Wall clock time and date at job start Tue Mar 31 2020 19:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39726 * 125.78041 * 2 1 4 4 C 1.36139 * 107.86146 * 180.13104 * 3 2 1 5 5 N 1.39391 * 126.26735 * 179.84702 * 4 3 2 6 6 C 1.34780 * 119.99412 * 359.68709 * 5 4 3 7 7 O 1.21602 * 120.00520 * 0.02562 * 6 5 4 8 8 C 1.47509 * 119.99744 * 180.02562 * 6 5 4 9 9 C 1.39783 * 120.17011 * 359.97438 * 8 6 5 10 10 C 1.37954 * 119.92060 * 180.02562 * 9 8 6 11 11 F 1.35104 * 119.86932 * 179.97438 * 10 9 8 12 12 C 1.38743 * 120.26877 * 0.02562 * 10 9 8 13 13 C 1.38208 * 120.34183 * 359.72054 * 12 10 9 14 14 F 1.35106 * 119.96026 * 180.30385 * 13 12 10 15 15 C 1.38891 * 120.07476 * 0.55439 * 13 12 10 16 16 O 1.35753 * 120.13388 * 179.72122 * 15 13 12 17 17 N 1.35804 * 107.47309 * 359.58276 * 4 3 2 18 18 C 1.46498 * 126.09568 * 180.24411 * 17 4 3 19 19 C 1.50698 * 109.47729 * 89.99768 * 18 17 4 20 20 H 1.08002 * 119.99626 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00593 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99636 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00098 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46995 * 90.00000 * 23 21 19 25 25 H 1.48496 * 109.47037 * 210.00281 * 23 21 19 26 26 H 1.48500 * 109.47122 * 330.00255 * 23 21 19 27 27 N 1.30829 * 125.77580 * 179.65658 * 2 1 3 28 28 H 1.08996 * 109.47002 * 270.31570 * 1 2 3 29 29 H 1.08995 * 109.46899 * 30.31673 * 1 2 3 30 30 H 1.08999 * 109.46882 * 150.31837 * 1 2 3 31 31 H 1.08003 * 126.06827 * 359.97438 * 3 2 1 32 32 H 0.96993 * 120.00166 * 179.69265 * 5 4 3 33 33 H 1.07999 * 120.03790 * 0.02562 * 9 8 6 34 34 H 1.07996 * 119.82581 * 179.97438 * 12 10 9 35 35 H 0.96700 * 114.00170 * 269.72806 * 16 15 13 36 36 H 1.09007 * 109.47208 * 210.00253 * 18 17 4 37 37 H 1.09005 * 109.47200 * 329.99941 * 18 17 4 38 38 H 0.96999 * 119.99499 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1335 0.0000 4 6 3.6193 0.7147 -0.0030 5 7 4.7497 1.5303 -0.0070 6 6 4.6130 2.8712 -0.0146 7 8 3.5037 3.3693 -0.0175 8 6 5.8091 3.7344 -0.0194 9 6 7.0860 3.1656 -0.0155 10 6 8.2011 3.9777 -0.0195 11 9 9.4347 3.4269 -0.0153 12 6 8.0609 5.3580 -0.0268 13 6 6.8037 5.9321 -0.0360 14 9 6.6762 7.2771 -0.0493 15 6 5.6713 5.1280 -0.0263 16 8 4.4359 5.6906 -0.0296 17 7 3.6088 -0.6433 0.0047 18 6 4.7858 -1.5155 0.0098 19 6 5.1893 -1.8066 1.4322 20 1 4.6251 -1.3845 2.2507 21 6 6.2787 -2.6118 1.6889 22 7 6.9660 -3.1255 0.6922 23 14 6.7783 -2.9732 3.4522 24 1 6.0777 -4.1942 3.9248 25 1 8.2462 -3.1885 3.5165 26 1 6.4082 -1.8241 4.3169 27 7 2.2719 -1.0614 0.0064 28 1 -0.3633 0.0057 1.0276 29 1 -0.3633 0.8871 -0.5187 30 1 -0.3633 -0.8928 -0.5089 31 1 1.9875 2.1598 -0.0004 32 1 5.6345 1.1330 -0.0044 33 1 7.1993 2.0916 -0.0094 34 1 8.9388 5.9871 -0.0295 35 1 4.0777 5.8583 0.8528 36 1 4.5479 -2.4498 -0.4989 37 1 5.6077 -1.0197 -0.5068 38 1 7.7322 -3.6923 0.8728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412445376.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:06 Heat of formation + Delta-G solvation = -75.651057 kcal Electronic energy + Delta-G solvation = -28483.575592 eV Core-core repulsion = 23963.776199 eV Total energy + Delta-G solvation = -4519.799393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.16226 -50.12685 -42.53280 -41.36415 -39.59779 -37.85623 -36.30222 -35.63528 -33.86397 -32.70218 -30.73378 -30.57516 -29.74665 -27.80686 -26.02758 -24.76013 -24.02119 -22.94695 -21.40870 -21.05483 -19.79860 -19.31832 -18.91148 -18.70542 -18.18531 -17.48567 -17.42883 -17.02505 -16.69388 -16.62020 -16.56285 -16.23460 -16.05916 -15.61936 -15.59430 -15.37379 -14.74914 -14.52736 -14.41500 -14.04896 -13.88372 -13.60793 -13.39756 -13.31009 -13.12979 -12.93942 -12.84683 -12.72664 -12.30462 -12.11664 -11.98321 -11.70395 -11.46145 -11.03073 -10.76944 -10.43403 -9.81689 -9.64308 -9.10163 -8.36876 -6.54338 -0.83148 -0.39935 0.82548 1.19254 1.36149 1.38687 1.48098 1.52225 1.93151 2.06452 2.25266 2.33329 2.51222 2.78555 2.93804 3.08098 3.14038 3.52615 3.69192 3.81861 4.06076 4.22508 4.34418 4.48178 4.55295 4.60077 4.68848 4.71957 4.79855 4.84682 4.91429 4.96573 5.20563 5.23647 5.33351 5.50757 5.76079 5.94889 6.05631 6.20685 6.54332 6.55859 6.79613 6.99557 7.17873 8.69525 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.004263 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.103600 B = 6566.121727 C = 9106.356962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.059 3.941 3 C -0.299 4.299 4 C 0.296 3.704 5 N -0.633 5.633 6 C 0.568 3.432 7 O -0.506 6.506 8 C -0.114 4.114 9 C -0.110 4.110 10 C 0.118 3.882 11 F -0.125 7.125 12 C -0.125 4.125 13 C 0.097 3.903 14 F -0.119 7.119 15 C 0.135 3.865 16 O -0.476 6.476 17 N -0.368 5.368 18 C 0.271 3.729 19 C -0.556 4.556 20 H 0.048 0.952 21 C 0.030 3.970 22 N -0.913 5.913 23 Si 0.967 3.033 24 H -0.277 1.277 25 H -0.269 1.269 26 H -0.270 1.270 27 N -0.327 5.327 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.172 0.828 32 H 0.420 0.580 33 H 0.156 0.844 34 H 0.189 0.811 35 H 0.416 0.584 36 H 0.028 0.972 37 H 0.048 0.952 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.914 18.500 -0.495 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C -0.330 4.330 4 C 0.074 3.926 5 N -0.281 5.281 6 C 0.357 3.643 7 O -0.380 6.380 8 C -0.119 4.119 9 C -0.130 4.130 10 C 0.099 3.901 11 F -0.103 7.103 12 C -0.145 4.145 13 C 0.077 3.923 14 F -0.097 7.097 15 C 0.087 3.913 16 O -0.290 6.290 17 N -0.154 5.154 18 C 0.152 3.848 19 C -0.594 4.594 20 H 0.067 0.933 21 C -0.172 4.172 22 N -0.550 5.550 23 Si 0.791 3.209 24 H -0.203 1.203 25 H -0.194 1.194 26 H -0.195 1.195 27 N -0.152 5.152 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.189 0.811 32 H 0.258 0.742 33 H 0.174 0.826 34 H 0.206 0.794 35 H 0.277 0.723 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.561 17.429 -1.144 17.536 hybrid contribution 1.087 -0.032 1.183 1.607 sum 2.648 17.397 0.039 17.597 Atomic orbital electron populations 1.20235 0.83872 1.04084 1.03770 1.22875 0.98761 0.89985 0.99031 1.21500 0.88834 1.00984 1.21728 1.18324 0.89187 0.82798 1.02253 1.42700 1.07919 1.05612 1.71859 1.18001 0.89356 0.80347 0.76625 1.90742 1.26263 1.73650 1.47387 1.19490 0.92062 0.92576 1.07734 1.21444 0.90052 1.02115 0.99366 1.16947 0.79826 0.90647 1.02699 1.91596 1.39319 1.85749 1.93681 1.21387 0.98302 0.93949 1.00848 1.17364 0.92516 0.77711 1.04727 1.91571 1.96582 1.27843 1.93731 1.18349 0.85703 0.88546 0.98713 1.84780 1.27647 1.81162 1.35409 1.49321 1.06296 1.02662 1.57076 1.19244 0.78624 0.89020 0.97866 1.21403 1.13699 1.32705 0.91582 0.93325 1.25649 0.95372 0.94290 1.01914 1.69986 1.19506 1.32612 1.32942 0.85424 0.77867 0.78659 0.78980 1.20268 1.19401 1.19475 1.77304 0.86388 1.23664 1.27868 0.89599 0.88518 0.90712 0.81071 0.74162 0.82630 0.79356 0.72267 0.95414 0.93425 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.66 10.44 71.24 0.74 -0.91 16 2 C 0.06 2.29 7.20 43.07 0.31 2.60 16 3 C -0.30 -11.81 9.58 22.14 0.21 -11.60 16 4 C 0.30 12.33 7.68 131.18 1.01 13.34 16 5 N -0.63 -21.62 5.36 -311.07 -1.67 -23.29 16 6 C 0.57 17.32 7.73 86.69 0.67 17.99 16 7 O -0.51 -17.20 12.28 16.91 0.21 -16.99 16 8 C -0.11 -2.67 5.88 -20.02 -0.12 -2.78 16 9 C -0.11 -2.24 9.51 22.58 0.21 -2.02 16 10 C 0.12 2.07 7.28 22.32 0.16 2.23 16 11 F -0.13 -2.40 17.26 44.97 0.78 -1.63 16 12 C -0.13 -1.75 9.98 22.38 0.22 -1.53 16 13 C 0.10 1.65 7.30 22.42 0.16 1.82 16 14 F -0.12 -2.10 17.11 44.97 0.77 -1.33 16 15 C 0.14 2.82 6.72 22.86 0.15 2.97 16 16 O -0.48 -10.30 11.43 -69.84 -0.80 -11.10 16 17 N -0.37 -17.35 3.62 -348.31 -1.26 -18.62 16 18 C 0.27 13.74 6.02 85.63 0.52 14.25 16 19 C -0.56 -29.79 9.39 25.60 0.24 -29.55 16 20 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 21 C 0.03 1.55 5.46 84.65 0.46 2.01 16 22 N -0.91 -49.12 13.29 21.45 0.28 -48.84 16 23 Si 0.97 41.35 29.54 68.60 2.03 43.38 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 N -0.33 -15.26 12.56 -47.48 -0.60 -15.86 16 28 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.17 6.42 5.83 -2.91 -0.02 6.40 16 32 H 0.42 13.26 6.02 -92.71 -0.56 12.71 16 33 H 0.16 3.12 6.40 -2.91 -0.02 3.10 16 34 H 0.19 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.42 5.76 9.06 -74.06 -0.67 5.09 16 36 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.05 2.31 7.52 -2.38 -0.02 2.30 16 38 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -67.73 345.53 4.64 -63.09 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -0.06 Total: 22.36 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 4.96 Total: 8.82 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -3.24 Total: -106.61 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.59 Total: -28.09 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 1.55 Total: -2.95 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -67.73 4.64 -63.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412445376.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.566 kcal (2) G-P(sol) polarization free energy of solvation -67.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds