 -40.69361 -38.02868 -36.39599 -35.66303 -35.24654 -33.07948 -32.60176 -31.06563 -28.95175 -28.52096 -27.85305 -25.72540 -24.81755 -23.28713 -21.71341 -21.54945 -20.95183 -20.27438 -18.80853 -18.63021 -18.46008 -17.66414 -17.45770 -17.05472 -16.80601 -16.46402 -16.19002 -15.88981 -15.71269 -15.60880 -14.84921 -14.67906 -14.41792 -14.29226 -13.78389 -13.69543 -13.51102 -13.14455 -12.96024 -12.83681 -12.64869 -12.43975 -12.31013 -12.21611 -12.11849 -12.03327 -11.99299 -11.53866 -11.39928 -11.04012 -10.71862 -10.29250 -9.59357 -9.18648 -8.82963 -8.31223 -6.48763 -0.35588 0.28336 0.58883 0.92988 1.04145 1.22886 1.39603 1.40757 1.49743 1.71217 1.99819 2.03002 2.33380 2.35936 2.92233 2.98583 3.61926 3.84186 4.13358 4.17659 4.31984 4.38614 4.44897 4.53968 4.73247 4.74973 4.75252 4.91055 4.94570 4.99417 5.04172 5.16371 5.19197 5.28619 5.55083 5.71498 5.82798 5.93577 5.95951 6.27952 6.55501 6.64107 7.05723 7.18173 7.22015 8.74299 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.023354 B = 0.002193 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.632382 B =12766.704193 C =13332.910054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.303 6.303 3 C 0.300 3.700 4 N -0.537 5.537 5 S 0.339 5.661 6 C -0.222 4.222 7 C 0.070 3.930 8 N -0.636 5.636 9 C 0.719 3.281 10 O -0.570 6.570 11 N -0.627 5.627 12 C 0.290 3.710 13 C -0.293 4.293 14 C 0.087 3.913 15 C -0.082 4.082 16 N -0.343 5.343 17 C 0.275 3.725 18 C -0.552 4.552 19 H 0.050 0.950 20 C 0.023 3.977 21 N -0.918 5.918 22 Si 0.970 3.030 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.276 1.276 26 N -0.357 5.357 27 H 0.130 0.870 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.217 0.783 31 H 0.428 0.572 32 H 0.424 0.576 33 H 0.173 0.827 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.024 0.976 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.882 10.211 -0.041 25.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.210 6.210 3 C 0.082 3.918 4 N -0.377 5.377 5 S 0.486 5.514 6 C -0.372 4.372 7 C -0.042 4.042 8 N -0.285 5.285 9 C 0.419 3.581 10 O -0.447 6.447 11 N -0.278 5.278 12 C 0.035 3.965 13 C -0.324 4.324 14 C -0.043 4.043 15 C -0.140 4.140 16 N -0.125 5.125 17 C 0.156 3.844 18 C -0.591 4.591 19 H 0.068 0.932 20 C -0.178 4.178 21 N -0.556 5.556 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.199 1.199 25 H -0.201 1.201 26 N -0.188 5.188 27 H 0.148 0.852 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.233 0.767 31 H 0.267 0.733 32 H 0.262 0.738 33 H 0.190 0.810 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.320 11.050 0.139 26.713 hybrid contribution 0.922 -2.217 -0.713 2.505 sum -23.398 8.833 -0.574 25.016 Atomic orbital electron populations 1.23227 0.74777 1.05510 1.02545 1.86219 1.24828 1.21664 1.88249 1.19592 0.88240 0.86493 0.97517 1.76414 1.27301 1.01528 1.32475 1.83816 0.88103 1.10421 1.69053 1.27182 1.08557 0.95704 1.05771 1.16868 0.86688 0.88156 1.12504 1.41820 1.02744 1.09143 1.74803 1.15436 0.80800 0.83858 0.78032 1.90669 1.74102 1.22944 1.56956 1.41151 1.01632 1.09872 1.75148 1.18852 0.83867 0.92881 1.00864 1.21420 0.90790 0.99116 1.21044 1.21756 0.97431 0.85661 0.99451 1.20471 0.94145 0.95609 1.03792 1.48775 1.05072 1.04446 1.54238 1.19238 0.75424 0.92113 0.97576 1.21411 1.06307 1.39285 0.92046 0.93167 1.25722 0.96378 0.94381 1.01353 1.69996 1.16276 1.39039 1.30316 0.85431 0.77586 0.78794 0.78841 1.18992 1.19858 1.20115 1.77183 0.89070 1.21022 1.31478 0.85173 0.92162 0.92115 0.76696 0.73315 0.73799 0.80968 0.89860 0.87395 0.91423 0.92951 0.95788 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.47 113.37 1.19 1.55 16 2 O -0.30 -5.04 10.13 -93.43 -0.95 -5.98 16 3 C 0.30 5.96 7.44 85.02 0.63 6.60 16 4 N -0.54 -10.76 11.13 -175.59 -1.95 -12.72 16 5 S 0.34 5.83 23.70 -56.49 -1.34 4.49 16 6 C -0.22 -4.68 10.09 67.16 0.68 -4.01 16 7 C 0.07 1.49 6.62 37.11 0.25 1.73 16 8 N -0.64 -12.91 5.47 -319.24 -1.75 -14.65 16 9 C 0.72 19.22 8.49 179.06 1.52 20.74 16 10 O -0.57 -17.71 10.30 -4.07 -0.04 -17.76 16 11 N -0.63 -17.88 5.45 -321.23 -1.75 -19.63 16 12 C 0.29 11.24 8.11 133.32 1.08 12.32 16 13 C -0.29 -11.30 9.52 22.10 0.21 -11.08 16 14 C 0.09 3.54 6.92 41.38 0.29 3.83 16 15 C -0.08 -2.63 10.11 71.24 0.72 -1.91 16 16 N -0.34 -16.19 3.59 -338.45 -1.22 -17.41 16 17 C 0.28 14.34 5.99 85.63 0.51 14.86 16 18 C -0.55 -30.57 9.39 25.60 0.24 -30.33 16 19 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 20 C 0.02 1.23 5.46 84.66 0.46 1.69 16 21 N -0.92 -51.46 13.29 21.45 0.28 -51.18 16 22 Si 0.97 42.64 29.54 68.60 2.03 44.67 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 26 N -0.36 -16.25 12.59 -54.45 -0.69 -16.94 16 27 H 0.13 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.22 5.05 5.52 -2.91 -0.02 5.04 16 31 H 0.43 6.29 8.44 -92.71 -0.78 5.51 16 32 H 0.42 9.40 8.84 -92.71 -0.82 8.58 16 33 H 0.17 6.22 5.91 -2.91 -0.02 6.20 16 34 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.07 2.24 7.07 -2.39 -0.02 2.22 16 37 H 0.05 2.70 7.04 -2.38 -0.02 2.68 16 38 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -68.65 352.91 -0.05 -68.71 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.46 Total: 22.41 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 7.78 Total: 15.99 kcal Atomic # 7 Polarization: -125.46 SS G_CDS: -7.07 Total: -132.52 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.99 Total: -23.74 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 5.83 SS G_CDS: -1.34 Total: 4.49 kcal Total: -68.65 -0.05 -68.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365523429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.231 kcal (2) G-P(sol) polarization free energy of solvation -68.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds