Wall clock time and date at job start Tue Mar 31 2020 19:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38056 * 126.29019 * 2 1 4 4 C 1.47409 * 126.41651 * 359.97438 * 3 2 1 5 5 O 1.21611 * 120.00050 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99765 * 179.97438 * 4 3 2 7 7 C 1.40088 * 119.99775 * 175.53545 * 6 4 3 8 8 C 1.38789 * 120.03471 * 34.65827 * 7 6 4 9 9 C 1.38542 * 119.92999 * 179.79334 * 8 7 6 10 10 O 1.35994 * 120.01227 * 180.23158 * 9 8 7 11 11 C 1.38929 * 119.98329 * 0.48104 * 9 8 7 12 12 F 1.35099 * 119.97056 * 179.72591 * 11 9 8 13 13 C 1.38353 * 120.06277 * 359.74915 * 11 9 8 14 14 C 1.38350 * 120.07714 * 0.02562 * 13 11 9 15 15 F 1.35100 * 119.99483 * 179.97438 * 14 13 11 16 16 C 1.41300 * 107.16595 * 179.97438 * 3 2 1 17 17 N 1.30455 * 108.02571 * 359.74503 * 16 3 2 18 18 N 1.34274 * 126.29334 * 179.97438 * 2 1 3 19 19 C 1.46497 * 125.75277 * 359.97438 * 18 2 1 20 20 C 1.50708 * 109.46949 * 89.99995 * 19 18 2 21 21 H 1.07997 * 119.99641 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99851 * 179.72580 * 20 19 18 23 23 N 1.31513 * 120.00015 * 0.27005 * 22 20 19 24 24 Si 1.86801 * 119.99921 * 180.27569 * 22 20 19 25 25 H 1.48498 * 109.46969 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47126 * 119.99774 * 24 22 20 27 27 H 1.48493 * 109.47029 * 239.99823 * 24 22 20 28 28 H 1.09000 * 109.47270 * 269.99892 * 1 2 3 29 29 H 1.09003 * 109.47066 * 29.99982 * 1 2 3 30 30 H 1.09000 * 109.46794 * 150.00279 * 1 2 3 31 31 H 0.97001 * 120.00036 * 355.53373 * 6 4 3 32 32 H 1.08006 * 120.03622 * 0.02562 * 8 7 6 33 33 H 0.96699 * 113.99441 * 270.25304 * 10 9 8 34 34 H 1.08004 * 119.96215 * 179.97438 * 13 11 9 35 35 H 1.07997 * 125.98441 * 179.97438 * 16 3 2 36 36 H 1.09002 * 109.47566 * 330.00241 * 19 18 2 37 37 H 1.08996 * 109.47200 * 209.99292 * 19 18 2 38 38 H 0.97002 * 119.99774 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1128 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.6996 2.7877 -0.0006 6 7 2.8001 3.5106 0.0001 7 6 2.3865 4.8456 -0.0949 8 6 1.1992 5.2490 0.5000 9 6 0.7943 6.5708 0.4084 10 8 -0.3664 6.9689 0.9948 11 6 1.5718 7.4884 -0.2870 12 9 1.1739 8.7761 -0.3808 13 6 2.7528 7.0848 -0.8839 14 6 3.1619 5.7665 -0.7901 15 9 4.3152 5.3740 -1.3741 16 6 3.6592 0.6498 0.0006 17 7 3.6341 -0.6544 0.0065 18 7 2.3018 -1.0822 0.0005 19 6 1.8502 -2.4759 0.0016 20 6 1.6949 -2.9547 -1.4189 21 1 1.9105 -2.2875 -2.2402 22 6 1.2824 -4.2462 -1.6698 23 7 1.0194 -5.0585 -0.6695 24 14 1.0972 -4.8422 -3.4304 25 1 1.4511 -3.7435 -4.3647 26 1 2.0012 -5.9978 -3.6595 27 1 -0.3083 -5.2587 -3.6668 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 3.7444 3.2989 0.0662 32 1 0.5934 4.5341 1.0371 33 1 -1.1420 6.8942 0.4221 34 1 3.3557 7.7995 -1.4245 35 1 4.5450 1.2676 0.0004 36 1 0.8917 -2.5469 0.5158 37 1 2.5851 -3.0955 0.5155 38 1 0.7288 -5.9670 -0.8460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412202027.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:30 Heat of formation + Delta-G solvation = -70.177960 kcal Electronic energy + Delta-G solvation = -27900.176890 eV Core-core repulsion = 23380.614828 eV Total energy + Delta-G solvation = -4519.562062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.28678 -49.22309 -41.11455 -40.24560 -38.83464 -36.93879 -34.67704 -33.95643 -32.20212 -31.44012 -30.44554 -29.25926 -27.36121 -26.75375 -24.16916 -23.58400 -22.96444 -22.01022 -20.19128 -19.54876 -18.82151 -18.41529 -18.01291 -17.10099 -16.99094 -16.76391 -16.37848 -15.74086 -15.49770 -15.29911 -15.05768 -14.94278 -14.64328 -14.57981 -14.33208 -14.15638 -13.92466 -13.35833 -12.96148 -12.80569 -12.63931 -12.49264 -12.21593 -12.15322 -11.89783 -11.59863 -11.22119 -11.15208 -10.97816 -10.50232 -10.42282 -10.30922 -10.00247 -9.68433 -9.17492 -8.78370 -8.72924 -8.43690 -8.06587 -6.40644 -4.49055 0.46239 0.62339 1.92464 2.60071 2.69627 2.93331 3.12585 3.20772 3.22908 3.31990 3.49558 3.62752 3.74044 4.00359 4.18602 4.24353 4.73140 4.85675 4.95382 4.98701 5.08325 5.26180 5.37368 5.38917 5.60624 5.64716 5.75138 5.82021 5.95379 5.97111 6.35780 6.41344 6.48041 6.64813 6.80253 7.00989 7.20387 7.25768 7.46859 7.65638 7.69014 8.13941 8.24872 8.56754 9.18619 10.67569 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.002416 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.017451 B =11588.149980 C =11952.335703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.174 3.826 3 C -0.337 4.337 4 C 0.609 3.391 5 O -0.534 6.534 6 N -0.672 5.672 7 C 0.141 3.859 8 C -0.097 4.097 9 C 0.088 3.912 10 O -0.483 6.483 11 C 0.080 3.920 12 F -0.127 7.127 13 C -0.157 4.157 14 C 0.090 3.910 15 F -0.126 7.126 16 C 0.061 3.939 17 N -0.291 5.291 18 N -0.311 5.311 19 C 0.250 3.750 20 C -0.542 4.542 21 H 0.066 0.934 22 C 0.068 3.932 23 N -0.888 5.888 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.279 1.279 27 H -0.279 1.279 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.415 0.585 32 H 0.170 0.830 33 H 0.396 0.604 34 H 0.155 0.845 35 H 0.178 0.822 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.960 21.519 1.859 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.036 3.964 3 C -0.353 4.353 4 C 0.403 3.597 5 O -0.412 6.412 6 N -0.317 5.317 7 C 0.044 3.956 8 C -0.118 4.118 9 C 0.041 3.959 10 O -0.294 6.294 11 C 0.060 3.940 12 F -0.106 7.106 13 C -0.177 4.177 14 C 0.068 3.932 15 F -0.105 7.105 16 C -0.127 4.127 17 N -0.110 5.110 18 N -0.087 5.087 19 C 0.133 3.867 20 C -0.581 4.581 21 H 0.085 0.915 22 C -0.136 4.136 23 N -0.525 5.525 24 Si 0.735 3.265 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.252 0.748 32 H 0.187 0.813 33 H 0.253 0.747 34 H 0.173 0.827 35 H 0.195 0.805 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.135 20.274 2.369 20.443 hybrid contribution -0.040 0.252 -1.472 1.493 sum 1.095 20.526 0.897 20.574 Atomic orbital electron populations 1.20657 0.86610 1.05077 1.03484 1.21493 0.95042 0.86377 0.93455 1.19435 0.93459 0.91554 1.30837 1.17435 0.84686 0.83883 0.73735 1.90685 1.16458 1.83888 1.50169 1.43289 1.11553 1.02651 1.74206 1.17528 0.95643 0.84536 0.97939 1.21444 0.96824 0.94759 0.98741 1.18213 0.89921 0.90757 0.97015 1.84870 1.15655 1.87013 1.41823 1.17642 0.95607 0.79674 1.01113 1.91517 1.90423 1.34100 1.94553 1.20738 0.97429 0.95457 1.04119 1.17053 0.85577 0.92416 0.98198 1.91532 1.45787 1.91226 1.81919 1.23771 0.96224 0.92733 0.99943 1.77185 0.98604 1.12136 1.23084 1.49453 1.02461 1.08427 1.48373 1.19915 0.96532 0.70681 0.99605 1.21279 1.47756 0.98120 0.90920 0.91550 1.24927 0.94358 0.95965 0.98368 1.69919 1.44384 1.07147 1.31095 0.86262 0.78015 0.78902 0.83328 1.19495 1.20512 1.20499 0.90228 0.88565 0.89635 0.74759 0.81283 0.74668 0.82684 0.80549 0.92411 0.92335 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 9.34 36.01 0.34 -1.31 16 2 C 0.17 3.29 7.01 -81.59 -0.57 2.72 16 3 C -0.34 -5.63 6.13 -105.07 -0.64 -6.28 16 4 C 0.61 9.02 7.66 -12.53 -0.10 8.93 16 5 O -0.53 -8.68 12.25 5.27 0.06 -8.61 16 6 N -0.67 -7.84 5.22 -10.77 -0.06 -7.89 16 7 C 0.14 1.58 6.31 -83.59 -0.53 1.05 16 8 C -0.10 -1.09 8.63 -39.27 -0.34 -1.43 16 9 C 0.09 0.90 6.71 -39.21 -0.26 0.64 16 10 O -0.48 -4.54 13.36 -19.72 -0.26 -4.80 16 11 C 0.08 0.79 7.31 -39.28 -0.29 0.51 16 12 F -0.13 -1.31 17.11 2.25 0.04 -1.28 16 13 C -0.16 -1.40 9.99 -39.50 -0.39 -1.80 16 14 C 0.09 0.90 7.31 -39.25 -0.29 0.62 16 15 F -0.13 -1.29 16.95 2.25 0.04 -1.25 16 16 C 0.06 0.98 11.51 -16.97 -0.20 0.78 16 17 N -0.29 -5.92 12.50 30.86 0.39 -5.53 16 18 N -0.31 -6.65 3.56 -57.77 -0.21 -6.86 16 19 C 0.25 5.95 5.78 -5.19 -0.03 5.92 16 20 C -0.54 -14.13 9.39 -34.44 -0.32 -14.45 16 21 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -23.93 13.29 55.43 0.74 -23.20 16 24 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.10 1.53 6.50 -51.93 -0.34 1.19 16 30 H 0.08 1.49 7.70 -51.93 -0.40 1.09 16 31 H 0.42 3.89 7.63 -40.82 -0.31 3.58 16 32 H 0.17 2.11 6.19 -52.48 -0.32 1.78 16 33 H 0.40 1.94 9.06 45.56 0.41 2.35 16 34 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.18 1.98 7.51 -52.49 -0.39 1.59 16 36 H 0.06 1.36 7.62 -51.93 -0.40 0.97 16 37 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 346.29 15.07 5.22 5.22 Total: -1.00 -30.34 346.29 -5.35 -35.69 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -2.56 Total: 5.66 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -3.72 Total: -2.43 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.86 Total: -43.48 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.20 Total: -13.41 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.08 Total: -2.53 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.34 -5.35 -35.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412202027.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.492 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds