Wall clock time and date at job start Tue Mar 31 2020 20:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 S 1.76198 * 126.34429 * 180.02562 * 6 5 4 8 8 O 1.42094 * 106.40441 * 23.49656 * 7 6 5 9 9 O 1.42099 * 106.40299 * 156.41692 * 7 6 5 10 10 N 1.65600 * 107.21974 * 269.95269 * 7 6 5 11 11 C 1.46496 * 120.00341 * 270.00392 * 10 7 6 12 12 C 1.50704 * 109.47205 * 94.99475 * 11 10 7 13 13 H 1.08002 * 120.00322 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99854 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00419 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99688 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47257 * 60.00236 * 16 14 12 18 18 H 1.48505 * 109.46990 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47109 * 299.99970 * 16 14 12 20 20 C 1.46499 * 119.99711 * 89.99604 * 10 7 6 21 21 C 1.50708 * 109.46898 * 95.00474 * 20 10 7 22 22 C 1.38674 * 120.41720 * 269.72077 * 21 20 10 23 23 C 1.38627 * 118.41976 * 179.77865 * 22 21 20 24 24 C 1.38230 * 119.15886 * 0.51812 * 23 22 21 25 25 N 1.31859 * 120.76371 * 359.72158 * 24 23 22 26 26 C 1.31879 * 121.72710 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 28 28 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 29 29 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 30 30 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 31 31 H 1.08995 * 109.47369 * 214.99410 * 11 10 7 32 32 H 1.08998 * 109.47223 * 335.00136 * 11 10 7 33 33 H 0.96996 * 120.00005 * 179.97438 * 15 14 12 34 34 H 1.09001 * 109.47722 * 214.99971 * 20 10 7 35 35 H 1.08996 * 109.47473 * 335.00717 * 20 10 7 36 36 H 1.07997 * 120.78680 * 0.02562 * 22 21 20 37 37 H 1.07998 * 120.42153 * 180.22062 * 23 22 21 38 38 H 1.08001 * 119.62199 * 179.74541 * 24 23 22 39 39 H 1.07996 * 119.62133 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 16 1.7746 -2.7703 -0.0144 8 8 2.8568 -3.5161 0.5255 9 8 0.4625 -2.7990 0.5305 10 7 1.6330 -3.2316 -1.5986 11 6 0.3551 -3.0716 -2.2968 12 6 0.3547 -1.7670 -3.0512 13 1 1.2201 -1.1217 -3.0147 14 6 -0.7499 -1.3976 -3.7890 15 7 -1.8035 -2.1835 -3.8340 16 14 -0.7501 0.2191 -4.7248 17 1 0.3580 0.2190 -5.7135 18 1 -2.0455 0.3814 -5.4324 19 1 -0.5631 1.3426 -3.7718 20 6 2.7859 -3.7995 -2.3019 21 6 2.7250 -5.3038 -2.2331 22 6 3.3318 -5.9840 -1.1881 23 6 3.2463 -7.3674 -1.1633 24 6 2.5730 -8.0188 -2.1797 25 7 2.0121 -7.3395 -3.1608 26 6 2.0692 -6.0230 -3.2140 27 1 -0.3634 -0.0056 1.0276 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9701 2.1169 -0.0004 31 1 0.2177 -3.8959 -2.9965 32 1 -0.4580 -3.0716 -1.5709 33 1 -2.5807 -1.9234 -4.3528 34 1 2.7678 -3.4825 -3.3446 35 1 3.7057 -3.4513 -1.8322 36 1 3.8551 -5.4484 -0.4098 37 1 3.7039 -7.9293 -0.3626 38 1 2.5053 -9.0967 -2.1701 39 1 1.5979 -5.5009 -4.0336 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413268400.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:48 Heat of formation + Delta-G solvation = 30.487532 kcal Electronic energy + Delta-G solvation = -28016.101636 eV Core-core repulsion = 24087.037895 eV Total energy + Delta-G solvation = -3929.063741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.28961 -41.07228 -38.65100 -37.70888 -37.16642 -36.12118 -34.82806 -33.35111 -32.37829 -32.05467 -29.36954 -28.64483 -26.97509 -24.80378 -24.44394 -24.06766 -23.62799 -22.86627 -20.26946 -19.19367 -18.83930 -18.43681 -17.83082 -17.56137 -17.38146 -17.27399 -17.00651 -16.51656 -16.15240 -16.06019 -15.50873 -14.75082 -14.55994 -14.48052 -14.25762 -14.19312 -14.03089 -13.89669 -13.56945 -13.36697 -13.20851 -13.08479 -13.05261 -12.71972 -12.69236 -12.55287 -12.41404 -12.04281 -11.84827 -11.80452 -11.36067 -10.99568 -10.73138 -10.58428 -10.43189 -9.99793 -9.91988 -8.19287 -6.33305 -0.95405 0.13967 0.22746 0.39176 1.37698 1.38391 1.45194 1.46498 1.50235 1.85988 2.39206 2.43074 2.90763 3.01167 3.13303 3.58691 3.60333 3.73963 3.75648 3.90717 3.93523 4.10501 4.19629 4.28634 4.30047 4.46968 4.60387 4.67280 4.68072 4.86610 4.89422 4.91241 5.26400 5.28941 5.33701 5.46850 5.56682 5.61539 5.77510 5.84355 6.04465 6.76891 7.06723 7.21595 7.37248 8.87721 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010254 B = 0.006117 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.005200 B = 4575.949249 C = 6440.460402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.410 5.410 3 C 0.194 3.806 4 N -0.332 5.332 5 N -0.224 5.224 6 C -0.381 4.381 7 S 2.728 3.272 8 O -0.946 6.946 9 O -0.959 6.959 10 N -0.966 5.966 11 C 0.256 3.744 12 C -0.544 4.544 13 H 0.058 0.942 14 C 0.032 3.968 15 N -0.914 5.914 16 Si 0.941 3.059 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.259 1.259 20 C 0.168 3.832 21 C -0.163 4.163 22 C -0.073 4.073 23 C -0.172 4.172 24 C 0.091 3.909 25 N -0.514 5.514 26 C 0.106 3.894 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.279 0.721 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.268 0.732 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.149 0.851 37 H 0.168 0.832 38 H 0.186 0.814 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.132 0.024 6.081 7.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.096 5.096 3 C -0.094 4.094 4 N -0.176 5.176 5 N -0.071 5.071 6 C -0.726 4.726 7 S 2.808 3.192 8 O -0.935 6.935 9 O -0.949 6.949 10 N -0.806 5.806 11 C 0.133 3.867 12 C -0.583 4.583 13 H 0.076 0.924 14 C -0.169 4.169 15 N -0.553 5.553 16 Si 0.767 3.233 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.183 1.183 20 C 0.042 3.958 21 C -0.167 4.167 22 C -0.100 4.100 23 C -0.191 4.191 24 C -0.066 4.066 25 N -0.223 5.223 26 C -0.050 4.050 27 H 0.133 0.867 28 H 0.111 0.889 29 H 0.148 0.852 30 H 0.294 0.706 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.167 0.833 37 H 0.186 0.814 38 H 0.203 0.797 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.751 -0.875 6.089 8.421 hybrid contribution -1.057 2.025 -0.451 2.328 sum 4.695 1.150 5.637 7.426 Atomic orbital electron populations 1.22888 0.71993 1.08103 1.06542 1.46248 1.10719 1.04693 1.47971 1.27875 0.85814 0.97207 0.98483 1.74100 1.20339 1.02676 1.20495 1.74075 1.16803 1.04581 1.11667 1.38642 0.94977 1.18786 1.20195 1.01382 0.72859 0.71687 0.73279 1.93528 1.56116 1.66610 1.77229 1.93562 1.37847 1.86092 1.77380 1.57379 1.19568 1.73171 1.30451 1.19004 0.78209 0.97029 0.92458 1.21565 1.00893 1.05113 1.30777 0.92374 1.25513 0.94946 0.99661 0.96821 1.70011 1.05535 1.38399 1.41323 0.85869 0.77056 0.80965 0.79393 1.20576 1.21234 1.18347 1.20166 0.87434 0.87872 1.00323 1.21277 1.00721 0.97425 0.97268 1.22054 0.95862 0.95485 0.96594 1.22509 1.00973 0.94573 1.01064 1.23367 0.92323 1.01755 0.89198 1.67728 1.19111 1.09051 1.26376 1.22759 0.94590 0.89876 0.97807 0.86732 0.88931 0.85235 0.70587 0.94656 0.94777 0.92305 0.88145 0.88408 0.83309 0.81443 0.79734 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.21 10.34 127.77 1.32 2.53 16 2 N -0.41 -12.61 3.15 -553.83 -1.74 -14.35 16 3 C 0.19 5.13 12.74 180.11 2.30 7.43 16 4 N -0.33 -11.44 12.21 -59.99 -0.73 -12.17 16 5 N -0.22 -8.62 12.21 -57.90 -0.71 -9.32 16 6 C -0.38 -13.92 8.06 180.11 1.45 -12.47 16 7 S 2.73 102.83 5.66 -56.49 -0.32 102.51 16 8 O -0.95 -35.86 15.22 -128.00 -1.95 -37.81 16 9 O -0.96 -38.81 14.48 -128.00 -1.85 -40.66 16 10 N -0.97 -36.80 2.75 -523.92 -1.44 -38.24 16 11 C 0.26 11.36 5.43 85.64 0.47 11.82 16 12 C -0.54 -25.18 8.84 25.60 0.23 -24.96 16 13 H 0.06 2.68 7.81 -2.91 -0.02 2.66 16 14 C 0.03 1.54 5.46 84.66 0.46 2.01 16 15 N -0.91 -47.25 13.29 21.45 0.28 -46.97 16 16 Si 0.94 37.90 29.54 68.60 2.03 39.93 16 17 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 18 H -0.29 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 20 C 0.17 5.58 5.50 85.64 0.47 6.05 16 21 C -0.16 -5.23 5.48 -19.77 -0.11 -5.34 16 22 C -0.07 -2.13 9.43 22.47 0.21 -1.91 16 23 C -0.17 -4.08 10.11 22.36 0.23 -3.86 16 24 C 0.09 2.27 11.18 84.69 0.95 3.22 16 25 N -0.51 -16.40 10.36 -195.84 -2.03 -18.43 16 26 C 0.11 3.54 10.56 84.67 0.89 4.43 16 27 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.09 3.17 6.28 -2.39 -0.01 3.15 16 29 H 0.13 2.56 8.14 -2.38 -0.02 2.54 16 30 H 0.28 3.69 8.06 -2.91 -0.02 3.66 16 31 H 0.04 1.67 7.65 -2.39 -0.02 1.65 16 32 H 0.03 1.66 6.91 -2.39 -0.02 1.64 16 33 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 34 H 0.10 3.26 8.06 -2.39 -0.02 3.24 16 35 H 0.10 2.99 7.56 -2.39 -0.02 2.98 16 36 H 0.15 4.27 6.72 -2.91 -0.02 4.25 16 37 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 38 H 0.19 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.15 5.07 7.91 -2.91 -0.02 5.05 16 Total: -1.00 -67.02 351.00 1.49 -65.54 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 1.09 Total: 21.04 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 8.86 Total: -11.06 kcal Atomic # 7 Polarization: -133.11 SS G_CDS: -6.37 Total: -139.48 kcal Atomic # 8 Polarization: -74.67 SS G_CDS: -3.80 Total: -78.47 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Atomic # 16 Polarization: 102.83 SS G_CDS: -0.32 Total: 102.51 kcal Total: -67.02 1.49 -65.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413268400.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.025 kcal (2) G-P(sol) polarization free energy of solvation -67.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds