Wall clock time and date at job start Tue Mar 31 2020 20:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 S 1.76198 * 126.34429 * 180.02562 * 6 5 4 8 8 O 1.42094 * 106.40441 * 23.49656 * 7 6 5 9 9 O 1.42099 * 106.40299 * 156.41692 * 7 6 5 10 10 N 1.65600 * 107.21974 * 269.95269 * 7 6 5 11 11 C 1.46496 * 120.00341 * 270.00392 * 10 7 6 12 12 C 1.50704 * 109.47205 * 94.99475 * 11 10 7 13 13 H 1.08002 * 120.00322 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99854 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00419 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99688 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47257 * 60.00236 * 16 14 12 18 18 H 1.48505 * 109.46990 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47109 * 299.99970 * 16 14 12 20 20 C 1.46499 * 119.99711 * 89.99604 * 10 7 6 21 21 C 1.50708 * 109.46898 * 95.00474 * 20 10 7 22 22 C 1.38674 * 120.41720 * 269.72077 * 21 20 10 23 23 C 1.38627 * 118.41976 * 179.77865 * 22 21 20 24 24 C 1.38230 * 119.15886 * 0.51812 * 23 22 21 25 25 N 1.31859 * 120.76371 * 359.72158 * 24 23 22 26 26 C 1.31879 * 121.72710 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 28 28 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 29 29 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 30 30 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 31 31 H 1.08995 * 109.47369 * 214.99410 * 11 10 7 32 32 H 1.08998 * 109.47223 * 335.00136 * 11 10 7 33 33 H 0.96996 * 120.00005 * 179.97438 * 15 14 12 34 34 H 1.09001 * 109.47722 * 214.99971 * 20 10 7 35 35 H 1.08996 * 109.47473 * 335.00717 * 20 10 7 36 36 H 1.07997 * 120.78680 * 0.02562 * 22 21 20 37 37 H 1.07998 * 120.42153 * 180.22062 * 23 22 21 38 38 H 1.08001 * 119.62199 * 179.74541 * 24 23 22 39 39 H 1.07996 * 119.62133 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 16 1.7746 -2.7703 -0.0144 8 8 2.8568 -3.5161 0.5255 9 8 0.4625 -2.7990 0.5305 10 7 1.6330 -3.2316 -1.5986 11 6 0.3551 -3.0716 -2.2968 12 6 0.3547 -1.7670 -3.0512 13 1 1.2201 -1.1217 -3.0147 14 6 -0.7499 -1.3976 -3.7890 15 7 -1.8035 -2.1835 -3.8340 16 14 -0.7501 0.2191 -4.7248 17 1 0.3580 0.2190 -5.7135 18 1 -2.0455 0.3814 -5.4324 19 1 -0.5631 1.3426 -3.7718 20 6 2.7859 -3.7995 -2.3019 21 6 2.7250 -5.3038 -2.2331 22 6 3.3318 -5.9840 -1.1881 23 6 3.2463 -7.3674 -1.1633 24 6 2.5730 -8.0188 -2.1797 25 7 2.0121 -7.3395 -3.1608 26 6 2.0692 -6.0230 -3.2140 27 1 -0.3634 -0.0056 1.0276 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9701 2.1169 -0.0004 31 1 0.2177 -3.8959 -2.9965 32 1 -0.4580 -3.0716 -1.5709 33 1 -2.5807 -1.9234 -4.3528 34 1 2.7678 -3.4825 -3.3446 35 1 3.7057 -3.4513 -1.8322 36 1 3.8551 -5.4484 -0.4098 37 1 3.7039 -7.9293 -0.3626 38 1 2.5053 -9.0967 -2.1701 39 1 1.5979 -5.5009 -4.0336 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413268400.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:49 Heat of formation + Delta-G solvation = 49.722739 kcal Electronic energy + Delta-G solvation = -28015.267534 eV Core-core repulsion = 24087.037895 eV Total energy + Delta-G solvation = -3928.229640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.98818 -39.90525 -37.14673 -36.23095 -35.64680 -34.84453 -33.12537 -32.05250 -31.14225 -30.73297 -27.76755 -27.44157 -25.52987 -23.40192 -23.12656 -22.60615 -22.38198 -21.59882 -18.84323 -17.80262 -17.31997 -16.92532 -16.50393 -16.23226 -16.03517 -15.92007 -15.70195 -15.04164 -14.95962 -14.64548 -14.04423 -13.41957 -13.31239 -13.29177 -13.01001 -12.75015 -12.62888 -12.50480 -12.07675 -11.90109 -11.76256 -11.68212 -11.40820 -11.32449 -11.24464 -11.04200 -10.76658 -10.52427 -10.36434 -10.12642 -10.10021 -9.65892 -9.54192 -9.21730 -8.80317 -8.73220 -8.42606 -6.35058 -4.44291 0.50552 1.34053 1.48873 1.55861 2.58790 2.74581 3.05633 3.15689 3.17013 3.31175 3.87723 4.12122 4.14931 4.34697 4.65534 4.68758 4.87903 4.98192 5.02105 5.12314 5.19001 5.23250 5.31909 5.37142 5.47244 5.68753 5.76396 5.83585 5.96876 6.04026 6.11585 6.19523 6.40865 6.59415 6.72598 6.96494 7.03752 7.11242 7.27922 7.60165 7.86194 8.21745 8.53424 8.61444 9.23544 10.71915 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010254 B = 0.006117 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.005200 B = 4575.949249 C = 6440.460402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.406 5.406 3 C 0.173 3.827 4 N -0.302 5.302 5 N -0.202 5.202 6 C -0.362 4.362 7 S 2.715 3.285 8 O -0.940 6.940 9 O -0.943 6.943 10 N -0.964 5.964 11 C 0.239 3.761 12 C -0.552 4.552 13 H 0.060 0.940 14 C 0.072 3.928 15 N -0.880 5.880 16 Si 0.890 3.110 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.278 1.278 20 C 0.170 3.830 21 C -0.153 4.153 22 C -0.062 4.062 23 C -0.182 4.182 24 C 0.092 3.908 25 N -0.491 5.491 26 C 0.122 3.878 27 H 0.090 0.910 28 H 0.125 0.875 29 H 0.098 0.902 30 H 0.224 0.776 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.268 0.732 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.149 0.851 37 H 0.132 0.868 38 H 0.150 0.850 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.641 -0.938 5.427 7.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.093 5.093 3 C -0.115 4.115 4 N -0.146 5.146 5 N -0.049 5.049 6 C -0.705 4.705 7 S 2.794 3.206 8 O -0.930 6.930 9 O -0.932 6.932 10 N -0.805 5.805 11 C 0.118 3.882 12 C -0.591 4.591 13 H 0.078 0.922 14 C -0.133 4.133 15 N -0.517 5.517 16 Si 0.717 3.283 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.204 1.204 20 C 0.044 3.956 21 C -0.157 4.157 22 C -0.088 4.088 23 C -0.202 4.202 24 C -0.065 4.065 25 N -0.199 5.199 26 C -0.035 4.035 27 H 0.108 0.892 28 H 0.144 0.856 29 H 0.116 0.884 30 H 0.241 0.759 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.167 0.833 37 H 0.149 0.851 38 H 0.168 0.832 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.248 -1.827 5.427 7.767 hybrid contribution -0.946 2.351 -0.304 2.553 sum 4.302 0.524 5.123 6.710 Atomic orbital electron populations 1.22698 0.73116 1.08208 1.04890 1.46028 1.10000 1.04907 1.48323 1.26859 0.87132 0.95684 1.01846 1.74167 1.18311 1.03224 1.18897 1.74129 1.16186 1.03540 1.11076 1.38939 0.94580 1.18365 1.18635 1.01945 0.73374 0.71636 0.73643 1.93545 1.56146 1.66050 1.77216 1.93588 1.36966 1.85635 1.76995 1.57488 1.19855 1.72642 1.30470 1.19415 0.77417 0.97997 0.93367 1.21455 1.01303 1.04976 1.31412 0.92186 1.24896 0.95236 0.97091 0.96045 1.69905 1.04895 1.36742 1.40189 0.86699 0.77673 0.83511 0.80399 1.19972 1.20915 1.20373 1.20038 0.87949 0.87233 1.00386 1.21355 0.99838 0.97894 0.96603 1.21901 0.95706 0.94307 0.96913 1.22124 1.02141 0.95307 1.00596 1.22738 0.93526 1.00150 0.90080 1.67727 1.18122 1.09164 1.24919 1.22827 0.93814 0.89393 0.97515 0.89165 0.85638 0.88358 0.75946 0.93090 0.92775 0.92160 0.88190 0.89488 0.83345 0.85055 0.83246 0.82275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.75 10.34 59.85 0.62 1.37 16 2 N -0.41 -6.64 3.15 -126.41 -0.40 -7.04 16 3 C 0.17 2.55 12.74 -89.94 -1.15 1.41 16 4 N -0.30 -5.46 12.21 29.69 0.36 -5.10 16 5 N -0.20 -3.97 12.21 30.35 0.37 -3.60 16 6 C -0.36 -6.73 8.06 -89.95 -0.73 -7.46 16 7 S 2.72 50.77 5.66 -107.50 -0.61 50.17 16 8 O -0.94 -17.79 15.22 -57.18 -0.87 -18.66 16 9 O -0.94 -18.78 14.48 -57.18 -0.83 -19.61 16 10 N -0.96 -17.98 2.75 -116.95 -0.32 -18.30 16 11 C 0.24 5.16 5.43 -5.19 -0.03 5.13 16 12 C -0.55 -12.69 8.84 -34.44 -0.30 -12.99 16 13 H 0.06 1.39 7.81 -52.49 -0.41 0.98 16 14 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.88 -22.42 13.29 55.43 0.74 -21.68 16 16 Si 0.89 18.85 29.54 -169.99 -5.02 13.83 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 20 C 0.17 2.77 5.50 -5.19 -0.03 2.74 16 21 C -0.15 -2.42 5.48 -104.48 -0.57 -2.99 16 22 C -0.06 -0.91 9.43 -39.28 -0.37 -1.29 16 23 C -0.18 -2.35 10.11 -39.44 -0.40 -2.75 16 24 C 0.09 1.24 11.18 -17.54 -0.20 1.05 16 25 N -0.49 -7.90 10.36 -13.25 -0.14 -8.04 16 26 C 0.12 1.97 10.56 -17.55 -0.19 1.79 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.13 2.17 6.28 -51.93 -0.33 1.85 16 29 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.22 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.05 1.15 7.65 -51.93 -0.40 0.75 16 32 H 0.05 1.26 6.91 -51.93 -0.36 0.90 16 33 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 34 H 0.10 1.56 8.06 -51.93 -0.42 1.14 16 35 H 0.09 1.31 7.56 -51.93 -0.39 0.92 16 36 H 0.15 2.18 6.72 -52.49 -0.35 1.83 16 37 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.15 1.53 8.06 -52.49 -0.42 1.10 16 39 H 0.16 2.50 7.91 -52.49 -0.42 2.09 16 LS Contribution 351.00 15.07 5.29 5.29 Total: -1.00 -30.72 351.00 -9.18 -39.90 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.32 Total: 5.20 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -3.43 Total: -12.36 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: 0.61 Total: -63.75 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -1.70 Total: -38.27 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Atomic # 16 Polarization: 50.77 SS G_CDS: -0.61 Total: 50.17 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.72 -9.18 -39.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413268400.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.625 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds