Wall clock time and date at job start Tue Mar 31 2020 19:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99995 * 2 1 4 4 H 1.48500 * 109.47010 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47262 * 300.00237 * 3 2 1 6 6 H 1.48507 * 109.46967 * 60.00209 * 3 2 1 7 7 C 1.37878 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00181 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.47256 * 59.99617 * 9 7 2 11 11 N 1.46504 * 109.47280 * 180.02562 * 9 7 2 12 12 C 1.34780 * 119.99967 * 204.99922 * 11 9 7 13 13 O 1.21655 * 119.99976 * 359.97438 * 12 11 9 14 14 C 1.46733 * 119.99602 * 179.97438 * 12 11 9 15 15 N 1.29527 * 119.59647 * 0.27437 * 14 12 11 16 16 N 1.39858 * 121.26327 * 180.37642 * 15 14 12 17 17 C 1.46497 * 119.80345 * 198.89053 * 16 15 14 18 18 C 1.52997 * 109.47195 * 269.73157 * 17 16 15 19 19 O 1.42898 * 109.47319 * 64.99855 * 18 17 16 20 20 C 1.34757 * 120.39829 * 18.62142 * 16 15 14 21 21 O 1.21252 * 120.11695 * 179.97438 * 20 16 15 22 22 C 1.50764 * 119.75837 * 359.97438 * 20 16 15 23 23 C 1.50550 * 119.54206 * 180.02562 * 14 12 11 24 24 C 1.53008 * 109.46943 * 299.99837 * 9 7 2 25 25 F 1.39906 * 109.46886 * 300.00230 * 24 9 7 26 26 F 1.39894 * 109.46999 * 59.99951 * 24 9 7 27 27 F 1.39895 * 109.46927 * 180.02562 * 24 9 7 28 28 H 0.97006 * 120.00240 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00026 * 24.99526 * 11 9 7 30 30 H 1.09001 * 109.47117 * 149.72493 * 17 16 15 31 31 H 1.09004 * 109.46581 * 29.73145 * 17 16 15 32 32 H 1.09002 * 109.47153 * 304.99547 * 18 17 16 33 33 H 1.09001 * 109.46832 * 184.99738 * 18 17 16 34 34 H 0.96701 * 113.99881 * 180.02562 * 19 18 17 35 35 H 1.09008 * 109.50891 * 86.66579 * 22 20 16 36 36 H 1.08998 * 109.51621 * 206.81985 * 22 20 16 37 37 H 1.09000 * 109.45208 * 25.78305 * 23 14 12 38 38 H 1.09000 * 109.42549 * 265.84657 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 1 0.6247 -2.5563 -0.8919 11 7 2.2030 -3.6127 -0.0015 12 6 1.8372 -4.8121 -0.4956 13 8 0.7163 -4.9702 -0.9413 14 6 2.7909 -5.9272 -0.4958 15 7 3.9805 -5.7517 -0.0144 16 7 4.9197 -6.7880 -0.0043 17 6 6.0775 -6.7127 0.8901 18 6 7.2353 -6.0204 0.1684 19 8 6.8817 -4.6636 -0.1073 20 6 4.7632 -7.8579 -0.8085 21 8 5.5808 -8.7532 -0.7960 22 6 3.5678 -7.9375 -1.7238 23 6 2.3717 -7.2624 -1.0507 24 6 0.3709 -2.5810 1.2472 25 9 1.1749 -2.5076 2.3899 26 9 -0.5382 -1.5177 1.2476 27 9 -0.3281 -3.7928 1.2464 28 1 -0.4851 0.8401 -0.0004 29 1 3.0966 -3.4868 0.3542 30 1 6.3793 -7.7194 1.1792 31 1 5.8120 -6.1432 1.7808 32 1 7.4423 -6.5393 -0.7676 33 1 8.1231 -6.0433 0.8005 34 1 7.5707 -4.1628 -0.5652 35 1 3.7924 -7.4282 -2.6610 36 1 3.3315 -8.9826 -1.9240 37 1 1.5770 -7.1180 -1.7827 38 1 2.0082 -7.8940 -0.2401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001419856590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:36 Heat of formation + Delta-G solvation = -233.052464 kcal Electronic energy + Delta-G solvation = -30716.923252 eV Core-core repulsion = 25759.529197 eV Total energy + Delta-G solvation = -4957.394055 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.39762 -48.03112 -47.70504 -41.93614 -40.67421 -38.31031 -37.83508 -36.59722 -35.12384 -34.53628 -32.72346 -30.81919 -29.92104 -26.74443 -26.53080 -25.26389 -23.92239 -23.04384 -21.87604 -20.18262 -19.00370 -18.84069 -18.77469 -18.61360 -18.30997 -18.08518 -17.74403 -17.15531 -16.84555 -16.78455 -16.18813 -15.82525 -15.73283 -15.02655 -14.97121 -14.90677 -14.61836 -14.50590 -14.43268 -14.27502 -14.24220 -14.00968 -13.87101 -13.73244 -13.36461 -13.25716 -13.06037 -12.80669 -12.72431 -12.64222 -12.24295 -12.15464 -11.97888 -11.54948 -11.30466 -10.97005 -10.72377 -10.67863 -10.17550 -9.82046 -8.19891 -6.49734 -0.20642 1.02171 1.25545 1.47777 1.49922 1.62298 1.96710 2.06302 2.39821 2.54572 2.82090 2.95882 3.39006 3.47394 3.51665 3.78866 3.85568 3.89350 4.01684 4.08889 4.11879 4.18457 4.30091 4.44229 4.59010 4.70779 4.73494 4.76378 4.89382 5.06816 5.11205 5.31990 5.53525 5.66055 6.40074 6.53354 6.56627 6.80634 6.91543 7.07625 7.23471 8.72858 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.004001 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.107875 B = 6997.208374 C = 8144.389894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.019 3.981 3 Si 0.980 3.020 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.281 1.281 7 C -0.560 4.560 8 H 0.088 0.912 9 C 0.250 3.750 10 H 0.060 0.940 11 N -0.686 5.686 12 C 0.567 3.433 13 O -0.548 6.548 14 C 0.077 3.923 15 N -0.194 5.194 16 N -0.449 5.449 17 C 0.122 3.878 18 C 0.065 3.935 19 O -0.581 6.581 20 C 0.492 3.508 21 O -0.547 6.547 22 C -0.134 4.134 23 C -0.101 4.101 24 C 0.414 3.586 25 F -0.204 7.204 26 F -0.149 7.149 27 F -0.216 7.216 28 H 0.269 0.731 29 H 0.417 0.583 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.393 0.607 35 H 0.118 0.882 36 H 0.144 0.856 37 H 0.122 0.878 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.681 -11.756 -0.903 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.187 4.187 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.596 4.596 8 H 0.106 0.894 9 C 0.143 3.857 10 H 0.077 0.923 11 N -0.336 5.336 12 C 0.351 3.649 13 O -0.423 6.423 14 C -0.117 4.117 15 N -0.007 5.007 16 N -0.270 5.270 17 C 0.001 3.999 18 C -0.014 4.014 19 O -0.389 6.389 20 C 0.282 3.718 21 O -0.422 6.422 22 C -0.173 4.173 23 C -0.141 4.141 24 C 0.358 3.642 25 F -0.186 7.186 26 F -0.130 7.130 27 F -0.198 7.198 28 H 0.079 0.921 29 H 0.254 0.746 30 H 0.137 0.863 31 H 0.118 0.882 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.242 0.758 35 H 0.136 0.864 36 H 0.162 0.838 37 H 0.140 0.860 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.264 -11.881 -0.484 16.379 hybrid contribution 0.399 0.566 -0.072 0.696 sum 11.663 -11.316 -0.556 16.260 Atomic orbital electron populations 1.70514 1.07300 1.28131 1.44613 1.25919 0.95878 1.03429 0.93448 0.85152 0.79098 0.77658 0.77679 1.18199 1.20145 1.20706 1.21200 0.94416 0.88304 1.55697 0.89380 1.19478 0.88797 0.87040 0.90373 0.92256 1.45940 1.17555 1.09640 1.60491 1.17753 0.86422 0.82338 0.78398 1.90835 1.21031 1.82950 1.47509 1.24628 0.90526 0.97221 0.99329 1.74690 0.99331 1.13996 1.12667 1.49132 1.21767 1.16292 1.39815 1.21929 0.82565 1.02948 0.92427 1.22529 0.96705 0.82972 0.99178 1.86604 1.47186 1.23402 1.81687 1.21832 0.88366 0.80373 0.81237 1.90701 1.45995 1.37764 1.67721 1.21911 0.90242 1.06625 0.98543 1.20951 0.99671 0.90101 1.03380 1.23252 0.80806 0.72538 0.87601 1.92997 1.74212 1.96157 1.55217 1.93383 1.68868 1.54429 1.96294 1.93061 1.81557 1.48220 1.97001 0.92086 0.74562 0.86285 0.88221 0.94238 0.89400 0.75805 0.86351 0.83846 0.85998 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.17 9.50 21.45 0.20 -46.97 16 2 C 0.02 0.96 5.20 84.66 0.44 1.40 16 3 Si 0.98 40.14 29.54 68.60 2.03 42.17 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 5 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 6 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.56 -27.98 8.46 25.60 0.22 -27.77 16 8 H 0.09 4.18 7.74 -2.91 -0.02 4.15 16 9 C 0.25 12.24 2.21 44.25 0.10 12.34 16 10 H 0.06 3.25 7.58 -2.39 -0.02 3.24 16 11 N -0.69 -27.99 4.97 -450.05 -2.24 -30.23 16 12 C 0.57 21.40 7.30 86.46 0.63 22.04 16 13 O -0.55 -23.65 14.81 -4.20 -0.06 -23.71 16 14 C 0.08 2.23 6.77 45.07 0.31 2.54 16 15 N -0.19 -5.50 10.54 -43.57 -0.46 -5.96 16 16 N -0.45 -11.03 3.41 -463.05 -1.58 -12.61 16 17 C 0.12 2.44 6.08 86.38 0.53 2.96 16 18 C 0.06 1.13 7.39 71.98 0.53 1.66 16 19 O -0.58 -12.35 13.61 -148.98 -2.03 -14.38 16 20 C 0.49 11.65 7.55 87.68 0.66 12.32 16 21 O -0.55 -15.04 16.67 -2.94 -0.05 -15.09 16 22 C -0.13 -2.36 6.20 29.85 0.19 -2.17 16 23 C -0.10 -2.12 5.85 29.79 0.17 -1.94 16 24 C 0.41 20.98 2.81 71.98 0.20 21.18 16 25 F -0.20 -9.94 16.94 44.97 0.76 -9.18 16 26 F -0.15 -8.18 12.91 44.97 0.58 -7.60 16 27 F -0.22 -10.71 15.67 44.97 0.70 -10.00 16 28 H 0.27 13.78 8.31 -92.70 -0.77 13.01 16 29 H 0.42 15.80 7.83 -92.71 -0.73 15.07 16 30 H 0.12 2.05 7.42 -2.39 -0.02 2.04 16 31 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.39 5.06 9.12 -74.06 -0.68 4.38 16 35 H 0.12 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.12 2.49 7.54 -2.39 -0.02 2.47 16 38 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -67.37 340.10 1.59 -65.78 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -0.24 Total: 23.24 kcal Atomic # 6 Polarization: 40.57 SS G_CDS: 3.97 Total: 44.54 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -4.07 Total: -95.77 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -2.14 Total: -53.18 kcal Atomic # 9 Polarization: -28.83 SS G_CDS: 2.05 Total: -26.78 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -67.37 1.59 -65.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001419856590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.277 kcal (2) G-P(sol) polarization free energy of solvation -67.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds