Wall clock time and date at job start Tue Mar 31 2020 20:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.40053 * 125.94362 * 2 1 4 4 C 1.31876 * 108.22998 * 179.97438 * 3 2 1 5 5 C 1.47686 * 125.98637 * 179.97438 * 4 3 2 6 6 O 1.21578 * 120.00394 * 180.02562 * 5 4 3 7 7 N 1.34780 * 120.00002 * 0.02649 * 5 4 3 8 8 C 1.39865 * 120.00135 * 174.07333 * 7 5 4 9 9 C 1.39306 * 119.94883 * 333.61197 * 8 7 5 10 10 C 1.38485 * 120.42668 * 179.72308 * 9 8 7 11 11 C 1.37684 * 120.31912 * 0.54909 * 10 9 8 12 12 C 1.40739 * 119.89366 * 359.72404 * 11 10 9 13 13 C 1.41410 * 120.21128 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99828 * 34.54967 * 13 12 11 15 15 C 1.39928 * 120.00179 * 214.54156 * 13 12 11 16 16 N 1.30830 * 119.99898 * 5.30999 * 15 13 12 17 17 Si 1.86794 * 120.00134 * 185.30641 * 15 13 12 18 18 H 1.48508 * 109.47002 * 60.00381 * 17 15 13 19 19 H 1.48498 * 109.47394 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47280 * 300.00561 * 17 15 13 21 21 C 1.38257 * 119.94967 * 153.88342 * 8 7 5 22 22 C 1.41068 * 108.03173 * 0.02562 * 4 3 2 23 23 C 1.35587 * 107.79945 * 359.97438 * 22 4 3 24 24 O 1.35766 * 126.08473 * 179.97438 * 23 22 4 25 25 C 1.42906 * 117.00228 * 4.89556 * 24 23 22 26 26 F 1.39904 * 109.46487 * 304.71471 * 25 24 23 27 27 F 1.39903 * 109.47051 * 64.71116 * 25 24 23 28 28 H 1.09005 * 109.47176 * 85.03711 * 1 2 3 29 29 H 1.09003 * 109.46589 * 205.03150 * 1 2 3 30 30 H 1.08990 * 109.47460 * 325.02780 * 1 2 3 31 31 H 0.97004 * 119.99971 * 354.07980 * 7 5 4 32 32 H 1.08006 * 119.78556 * 359.97438 * 9 8 7 33 33 H 1.08000 * 119.83988 * 180.25852 * 10 9 8 34 34 H 1.07999 * 120.05235 * 179.75460 * 11 10 9 35 35 H 0.96995 * 120.00215 * 179.97438 * 16 15 13 36 36 H 1.07996 * 120.16230 * 359.97438 * 21 8 7 37 37 H 1.08006 * 126.10426 * 180.02562 * 22 4 3 38 38 H 1.08998 * 109.47234 * 184.71849 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2872 1.1339 0.0000 4 6 3.5434 0.7326 0.0006 5 6 4.7336 1.6069 0.0002 6 8 5.8469 1.1183 0.0003 7 7 4.5858 2.9466 -0.0002 8 6 5.7065 3.7740 0.1246 9 6 6.8460 3.3077 0.7763 10 6 7.9633 4.1165 0.9004 11 6 7.9558 5.3954 0.3904 12 6 6.8097 5.8822 -0.2656 13 6 6.7948 7.1944 -0.7925 14 1 7.6967 7.6201 -1.2068 15 6 5.6115 7.9411 -0.7771 16 7 4.5466 7.4671 -0.1830 17 14 5.5525 9.6147 -1.6046 18 1 5.8627 9.4639 -3.0490 19 1 4.1955 10.1970 -1.4475 20 1 6.5524 10.5139 -0.9748 21 6 5.6798 5.0553 -0.3942 22 6 3.5512 -0.6780 0.0003 23 6 2.2626 -1.0997 0.0002 24 8 1.8438 -2.3911 -0.0005 25 6 2.8504 -3.3997 0.1075 26 9 3.7964 -3.2248 -0.9083 27 9 3.4795 -3.2992 1.3530 28 1 -0.3634 0.0889 -1.0239 29 1 -0.3632 -0.9312 0.4348 30 1 -0.3634 0.8420 0.5890 31 1 3.7020 3.3370 -0.0869 32 1 6.8597 2.3076 1.1838 33 1 8.8432 3.7439 1.4039 34 1 8.8281 6.0238 0.4931 35 1 3.7265 7.9849 -0.1720 36 1 4.7954 5.4191 -0.8961 37 1 4.4274 -1.3096 0.0011 38 1 2.3910 -4.3834 0.0106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411387086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:40 Heat of formation + Delta-G solvation = -66.129030 kcal Electronic energy + Delta-G solvation = -27975.027324 eV Core-core repulsion = 23455.640837 eV Total energy + Delta-G solvation = -4519.386487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.67434 -47.73907 -41.68831 -39.56317 -38.50840 -37.09142 -34.26721 -33.63172 -33.12933 -30.08218 -29.49497 -28.62832 -27.29282 -26.48333 -25.18104 -23.54613 -21.69378 -21.28168 -20.76298 -19.76225 -18.86419 -18.40051 -18.32915 -17.35393 -16.99791 -16.38933 -16.26643 -15.66902 -15.03491 -14.96536 -14.75854 -14.55156 -14.35737 -14.31241 -14.10744 -13.90392 -13.88376 -13.20017 -13.04209 -12.91686 -12.70379 -12.52028 -12.42904 -12.27514 -11.65692 -11.29268 -11.12870 -11.08770 -10.74976 -10.68561 -10.06197 -9.67571 -9.60190 -9.44528 -9.13644 -8.98443 -8.80948 -7.25098 -6.92237 -6.56742 -4.34750 1.20578 1.26597 1.91503 2.51054 2.82007 2.95975 3.02151 3.11452 3.14928 3.26001 3.54843 3.70973 3.81312 4.01516 4.13168 4.16004 4.70837 4.76524 4.85033 4.87748 5.12469 5.23300 5.40462 5.67697 5.77315 6.13165 6.29960 6.61774 6.67523 6.70067 6.86548 7.02087 7.11955 7.18680 7.31911 7.60707 7.72406 7.96019 8.07608 8.18408 8.35535 8.54802 8.73731 8.95285 8.99449 10.34730 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.002595 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.629513 B =10789.138631 C =11949.655992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.354 5.354 3 N -0.237 5.237 4 C 0.066 3.934 5 C 0.588 3.412 6 O -0.506 6.506 7 N -0.643 5.643 8 C 0.139 3.861 9 C -0.224 4.224 10 C -0.090 4.090 11 C -0.218 4.218 12 C 0.121 3.879 13 C -0.470 4.470 14 H 0.076 0.924 15 C 0.074 3.926 16 N -0.814 5.814 17 Si 0.912 3.088 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.267 1.267 21 C -0.167 4.167 22 C -0.263 4.263 23 C 0.256 3.744 24 O -0.317 6.317 25 C 0.428 3.572 26 F -0.189 7.189 27 F -0.191 7.191 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.410 0.590 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.277 0.723 36 H 0.122 0.878 37 H 0.167 0.833 38 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.164 -19.554 0.308 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.146 5.146 3 N -0.067 5.067 4 C -0.101 4.101 5 C 0.372 3.628 6 O -0.379 6.379 7 N -0.285 5.285 8 C 0.048 3.952 9 C -0.244 4.244 10 C -0.109 4.109 11 C -0.238 4.238 12 C 0.119 3.881 13 C -0.501 4.501 14 H 0.094 0.906 15 C -0.141 4.141 16 N -0.442 5.442 17 Si 0.737 3.263 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.192 1.192 21 C -0.188 4.188 22 C -0.294 4.294 23 C 0.088 3.912 24 O -0.230 6.230 25 C 0.338 3.662 26 F -0.171 7.171 27 F -0.173 7.173 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.246 0.754 32 H 0.131 0.869 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.140 0.860 37 H 0.184 0.816 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -12.675 -19.006 0.369 22.848 hybrid contribution -0.042 0.237 -0.295 0.380 sum -12.716 -18.770 0.075 22.672 Atomic orbital electron populations 1.21999 0.72987 1.04926 1.04153 1.48639 1.06955 1.00682 1.58346 1.77906 1.00685 1.04162 1.23967 1.22024 0.92195 0.93945 1.01937 1.16880 0.86227 0.81770 0.77960 1.90794 1.23921 1.74685 1.48521 1.43332 1.10718 1.04755 1.69726 1.17689 0.86747 0.90793 1.00018 1.20576 0.94195 1.00925 1.08744 1.20463 0.96443 0.94239 0.99789 1.21177 1.00125 0.96223 1.06308 1.17354 0.90047 0.92233 0.88493 1.19432 0.96116 0.98161 1.36363 0.90553 1.25812 0.94921 0.99973 0.93423 1.69754 1.02025 1.38152 1.34232 0.86321 0.77928 0.81639 0.80442 1.19084 1.20530 1.19177 1.21063 1.01731 0.91026 1.05025 1.21225 0.95054 0.94894 1.18185 1.18563 0.89720 0.80568 1.02367 1.86317 1.36343 1.11608 1.88755 1.23446 0.78022 0.92239 0.72534 1.93156 1.67401 1.95960 1.60560 1.93159 1.83793 1.96608 1.43739 0.90113 0.88991 0.88550 0.75435 0.86892 0.88823 0.88695 0.91173 0.85984 0.81599 0.79262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 11.44 59.85 0.68 1.40 16 2 N -0.35 -4.37 4.03 -68.18 -0.28 -4.65 16 3 N -0.24 -3.67 12.27 33.34 0.41 -3.26 16 4 C 0.07 1.13 7.09 -82.92 -0.59 0.55 16 5 C 0.59 11.87 7.61 -12.40 -0.09 11.78 16 6 O -0.51 -11.47 14.15 5.30 0.07 -11.39 16 7 N -0.64 -13.38 5.35 -10.81 -0.06 -13.44 16 8 C 0.14 3.39 6.39 -83.79 -0.54 2.85 16 9 C -0.22 -5.45 8.71 -39.09 -0.34 -5.79 16 10 C -0.09 -2.15 10.02 -39.69 -0.40 -2.55 16 11 C -0.22 -5.50 9.79 -38.84 -0.38 -5.88 16 12 C 0.12 3.28 5.50 -106.85 -0.59 2.70 16 13 C -0.47 -12.58 9.04 -37.74 -0.34 -12.92 16 14 H 0.08 1.96 7.85 -52.48 -0.41 1.55 16 15 C 0.07 1.87 5.31 -17.35 -0.09 1.78 16 16 N -0.81 -21.13 10.97 55.55 0.61 -20.52 16 17 Si 0.91 19.06 29.56 -169.99 -5.03 14.04 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 C -0.17 -4.35 8.51 -38.68 -0.33 -4.68 16 22 C -0.26 -3.97 8.87 -39.46 -0.35 -4.32 16 23 C 0.26 3.19 7.48 -16.72 -0.13 3.07 16 24 O -0.32 -2.82 10.35 -19.01 -0.20 -3.02 16 25 C 0.43 2.80 6.00 101.05 0.61 3.41 16 26 F -0.19 -1.75 15.38 2.25 0.03 -1.71 16 27 F -0.19 -1.74 16.81 2.25 0.04 -1.70 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.45 8.04 -51.93 -0.42 0.04 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.41 7.74 8.49 -40.82 -0.35 7.40 16 32 H 0.11 2.72 5.89 -52.48 -0.31 2.41 16 33 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 34 H 0.09 2.23 8.06 -52.49 -0.42 1.80 16 35 H 0.28 6.62 8.30 -40.82 -0.34 6.29 16 36 H 0.12 3.24 6.48 -52.49 -0.34 2.90 16 37 H 0.17 2.48 6.57 -52.48 -0.34 2.14 16 38 H 0.19 0.10 8.14 -51.93 -0.42 -0.32 16 LS Contribution 344.12 15.07 5.19 5.19 Total: -1.00 -33.20 344.12 -5.49 -38.69 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -3.42 Total: 10.40 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -2.87 Total: -8.62 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.69 Total: -41.87 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.12 Total: -14.41 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.07 Total: -3.41 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.20 -5.49 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411387086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.437 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds