Wall clock time and date at job start Tue Mar 31 2020 19:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00011 * 2 1 4 4 H 1.48501 * 109.47371 * 272.55232 * 3 2 1 5 5 H 1.48505 * 109.47303 * 32.55183 * 3 2 1 6 6 H 1.48497 * 109.47476 * 152.55139 * 3 2 1 7 7 C 1.37871 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99889 * 354.70661 * 7 2 1 9 9 C 1.50701 * 120.00548 * 174.69665 * 7 2 1 10 10 C 1.53006 * 115.54399 * 88.54976 * 9 7 2 11 11 S 1.81398 * 109.47015 * 65.27710 * 10 9 7 12 12 O 1.42096 * 110.54179 * 285.49429 * 11 10 9 13 13 O 1.42094 * 110.54499 * 62.24939 * 11 10 9 14 14 N 1.65600 * 104.44791 * 173.87117 * 11 10 9 15 15 C 1.46507 * 119.99893 * 64.99787 * 14 11 10 16 16 C 1.50698 * 109.46924 * 164.99631 * 15 14 11 17 17 N 1.32616 * 125.18420 * 90.02798 * 16 15 14 18 18 C 1.32824 * 109.75875 * 179.97438 * 17 16 15 19 19 N 1.33821 * 132.50013 * 180.02562 * 18 17 16 20 20 C 1.31354 * 120.86275 * 179.97438 * 19 18 17 21 21 C 1.40049 * 120.30958 * 359.97438 * 20 19 18 22 22 C 1.35774 * 119.24057 * 0.02562 * 21 20 19 23 23 N 1.35977 * 119.02544 * 359.97438 * 22 21 20 24 24 N 1.31177 * 125.18993 * 269.71705 * 16 15 14 25 25 C 1.52992 * 117.50327 * 234.22139 * 9 7 2 26 26 C 1.52993 * 117.50112 * 302.88470 * 9 7 2 27 27 H 0.97008 * 120.00139 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47301 * 305.27119 * 10 9 7 29 29 H 1.08996 * 109.46652 * 185.27388 * 10 9 7 30 30 H 0.96997 * 120.00581 * 244.99787 * 14 11 10 31 31 H 1.08993 * 109.46984 * 285.00213 * 15 14 11 32 32 H 1.09004 * 109.46724 * 45.00227 * 15 14 11 33 33 H 1.08001 * 119.84513 * 179.97438 * 20 19 18 34 34 H 1.08004 * 120.37783 * 180.02562 * 21 20 19 35 35 H 1.08006 * 120.48786 * 180.02562 * 22 21 20 36 36 H 1.09004 * 117.49837 * 215.00344 * 25 9 7 37 37 H 1.08999 * 117.49897 * 0.02562 * 25 9 7 38 38 H 1.09004 * 117.49792 * 359.97332 * 26 9 7 39 39 H 1.09005 * 117.50198 * 144.97003 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4426 2.0776 -1.3987 5 1 1.4746 2.6365 0.7533 6 1 3.5726 1.4253 0.6453 7 6 2.0045 -1.1940 0.0005 8 1 1.4680 -2.1273 0.0872 9 6 3.5067 -1.1968 -0.1201 10 6 4.2748 -1.0988 1.1996 11 16 3.9656 -2.5861 2.1910 12 8 2.6606 -2.5491 2.7519 13 8 4.4404 -3.7429 1.5161 14 7 4.9750 -2.4308 3.4946 15 6 4.7728 -1.3403 4.4518 16 6 5.5558 -1.6229 5.7080 17 7 6.8068 -1.2432 5.9303 18 6 7.1936 -1.6533 7.1330 19 7 8.3425 -1.5225 7.8066 20 6 8.4791 -2.0293 9.0106 21 6 7.4184 -2.7182 9.6121 22 6 6.2489 -2.8559 8.9362 23 7 6.1392 -2.3196 7.6914 24 7 5.1020 -2.2770 6.7506 25 6 4.1243 -2.0421 -1.2358 26 6 4.1183 -0.5154 -1.3457 27 1 -0.4851 0.8401 -0.0004 28 1 3.9407 -0.2193 1.7500 29 1 5.3418 -1.0148 0.9935 30 1 5.7001 -3.0619 3.6246 31 1 5.1156 -0.4034 4.0129 32 1 3.7129 -1.2616 4.6943 33 1 9.4138 -1.9144 9.5393 34 1 7.5294 -3.1350 10.6022 35 1 5.4177 -3.3829 9.3810 36 1 5.0778 -2.5284 -1.0297 37 1 3.4441 -2.5958 -1.8829 38 1 3.4342 -0.0653 -2.0651 39 1 5.0678 0.0032 -1.2119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365715179.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:23 Heat of formation + Delta-G solvation = 74.508194 kcal Electronic energy + Delta-G solvation = -26340.700002 eV Core-core repulsion = 22413.545140 eV Total energy + Delta-G solvation = -3927.154862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.06719 -40.00351 -38.83914 -38.06641 -36.92649 -36.53047 -35.51019 -34.27591 -32.35633 -31.86897 -30.10017 -28.28990 -27.58790 -25.62021 -24.74622 -23.33082 -22.40947 -21.40820 -20.35559 -19.52742 -19.29270 -18.66347 -18.51637 -17.90455 -17.42751 -17.00153 -16.94742 -16.79937 -15.90134 -15.59549 -15.47732 -14.99649 -14.80551 -14.72418 -14.46338 -14.08093 -13.92269 -13.86006 -13.75750 -13.25970 -13.21337 -13.02069 -13.00056 -12.89245 -12.65563 -12.38133 -12.03001 -11.79105 -11.67213 -11.46692 -11.04346 -10.95139 -10.83214 -10.78109 -10.69685 -10.15818 -9.97019 -8.30172 -6.43741 -0.73804 -0.51468 -0.36809 0.80281 1.19150 1.38839 1.40433 1.53717 1.97811 2.13618 2.36206 2.38276 2.69101 2.85079 3.01673 3.16311 3.27109 3.39749 3.49824 3.76034 3.91730 4.07623 4.14569 4.17095 4.34230 4.38553 4.39777 4.50916 4.55007 4.67293 4.76544 4.88237 4.95199 5.02215 5.04900 5.22536 5.33585 5.47271 5.63560 5.84635 6.21738 6.33759 6.68054 6.71471 7.29225 8.86021 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020263 B = 0.002897 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.485676 B = 9664.344122 C = 9897.695965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.264 1.264 5 H -0.295 1.295 6 H -0.211 1.211 7 C -0.514 4.514 8 H 0.029 0.971 9 C -0.033 4.033 10 C -0.570 4.570 11 S 2.624 3.376 12 O -0.987 6.987 13 O -0.987 6.987 14 N -1.111 6.111 15 C 0.203 3.797 16 C 0.262 3.738 17 N -0.547 5.547 18 C 0.419 3.581 19 N -0.491 5.491 20 C 0.216 3.784 21 C -0.183 4.183 22 C 0.142 3.858 23 N -0.333 5.333 24 N -0.343 5.343 25 C -0.175 4.175 26 C -0.166 4.166 27 H 0.268 0.732 28 H 0.139 0.861 29 H 0.162 0.838 30 H 0.421 0.579 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.241 0.759 34 H 0.233 0.767 35 H 0.211 0.789 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.802 -2.135 23.125 31.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.173 4.173 3 Si 0.754 3.246 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.133 1.133 7 C -0.551 4.551 8 H 0.047 0.953 9 C -0.036 4.036 10 C -0.703 4.703 11 S 2.721 3.279 12 O -0.977 6.977 13 O -0.977 6.977 14 N -0.871 5.871 15 C 0.074 3.926 16 C -0.021 4.021 17 N -0.281 5.281 18 C 0.059 3.941 19 N -0.208 5.208 20 C 0.033 3.967 21 C -0.207 4.207 22 C 0.007 3.993 23 N -0.112 5.112 24 N -0.176 5.176 25 C -0.212 4.212 26 C -0.205 4.205 27 H 0.077 0.923 28 H 0.157 0.843 29 H 0.180 0.820 30 H 0.256 0.744 31 H 0.144 0.856 32 H 0.124 0.876 33 H 0.257 0.743 34 H 0.250 0.750 35 H 0.228 0.772 36 H 0.130 0.870 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 20.875 -2.237 22.099 30.482 hybrid contribution -0.647 0.374 0.218 0.779 sum 20.228 -1.863 22.317 30.178 Atomic orbital electron populations 1.70069 1.08805 1.28466 1.50647 1.25955 0.95265 1.03431 0.92641 0.85997 0.81228 0.77656 0.79734 1.18871 1.22170 1.13287 1.20460 0.89162 0.93401 1.52116 0.95272 1.18774 0.92338 1.06186 0.86284 1.30172 1.10218 1.19702 1.10252 1.04461 0.72799 0.76898 0.73714 1.93532 1.39618 1.87611 1.76903 1.93482 1.81504 1.47613 1.75138 1.55510 1.50131 1.40864 1.40580 1.19747 0.99373 0.91377 0.82075 1.24241 0.89670 0.92662 0.95485 1.70619 1.12937 1.30650 1.13905 1.23000 0.86963 0.92747 0.91342 1.68161 1.17103 1.24294 1.11256 1.24696 1.01287 0.84155 0.86526 1.22710 0.90345 1.02686 1.04956 1.23169 1.02687 0.93497 0.79984 1.48931 1.11727 1.36221 1.14334 1.78523 1.08726 1.29395 1.00967 1.23114 1.02181 0.93561 1.02324 1.23099 1.02195 0.95144 1.00061 0.92266 0.84258 0.81997 0.74436 0.85623 0.87639 0.74258 0.75046 0.77198 0.86956 0.90170 0.90159 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.93 13.96 21.44 0.30 -59.63 16 2 C 0.03 1.52 5.47 84.65 0.46 1.98 16 3 Si 0.93 42.12 24.96 68.60 1.71 43.83 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.21 -7.97 5.68 99.48 0.57 -7.41 16 7 C -0.51 -29.68 8.77 25.60 0.22 -29.45 16 8 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 9 C -0.03 -1.48 0.79 -52.93 -0.04 -1.52 16 10 C -0.57 -20.55 5.55 71.98 0.40 -20.15 16 11 S 2.62 103.61 5.19 -56.49 -0.29 103.32 16 12 O -0.99 -48.83 17.16 -127.65 -2.19 -51.02 16 13 O -0.99 -42.59 18.08 -127.65 -2.31 -44.90 16 14 N -1.11 -33.72 5.88 -190.78 -1.12 -34.84 16 15 C 0.20 5.76 6.75 85.63 0.58 6.34 16 16 C 0.26 7.85 7.49 138.68 1.04 8.89 16 17 N -0.55 -16.66 11.25 -191.25 -2.15 -18.81 16 18 C 0.42 10.70 8.99 261.60 2.35 13.05 16 19 N -0.49 -9.10 10.48 -197.63 -2.07 -11.17 16 20 C 0.22 1.01 11.27 85.20 0.96 1.97 16 21 C -0.18 -0.08 10.06 22.14 0.22 0.14 16 22 C 0.14 1.29 11.32 83.48 0.94 2.23 16 23 N -0.33 -7.37 3.91 -197.70 -0.77 -8.14 16 24 N -0.34 -10.03 12.78 -51.45 -0.66 -10.69 16 25 C -0.17 -6.91 9.96 30.61 0.30 -6.60 16 26 C -0.17 -6.31 7.67 30.61 0.23 -6.07 16 27 H 0.27 15.87 8.31 -92.70 -0.77 15.09 16 28 H 0.14 4.73 6.53 -2.39 -0.02 4.71 16 29 H 0.16 4.20 8.09 -2.39 -0.02 4.18 16 30 H 0.42 11.62 8.61 -96.74 -0.83 10.79 16 31 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.11 3.12 7.69 -2.39 -0.02 3.10 16 33 H 0.24 -1.48 8.06 -2.91 -0.02 -1.50 16 34 H 0.23 -2.53 8.06 -2.91 -0.02 -2.55 16 35 H 0.21 0.55 8.06 -2.91 -0.02 0.53 16 36 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 37 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 38 H 0.08 3.26 7.34 -2.39 -0.02 3.24 16 39 H 0.12 3.54 8.14 -2.38 -0.02 3.52 16 Total: -1.00 -97.40 349.01 -1.74 -99.14 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.13 Total: 22.10 kcal Atomic # 6 Polarization: -36.86 SS G_CDS: 7.68 Total: -29.18 kcal Atomic # 7 Polarization: -136.81 SS G_CDS: -6.47 Total: -143.28 kcal Atomic # 8 Polarization: -91.43 SS G_CDS: -4.50 Total: -95.93 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.71 Total: 43.83 kcal Atomic # 16 Polarization: 103.61 SS G_CDS: -0.29 Total: 103.32 kcal Total: -97.40 -1.74 -99.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365715179.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.647 kcal (2) G-P(sol) polarization free energy of solvation -97.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds