Wall clock time and date at job start Tue Mar 31 2020 20:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.40053 * 125.94362 * 2 1 4 4 C 1.31876 * 108.22998 * 179.97438 * 3 2 1 5 5 C 1.47686 * 125.98637 * 179.97438 * 4 3 2 6 6 O 1.21578 * 120.00394 * 180.02562 * 5 4 3 7 7 N 1.34780 * 120.00002 * 0.02649 * 5 4 3 8 8 C 1.39865 * 120.00135 * 174.07333 * 7 5 4 9 9 C 1.39306 * 119.94883 * 333.61197 * 8 7 5 10 10 C 1.38485 * 120.42668 * 179.72308 * 9 8 7 11 11 C 1.37684 * 120.31912 * 0.54909 * 10 9 8 12 12 C 1.40739 * 119.89366 * 359.72404 * 11 10 9 13 13 C 1.41410 * 120.21128 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99828 * 34.54967 * 13 12 11 15 15 C 1.39928 * 120.00179 * 214.54156 * 13 12 11 16 16 N 1.30830 * 119.99898 * 5.30999 * 15 13 12 17 17 Si 1.86794 * 120.00134 * 185.30641 * 15 13 12 18 18 H 1.48508 * 109.47002 * 60.00381 * 17 15 13 19 19 H 1.48498 * 109.47394 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47280 * 300.00561 * 17 15 13 21 21 C 1.38257 * 119.94967 * 153.88342 * 8 7 5 22 22 C 1.41068 * 108.03173 * 0.02562 * 4 3 2 23 23 C 1.35587 * 107.79945 * 359.97438 * 22 4 3 24 24 O 1.35766 * 126.08473 * 179.97438 * 23 22 4 25 25 C 1.42906 * 117.00228 * 4.89556 * 24 23 22 26 26 F 1.39904 * 109.46487 * 304.71471 * 25 24 23 27 27 F 1.39903 * 109.47051 * 64.71116 * 25 24 23 28 28 H 1.09005 * 109.47176 * 85.03711 * 1 2 3 29 29 H 1.09003 * 109.46589 * 205.03150 * 1 2 3 30 30 H 1.08990 * 109.47460 * 325.02780 * 1 2 3 31 31 H 0.97004 * 119.99971 * 354.07980 * 7 5 4 32 32 H 1.08006 * 119.78556 * 359.97438 * 9 8 7 33 33 H 1.08000 * 119.83988 * 180.25852 * 10 9 8 34 34 H 1.07999 * 120.05235 * 179.75460 * 11 10 9 35 35 H 0.96995 * 120.00215 * 179.97438 * 16 15 13 36 36 H 1.07996 * 120.16230 * 359.97438 * 21 8 7 37 37 H 1.08006 * 126.10426 * 180.02562 * 22 4 3 38 38 H 1.08998 * 109.47234 * 184.71849 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2872 1.1339 0.0000 4 6 3.5434 0.7326 0.0006 5 6 4.7336 1.6069 0.0002 6 8 5.8469 1.1183 0.0003 7 7 4.5858 2.9466 -0.0002 8 6 5.7065 3.7740 0.1246 9 6 6.8460 3.3077 0.7763 10 6 7.9633 4.1165 0.9004 11 6 7.9558 5.3954 0.3904 12 6 6.8097 5.8822 -0.2656 13 6 6.7948 7.1944 -0.7925 14 1 7.6967 7.6201 -1.2068 15 6 5.6115 7.9411 -0.7771 16 7 4.5466 7.4671 -0.1830 17 14 5.5525 9.6147 -1.6046 18 1 5.8627 9.4639 -3.0490 19 1 4.1955 10.1970 -1.4475 20 1 6.5524 10.5139 -0.9748 21 6 5.6798 5.0553 -0.3942 22 6 3.5512 -0.6780 0.0003 23 6 2.2626 -1.0997 0.0002 24 8 1.8438 -2.3911 -0.0005 25 6 2.8504 -3.3997 0.1075 26 9 3.7964 -3.2248 -0.9083 27 9 3.4795 -3.2992 1.3530 28 1 -0.3634 0.0889 -1.0239 29 1 -0.3632 -0.9312 0.4348 30 1 -0.3634 0.8420 0.5890 31 1 3.7020 3.3370 -0.0869 32 1 6.8597 2.3076 1.1838 33 1 8.8432 3.7439 1.4039 34 1 8.8281 6.0238 0.4931 35 1 3.7265 7.9849 -0.1720 36 1 4.7954 5.4191 -0.8961 37 1 4.4274 -1.3096 0.0011 38 1 2.3910 -4.3834 0.0106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411387086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:40 Heat of formation + Delta-G solvation = -89.081910 kcal Electronic energy + Delta-G solvation = -27976.022636 eV Core-core repulsion = 23455.640837 eV Total energy + Delta-G solvation = -4520.381799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.28927 -48.37317 -42.78466 -41.18404 -39.40289 -38.90435 -36.07096 -35.14254 -34.49396 -31.48733 -31.18658 -30.29485 -28.27258 -27.24945 -27.10089 -24.87061 -23.16564 -22.63162 -22.33071 -21.21884 -20.02856 -19.29207 -19.04095 -19.00753 -18.12115 -17.48291 -17.42933 -17.21307 -16.72010 -16.51900 -16.10183 -16.03149 -15.45837 -15.25622 -15.15065 -14.89107 -14.76041 -14.55993 -14.52010 -14.17179 -13.86707 -13.65817 -13.52144 -13.41387 -13.12138 -13.10703 -12.79186 -12.65100 -12.41837 -12.28727 -11.91025 -11.57288 -11.40687 -11.02105 -10.81865 -10.47369 -9.87946 -9.24395 -8.82893 -8.47618 -6.37491 -0.05249 0.43126 0.69229 1.00996 1.09384 1.41756 1.52879 1.54234 1.65362 2.09241 2.14058 2.26111 2.53019 2.82445 3.00852 3.39820 3.59365 3.67217 3.72164 3.98015 4.16499 4.35794 4.36928 4.46728 4.64462 4.72625 4.80121 4.81927 4.98251 5.03748 5.14807 5.15013 5.35403 5.68388 5.73068 5.80781 6.00520 6.06478 6.10463 6.32570 6.51807 6.66833 6.93700 6.97124 7.04919 8.44831 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.002595 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.629513 B =10789.138631 C =11949.655992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.343 5.343 3 N -0.249 5.249 4 C 0.042 3.958 5 C 0.592 3.408 6 O -0.536 6.536 7 N -0.642 5.642 8 C 0.143 3.857 9 C -0.236 4.236 10 C -0.086 4.086 11 C -0.235 4.235 12 C 0.094 3.906 13 C -0.503 4.503 14 H 0.077 0.923 15 C 0.032 3.968 16 N -0.839 5.839 17 Si 0.985 3.015 18 H -0.262 1.262 19 H -0.269 1.269 20 H -0.262 1.262 21 C -0.186 4.186 22 C -0.283 4.283 23 C 0.273 3.727 24 O -0.304 6.304 25 C 0.419 3.581 26 F -0.206 7.206 27 F -0.208 7.208 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.418 0.582 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.285 0.715 36 H 0.110 0.890 37 H 0.160 0.840 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.100 -20.674 0.149 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.135 5.135 3 N -0.081 5.081 4 C -0.123 4.123 5 C 0.377 3.623 6 O -0.411 6.411 7 N -0.285 5.285 8 C 0.050 3.950 9 C -0.257 4.257 10 C -0.105 4.105 11 C -0.255 4.255 12 C 0.091 3.909 13 C -0.533 4.533 14 H 0.095 0.905 15 C -0.180 4.180 16 N -0.467 5.467 17 Si 0.807 3.193 18 H -0.187 1.187 19 H -0.194 1.194 20 H -0.186 1.186 21 C -0.208 4.208 22 C -0.314 4.314 23 C 0.103 3.897 24 O -0.217 6.217 25 C 0.330 3.670 26 F -0.188 7.188 27 F -0.189 7.189 28 H 0.117 0.883 29 H 0.139 0.861 30 H 0.124 0.876 31 H 0.255 0.745 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.178 0.822 38 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -14.639 -20.155 0.218 24.911 hybrid contribution 0.432 0.397 -0.213 0.624 sum -14.208 -19.758 0.005 24.336 Atomic orbital electron populations 1.22524 0.69783 1.06997 1.05913 1.49025 1.08463 0.99841 1.56217 1.77813 1.00300 1.05912 1.24079 1.21502 0.91730 0.94183 1.04859 1.17248 0.87033 0.81473 0.76518 1.90753 1.25527 1.75127 1.49729 1.43280 1.10195 1.05014 1.69962 1.17766 0.87722 0.90660 0.98880 1.20763 0.94654 1.01175 1.09138 1.20789 0.97255 0.93550 0.98857 1.21369 1.00182 0.97117 1.06786 1.17757 0.91046 0.92924 0.89174 1.19709 0.97126 0.98715 1.37773 0.90466 1.26685 0.94057 1.03801 0.93483 1.69824 1.02617 1.39756 1.34471 0.85201 0.78394 0.76527 0.79212 1.18651 1.19363 1.18606 1.20974 1.01472 0.91891 1.06463 1.21218 0.96346 0.93969 1.19821 1.18502 0.88772 0.82159 1.00219 1.86402 1.37133 1.09929 1.88214 1.24723 0.77607 0.93490 0.71181 1.93124 1.68336 1.96046 1.61317 1.93128 1.84249 1.96653 1.44900 0.88271 0.86069 0.87601 0.74548 0.86708 0.85693 0.87515 0.90436 0.87163 0.82237 0.72514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 11.44 127.77 1.46 2.42 16 2 N -0.34 -7.79 4.03 -480.56 -1.94 -9.73 16 3 N -0.25 -7.62 12.27 -48.44 -0.59 -8.21 16 4 C 0.04 1.48 7.09 42.33 0.30 1.78 16 5 C 0.59 24.69 7.61 86.74 0.66 25.35 16 6 O -0.54 -25.15 14.15 -3.96 -0.06 -25.21 16 7 N -0.64 -27.68 5.35 -306.37 -1.64 -29.32 16 8 C 0.14 7.17 6.39 38.12 0.24 7.41 16 9 C -0.24 -11.77 8.71 22.59 0.20 -11.57 16 10 C -0.09 -4.10 10.02 22.20 0.22 -3.88 16 11 C -0.23 -12.02 9.79 22.75 0.22 -11.80 16 12 C 0.09 5.22 5.50 -21.31 -0.12 5.10 16 13 C -0.50 -27.56 9.04 23.46 0.21 -27.35 16 14 H 0.08 4.06 7.85 -2.91 -0.02 4.04 16 15 C 0.03 1.66 5.31 85.25 0.45 2.11 16 16 N -0.84 -44.24 10.97 21.82 0.24 -44.00 16 17 Si 0.99 38.98 29.56 68.60 2.03 41.00 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 19 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 20 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 21 C -0.19 -10.09 8.51 22.85 0.19 -9.90 16 22 C -0.28 -8.51 8.87 22.35 0.20 -8.32 16 23 C 0.27 6.35 7.48 83.46 0.62 6.98 16 24 O -0.30 -4.48 10.35 -90.93 -0.94 -5.42 16 25 C 0.42 4.29 6.00 113.37 0.68 4.97 16 26 F -0.21 -3.51 15.38 44.97 0.69 -2.82 16 27 F -0.21 -3.42 16.81 44.97 0.76 -2.66 16 28 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.12 0.69 8.04 -2.39 -0.02 0.67 16 30 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.42 16.41 8.49 -92.71 -0.79 15.62 16 32 H 0.12 5.65 5.89 -2.91 -0.02 5.64 16 33 H 0.13 5.06 8.06 -2.91 -0.02 5.04 16 34 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 35 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 36 H 0.11 6.12 6.48 -2.91 -0.02 6.10 16 37 H 0.16 4.89 6.57 -2.91 -0.02 4.87 16 38 H 0.26 -0.99 8.14 -2.39 -0.02 -1.01 16 Total: -1.00 -74.95 344.12 4.46 -70.49 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: 0.36 Total: 32.57 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 5.55 Total: -16.69 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -3.93 Total: -91.27 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -1.00 Total: -30.63 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 1.45 Total: -5.48 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.00 kcal Total: -74.95 4.46 -70.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411387086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.595 kcal (2) G-P(sol) polarization free energy of solvation -74.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds