Wall clock time and date at job start Tue Mar 31 2020 19:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38056 * 126.29019 * 2 1 4 4 C 1.47409 * 126.41651 * 359.97438 * 3 2 1 5 5 O 1.21611 * 120.00050 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99765 * 179.97438 * 4 3 2 7 7 C 1.40088 * 119.99775 * 175.53545 * 6 4 3 8 8 C 1.38789 * 120.03471 * 34.65827 * 7 6 4 9 9 C 1.38542 * 119.92999 * 179.79334 * 8 7 6 10 10 O 1.35994 * 120.01227 * 180.23158 * 9 8 7 11 11 C 1.38929 * 119.98329 * 0.48104 * 9 8 7 12 12 F 1.35099 * 119.97056 * 179.72591 * 11 9 8 13 13 C 1.38353 * 120.06277 * 359.74915 * 11 9 8 14 14 C 1.38350 * 120.07714 * 0.02562 * 13 11 9 15 15 F 1.35100 * 119.99483 * 179.97438 * 14 13 11 16 16 C 1.41300 * 107.16595 * 179.97438 * 3 2 1 17 17 N 1.30455 * 108.02571 * 359.74503 * 16 3 2 18 18 N 1.34274 * 126.29334 * 179.97438 * 2 1 3 19 19 C 1.46497 * 125.75277 * 359.97438 * 18 2 1 20 20 C 1.50708 * 109.46949 * 89.99995 * 19 18 2 21 21 H 1.07997 * 119.99641 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99851 * 179.72580 * 20 19 18 23 23 N 1.31513 * 120.00015 * 0.27005 * 22 20 19 24 24 Si 1.86801 * 119.99921 * 180.27569 * 22 20 19 25 25 H 1.48498 * 109.46969 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47126 * 119.99774 * 24 22 20 27 27 H 1.48493 * 109.47029 * 239.99823 * 24 22 20 28 28 H 1.09000 * 109.47270 * 269.99892 * 1 2 3 29 29 H 1.09003 * 109.47066 * 29.99982 * 1 2 3 30 30 H 1.09000 * 109.46794 * 150.00279 * 1 2 3 31 31 H 0.97001 * 120.00036 * 355.53373 * 6 4 3 32 32 H 1.08006 * 120.03622 * 0.02562 * 8 7 6 33 33 H 0.96699 * 113.99441 * 270.25304 * 10 9 8 34 34 H 1.08004 * 119.96215 * 179.97438 * 13 11 9 35 35 H 1.07997 * 125.98441 * 179.97438 * 16 3 2 36 36 H 1.09002 * 109.47566 * 330.00241 * 19 18 2 37 37 H 1.08996 * 109.47200 * 209.99292 * 19 18 2 38 38 H 0.97002 * 119.99774 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1128 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.6996 2.7877 -0.0006 6 7 2.8001 3.5106 0.0001 7 6 2.3865 4.8456 -0.0949 8 6 1.1992 5.2490 0.5000 9 6 0.7943 6.5708 0.4084 10 8 -0.3664 6.9689 0.9948 11 6 1.5718 7.4884 -0.2870 12 9 1.1739 8.7761 -0.3808 13 6 2.7528 7.0848 -0.8839 14 6 3.1619 5.7665 -0.7901 15 9 4.3152 5.3740 -1.3741 16 6 3.6592 0.6498 0.0006 17 7 3.6341 -0.6544 0.0065 18 7 2.3018 -1.0822 0.0005 19 6 1.8502 -2.4759 0.0016 20 6 1.6949 -2.9547 -1.4189 21 1 1.9105 -2.2875 -2.2402 22 6 1.2824 -4.2462 -1.6698 23 7 1.0194 -5.0585 -0.6695 24 14 1.0972 -4.8422 -3.4304 25 1 1.4511 -3.7435 -4.3647 26 1 2.0012 -5.9978 -3.6595 27 1 -0.3083 -5.2587 -3.6668 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 3.7444 3.2989 0.0662 32 1 0.5934 4.5341 1.0371 33 1 -1.1420 6.8942 0.4221 34 1 3.3557 7.7995 -1.4245 35 1 4.5450 1.2676 0.0004 36 1 0.8917 -2.5469 0.5158 37 1 2.5851 -3.0955 0.5155 38 1 0.7288 -5.9670 -0.8460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412202027.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:29 Heat of formation + Delta-G solvation = -90.704293 kcal Electronic energy + Delta-G solvation = -27901.066978 eV Core-core repulsion = 23380.614828 eV Total energy + Delta-G solvation = -4520.452150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.07086 -50.00701 -42.45573 -41.27468 -39.79721 -37.77956 -35.89522 -35.56624 -33.84284 -32.86057 -31.35815 -30.23639 -28.97580 -28.13776 -25.53763 -24.83226 -24.01008 -23.10398 -21.44510 -20.80590 -19.78570 -19.23045 -19.02582 -18.85154 -18.05588 -17.91574 -17.19419 -16.88482 -16.55845 -16.43096 -16.28855 -16.06638 -15.83391 -15.64033 -15.49273 -15.24135 -14.92811 -14.74843 -14.32743 -14.11160 -13.76052 -13.65853 -13.60652 -13.41236 -13.12652 -13.01319 -12.96248 -12.73367 -12.34103 -11.99088 -11.84964 -11.74197 -11.35621 -10.88937 -10.77311 -10.30222 -9.98254 -9.63822 -9.16677 -8.39165 -6.55367 -0.34950 -0.15964 0.60570 1.24715 1.35991 1.38608 1.47933 1.55512 1.94071 2.08608 2.31838 2.45366 2.70622 2.93426 2.97655 3.22351 3.48140 3.65428 3.70272 3.97777 4.01826 4.16927 4.21157 4.46283 4.56390 4.63397 4.66802 4.78160 4.84162 4.89021 4.95664 5.04863 5.13821 5.17597 5.48200 5.58907 5.62450 5.73512 6.00305 6.26371 6.53902 6.63869 6.79001 7.04843 7.16180 8.68928 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.002416 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.017451 B =11588.149980 C =11952.335703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.156 3.844 3 C -0.333 4.333 4 C 0.614 3.386 5 O -0.550 6.550 6 N -0.658 5.658 7 C 0.128 3.872 8 C -0.106 4.106 9 C 0.092 3.908 10 O -0.494 6.494 11 C 0.079 3.921 12 F -0.129 7.129 13 C -0.143 4.143 14 C 0.093 3.907 15 F -0.125 7.125 16 C 0.081 3.919 17 N -0.334 5.334 18 N -0.337 5.337 19 C 0.266 3.734 20 C -0.555 4.555 21 H 0.052 0.948 22 C 0.025 3.975 23 N -0.916 5.916 24 Si 0.970 3.030 25 H -0.272 1.272 26 H -0.274 1.274 27 H -0.269 1.269 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.427 0.573 32 H 0.156 0.844 33 H 0.415 0.585 34 H 0.181 0.819 35 H 0.227 0.773 36 H 0.053 0.947 37 H 0.032 0.968 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 23.694 0.937 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.020 3.980 3 C -0.348 4.348 4 C 0.406 3.594 5 O -0.429 6.429 6 N -0.304 5.304 7 C 0.032 3.968 8 C -0.127 4.127 9 C 0.045 3.955 10 O -0.307 6.307 11 C 0.058 3.942 12 F -0.108 7.108 13 C -0.163 4.163 14 C 0.071 3.929 15 F -0.104 7.104 16 C -0.106 4.106 17 N -0.154 5.154 18 N -0.114 5.114 19 C 0.148 3.852 20 C -0.593 4.593 21 H 0.070 0.930 22 C -0.177 4.177 23 N -0.554 5.554 24 Si 0.794 3.206 25 H -0.197 1.197 26 H -0.200 1.200 27 H -0.194 1.194 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.266 0.734 32 H 0.173 0.827 33 H 0.275 0.725 34 H 0.199 0.801 35 H 0.243 0.757 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.676 22.487 1.448 22.595 hybrid contribution -0.205 -0.218 -1.139 1.177 sum 1.471 22.268 0.309 22.319 Atomic orbital electron populations 1.20648 0.85527 1.04548 1.04374 1.21996 0.96059 0.86490 0.93487 1.19673 0.93442 0.92163 1.29558 1.17137 0.84803 0.83619 0.73867 1.90684 1.17255 1.84031 1.50903 1.43019 1.11657 1.02438 1.73289 1.17603 0.96124 0.84228 0.98866 1.21315 0.96960 0.95026 0.99377 1.18210 0.90271 0.90461 0.96588 1.84818 1.16265 1.86878 1.42783 1.17688 0.95857 0.79487 1.01190 1.91518 1.90492 1.34182 1.94568 1.20943 0.96929 0.95336 1.03078 1.17001 0.85413 0.92513 0.98011 1.91540 1.45688 1.91263 1.81878 1.24551 0.97644 0.91688 0.96713 1.77135 0.98367 1.14367 1.25494 1.49156 1.03389 1.07871 1.50940 1.19399 0.95417 0.72240 0.98155 1.21421 1.47984 0.98362 0.91571 0.92969 1.25708 0.93848 0.95980 1.02147 1.69996 1.44890 1.07573 1.32929 0.85314 0.78435 0.78193 0.78609 1.19697 1.19966 1.19366 0.88654 0.87884 0.91108 0.73362 0.82681 0.72465 0.80144 0.75674 0.92920 0.94961 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.10 9.34 71.24 0.67 -2.44 16 2 C 0.16 5.94 7.01 42.14 0.30 6.23 16 3 C -0.33 -10.78 6.13 -20.15 -0.12 -10.90 16 4 C 0.61 17.26 7.66 86.66 0.66 17.93 16 5 O -0.55 -17.32 12.25 -4.07 -0.05 -17.37 16 6 N -0.66 -13.92 5.22 -306.25 -1.60 -15.51 16 7 C 0.13 2.62 6.31 38.14 0.24 2.86 16 8 C -0.11 -2.24 8.63 22.47 0.19 -2.05 16 9 C 0.09 1.73 6.71 22.51 0.15 1.88 16 10 O -0.49 -8.51 13.36 -93.48 -1.25 -9.76 16 11 C 0.08 1.36 7.31 22.46 0.16 1.52 16 12 F -0.13 -2.35 17.11 44.97 0.77 -1.58 16 13 C -0.14 -2.11 9.99 22.32 0.22 -1.88 16 14 C 0.09 1.61 7.31 22.48 0.16 1.77 16 15 F -0.13 -2.18 16.95 44.97 0.76 -1.42 16 16 C 0.08 2.49 11.51 85.65 0.99 3.47 16 17 N -0.33 -13.66 12.50 -56.27 -0.70 -14.36 16 18 N -0.34 -14.80 3.56 -336.67 -1.20 -16.00 16 19 C 0.27 13.27 5.78 85.64 0.50 13.77 16 20 C -0.56 -29.76 9.39 25.60 0.24 -29.52 16 21 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 22 C 0.02 1.30 5.46 84.65 0.46 1.77 16 23 N -0.92 -50.19 13.29 21.45 0.28 -49.91 16 24 Si 0.97 41.80 29.54 68.60 2.03 43.83 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 28 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.10 3.26 6.50 -2.39 -0.02 3.25 16 30 H 0.07 2.54 7.70 -2.39 -0.02 2.53 16 31 H 0.43 6.75 7.63 -92.71 -0.71 6.04 16 32 H 0.16 3.77 6.19 -2.91 -0.02 3.75 16 33 H 0.42 3.41 9.06 -74.06 -0.67 2.74 16 34 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.23 4.27 7.51 -2.91 -0.02 4.25 16 36 H 0.05 2.61 7.62 -2.39 -0.02 2.60 16 37 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -66.02 346.29 3.66 -62.36 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -0.21 Total: 15.31 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 4.82 Total: 4.40 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -3.21 Total: -95.78 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -1.30 Total: -27.13 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 1.53 Total: -3.00 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -66.02 3.66 -62.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412202027.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.343 kcal (2) G-P(sol) polarization free energy of solvation -66.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds