Wall clock time and date at job start Tue Mar 31 2020 19:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99818 * 2 1 4 4 H 1.48500 * 109.46822 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47370 * 299.99936 * 3 2 1 6 6 H 1.48497 * 109.47029 * 60.00561 * 3 2 1 7 7 C 1.37878 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99787 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00156 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.46913 * 300.00068 * 9 7 2 11 11 N 1.46500 * 109.46896 * 180.02562 * 9 7 2 12 12 C 1.34780 * 119.99751 * 155.00283 * 11 9 7 13 13 O 1.21655 * 119.99976 * 359.97438 * 12 11 9 14 14 C 1.46733 * 119.99602 * 179.97438 * 12 11 9 15 15 N 1.29527 * 119.59647 * 0.27437 * 14 12 11 16 16 N 1.39858 * 121.26327 * 180.37642 * 15 14 12 17 17 C 1.46497 * 119.80345 * 198.89053 * 16 15 14 18 18 C 1.52997 * 109.47195 * 269.73157 * 17 16 15 19 19 O 1.42898 * 109.47319 * 64.99855 * 18 17 16 20 20 C 1.34757 * 120.39829 * 18.62142 * 16 15 14 21 21 O 1.21252 * 120.11695 * 179.97438 * 20 16 15 22 22 C 1.50764 * 119.75837 * 359.97438 * 20 16 15 23 23 C 1.50550 * 119.54206 * 180.02562 * 14 12 11 24 24 C 1.52997 * 109.46701 * 60.00498 * 9 7 2 25 25 F 1.39904 * 109.47085 * 180.02562 * 24 9 7 26 26 F 1.39902 * 109.47243 * 299.99621 * 24 9 7 27 27 F 1.39898 * 109.47553 * 60.00245 * 24 9 7 28 28 H 0.96998 * 119.99642 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00242 * 335.00207 * 11 9 7 30 30 H 1.09001 * 109.47117 * 149.72493 * 17 16 15 31 31 H 1.09004 * 109.46581 * 29.73145 * 17 16 15 32 32 H 1.09002 * 109.47153 * 304.99547 * 18 17 16 33 33 H 1.09001 * 109.46832 * 184.99738 * 18 17 16 34 34 H 0.96701 * 113.99881 * 180.02562 * 19 18 17 35 35 H 1.09008 * 109.50891 * 86.66579 * 22 20 16 36 36 H 1.08998 * 109.51621 * 206.81985 * 22 20 16 37 37 H 1.09000 * 109.45208 * 25.78305 * 23 14 12 38 38 H 1.09000 * 109.42549 * 265.84657 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8897 11 7 2.2031 -3.6127 -0.0005 12 6 1.8369 -4.8123 0.4927 13 8 0.7160 -4.9704 0.9383 14 6 2.7903 -5.9277 0.4922 15 7 3.9834 -5.7492 0.0207 16 7 4.9174 -6.7900 -0.0040 17 6 6.3437 -6.4853 -0.1418 18 6 6.7192 -6.4617 -1.6248 19 8 6.0383 -5.3846 -2.2715 20 6 4.5136 -8.0711 0.1037 21 8 5.3277 -8.9695 0.0812 22 6 3.0462 -8.3833 0.2521 23 6 2.3703 -7.2635 1.0451 24 6 0.3711 -2.5799 -1.2495 25 9 -0.3289 -3.7912 -1.2493 26 9 -0.5381 -1.5166 -1.2490 27 9 1.1750 -2.5056 -2.3921 28 1 -0.4849 0.8401 0.0004 29 1 3.0970 -3.4866 -0.3555 30 1 6.9294 -7.2493 0.3693 31 1 6.5515 -5.5113 0.3013 32 1 6.4296 -7.4049 -2.0880 33 1 7.7957 -6.3232 -1.7247 34 1 6.2295 -5.3094 -3.2164 35 1 2.5881 -8.4573 -0.7343 36 1 2.9267 -9.3285 0.7817 37 1 1.2879 -7.3649 0.9663 38 1 2.6659 -7.3317 2.0921 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001419856591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:40 Heat of formation + Delta-G solvation = -208.220614 kcal Electronic energy + Delta-G solvation = -30766.181985 eV Core-core repulsion = 25809.864720 eV Total energy + Delta-G solvation = -4956.317265 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.37407 -46.02835 -45.63522 -40.87178 -39.20541 -37.24259 -36.91078 -34.85624 -34.14477 -32.74923 -31.59150 -29.71137 -28.31265 -25.67551 -24.63783 -24.03051 -22.89281 -21.51148 -20.35350 -18.69449 -17.94717 -17.51907 -17.11352 -16.91720 -16.81643 -16.64764 -16.25096 -16.04560 -15.50102 -15.00499 -14.93324 -14.57821 -14.25132 -13.97629 -13.77613 -13.39262 -13.11239 -12.94736 -12.83110 -12.57846 -12.43958 -12.38711 -12.36528 -12.28270 -12.00174 -11.88442 -11.83911 -11.26979 -11.18857 -10.99014 -10.87362 -10.82348 -10.44762 -10.23210 -9.89090 -9.68093 -9.51672 -8.84019 -8.74996 -8.35107 -6.25892 -4.49364 1.00539 2.04702 2.29628 3.17848 3.25368 3.28769 3.41532 3.47959 3.85698 4.13828 4.20151 4.39404 4.51078 4.65666 4.82234 4.88439 4.88887 4.91315 4.94291 5.12306 5.27146 5.40917 5.50581 5.55494 5.62315 5.79430 5.83895 6.01573 6.06325 6.17839 6.83812 7.03674 7.40787 7.46471 7.53593 7.60931 7.79991 8.20790 8.45701 8.67828 9.18272 10.65835 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.003952 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.506441 B = 7082.756514 C = 8004.618602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.550 4.550 8 H 0.080 0.920 9 C 0.242 3.758 10 H 0.089 0.911 11 N -0.685 5.685 12 C 0.566 3.434 13 O -0.521 6.521 14 C 0.083 3.917 15 N -0.190 5.190 16 N -0.450 5.450 17 C 0.134 3.866 18 C 0.061 3.939 19 O -0.555 6.555 20 C 0.496 3.504 21 O -0.528 6.528 22 C -0.142 4.142 23 C -0.107 4.107 24 C 0.417 3.583 25 F -0.218 7.218 26 F -0.135 7.135 27 F -0.207 7.207 28 H 0.268 0.732 29 H 0.411 0.589 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.377 0.623 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.385 -11.652 -0.912 14.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.587 4.587 8 H 0.098 0.902 9 C 0.137 3.863 10 H 0.107 0.893 11 N -0.335 5.335 12 C 0.348 3.652 13 O -0.394 6.394 14 C -0.112 4.112 15 N -0.002 5.002 16 N -0.270 5.270 17 C 0.012 3.988 18 C -0.018 4.018 19 O -0.360 6.360 20 C 0.284 3.716 21 O -0.401 6.401 22 C -0.182 4.182 23 C -0.147 4.147 24 C 0.361 3.639 25 F -0.200 7.200 26 F -0.116 7.116 27 F -0.189 7.189 28 H 0.079 0.921 29 H 0.247 0.753 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.224 0.776 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.260 -11.477 -0.413 14.752 hybrid contribution 0.520 0.111 -0.882 1.029 sum 9.779 -11.366 -1.295 15.050 Atomic orbital electron populations 1.70406 1.05853 1.27330 1.43709 1.25077 0.95157 1.00142 0.93980 0.86141 0.79898 0.81855 0.77865 1.19315 1.20567 1.20569 1.20918 0.93964 0.87856 1.55958 0.90169 1.19863 0.88682 0.85716 0.92051 0.89344 1.46066 1.17911 1.09755 1.59745 1.17290 0.86071 0.82126 0.79735 1.90856 1.19472 1.82503 1.46609 1.25000 0.92667 0.97310 0.96273 1.74798 1.00356 1.14050 1.10961 1.48952 1.06473 1.02533 1.69041 1.21630 0.77424 1.03790 0.95938 1.22509 0.95703 0.90215 0.93372 1.86659 1.71468 1.51483 1.26390 1.21367 0.92400 0.82427 0.75360 1.90707 1.55568 1.44840 1.49016 1.21847 0.90905 1.01253 1.04207 1.20896 1.04709 0.88848 1.00270 1.23099 0.80836 0.72845 0.87105 1.93067 1.81478 1.48491 1.96981 1.93413 1.68322 1.53716 1.96192 1.93003 1.74369 1.96161 1.55360 0.92134 0.75307 0.87563 0.88233 0.93591 0.92307 0.77644 0.87461 0.86473 0.86443 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.48 9.50 55.43 0.53 -21.96 16 2 C 0.07 1.66 5.20 -17.82 -0.09 1.57 16 3 Si 0.92 19.81 29.54 -169.99 -5.02 14.79 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.55 -13.77 8.46 -34.44 -0.29 -14.06 16 8 H 0.08 1.93 7.74 -52.48 -0.41 1.52 16 9 C 0.24 5.85 2.21 -69.08 -0.15 5.70 16 10 H 0.09 2.34 7.57 -51.93 -0.39 1.95 16 11 N -0.68 -13.95 4.97 -56.23 -0.28 -14.23 16 12 C 0.57 10.72 7.31 -12.83 -0.09 10.63 16 13 O -0.52 -11.15 14.81 5.23 0.08 -11.07 16 14 C 0.08 1.24 6.77 -80.21 -0.54 0.69 16 15 N -0.19 -2.81 10.54 34.88 0.37 -2.44 16 16 N -0.45 -5.90 3.41 -60.28 -0.21 -6.10 16 17 C 0.13 1.44 6.08 -4.04 -0.02 1.42 16 18 C 0.06 0.60 7.39 37.16 0.27 0.87 16 19 O -0.56 -6.43 13.61 -35.23 -0.48 -6.91 16 20 C 0.50 6.42 7.55 -10.96 -0.08 6.34 16 21 O -0.53 -7.82 16.67 5.58 0.09 -7.72 16 22 C -0.14 -1.46 6.20 -27.88 -0.17 -1.64 16 23 C -0.11 -1.23 5.85 -27.98 -0.16 -1.39 16 24 C 0.42 10.45 2.81 37.16 0.10 10.56 16 25 F -0.22 -5.34 15.68 2.25 0.04 -5.31 16 26 F -0.14 -3.66 12.91 2.25 0.03 -3.63 16 27 F -0.21 -5.07 16.94 2.25 0.04 -5.03 16 28 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.41 7.84 7.83 -40.82 -0.32 7.52 16 30 H 0.11 1.01 7.42 -51.93 -0.39 0.62 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.38 2.79 9.12 45.56 0.42 3.21 16 35 H 0.11 1.04 8.14 -51.92 -0.42 0.62 16 36 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.12 1.33 7.54 -51.93 -0.39 0.94 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 340.11 15.07 5.13 5.13 Total: -1.00 -31.69 340.11 -4.08 -35.78 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -3.15 Total: 8.02 kcal Atomic # 6 Polarization: 21.92 SS G_CDS: -1.24 Total: 20.69 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.41 Total: -44.73 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.31 Total: -25.70 kcal Atomic # 9 Polarization: -14.07 SS G_CDS: 0.10 Total: -13.97 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.69 -4.08 -35.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001419856591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.445 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds