Wall clock time and date at job start Tue Mar 31 2020 19:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99818 * 2 1 4 4 H 1.48500 * 109.46822 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47370 * 299.99936 * 3 2 1 6 6 H 1.48497 * 109.47029 * 60.00561 * 3 2 1 7 7 C 1.37878 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99787 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00156 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.46913 * 300.00068 * 9 7 2 11 11 N 1.46500 * 109.46896 * 180.02562 * 9 7 2 12 12 C 1.34780 * 119.99751 * 155.00283 * 11 9 7 13 13 O 1.21655 * 119.99976 * 359.97438 * 12 11 9 14 14 C 1.46733 * 119.99602 * 179.97438 * 12 11 9 15 15 N 1.29527 * 119.59647 * 0.27437 * 14 12 11 16 16 N 1.39858 * 121.26327 * 180.37642 * 15 14 12 17 17 C 1.46497 * 119.80345 * 198.89053 * 16 15 14 18 18 C 1.52997 * 109.47195 * 269.73157 * 17 16 15 19 19 O 1.42898 * 109.47319 * 64.99855 * 18 17 16 20 20 C 1.34757 * 120.39829 * 18.62142 * 16 15 14 21 21 O 1.21252 * 120.11695 * 179.97438 * 20 16 15 22 22 C 1.50764 * 119.75837 * 359.97438 * 20 16 15 23 23 C 1.50550 * 119.54206 * 180.02562 * 14 12 11 24 24 C 1.52997 * 109.46701 * 60.00498 * 9 7 2 25 25 F 1.39904 * 109.47085 * 180.02562 * 24 9 7 26 26 F 1.39902 * 109.47243 * 299.99621 * 24 9 7 27 27 F 1.39898 * 109.47553 * 60.00245 * 24 9 7 28 28 H 0.96998 * 119.99642 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00242 * 335.00207 * 11 9 7 30 30 H 1.09001 * 109.47117 * 149.72493 * 17 16 15 31 31 H 1.09004 * 109.46581 * 29.73145 * 17 16 15 32 32 H 1.09002 * 109.47153 * 304.99547 * 18 17 16 33 33 H 1.09001 * 109.46832 * 184.99738 * 18 17 16 34 34 H 0.96701 * 113.99881 * 180.02562 * 19 18 17 35 35 H 1.09008 * 109.50891 * 86.66579 * 22 20 16 36 36 H 1.08998 * 109.51621 * 206.81985 * 22 20 16 37 37 H 1.09000 * 109.45208 * 25.78305 * 23 14 12 38 38 H 1.09000 * 109.42549 * 265.84657 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8897 11 7 2.2031 -3.6127 -0.0005 12 6 1.8369 -4.8123 0.4927 13 8 0.7160 -4.9704 0.9383 14 6 2.7903 -5.9277 0.4922 15 7 3.9834 -5.7492 0.0207 16 7 4.9174 -6.7900 -0.0040 17 6 6.3437 -6.4853 -0.1418 18 6 6.7192 -6.4617 -1.6248 19 8 6.0383 -5.3846 -2.2715 20 6 4.5136 -8.0711 0.1037 21 8 5.3277 -8.9695 0.0812 22 6 3.0462 -8.3833 0.2521 23 6 2.3703 -7.2635 1.0451 24 6 0.3711 -2.5799 -1.2495 25 9 -0.3289 -3.7912 -1.2493 26 9 -0.5381 -1.5166 -1.2490 27 9 1.1750 -2.5056 -2.3921 28 1 -0.4849 0.8401 0.0004 29 1 3.0970 -3.4866 -0.3555 30 1 6.9294 -7.2493 0.3693 31 1 6.5515 -5.5113 0.3013 32 1 6.4296 -7.4049 -2.0880 33 1 7.7957 -6.3232 -1.7247 34 1 6.2295 -5.3094 -3.2164 35 1 2.5881 -8.4573 -0.7343 36 1 2.9267 -9.3285 0.7817 37 1 1.2879 -7.3649 0.9663 38 1 2.6659 -7.3317 2.0921 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001419856591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:39 Heat of formation + Delta-G solvation = -233.093436 kcal Electronic energy + Delta-G solvation = -30767.260551 eV Core-core repulsion = 25809.864720 eV Total energy + Delta-G solvation = -4957.395832 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.39617 -48.03136 -47.70214 -41.93744 -40.67499 -38.31176 -37.84052 -36.59729 -35.12553 -34.53606 -32.72552 -30.81949 -29.92180 -26.74763 -26.53058 -25.26610 -23.92465 -23.04385 -21.87533 -20.18221 -19.00159 -18.84404 -18.79761 -18.60390 -18.31237 -18.05861 -17.73934 -17.22288 -16.84860 -16.75030 -16.13241 -15.94605 -15.63156 -15.07784 -14.95062 -14.91765 -14.62920 -14.52203 -14.43615 -14.27669 -14.19943 -14.00773 -13.86528 -13.72148 -13.41928 -13.24989 -13.03171 -12.81092 -12.73649 -12.64405 -12.23063 -12.15617 -11.98493 -11.55066 -11.30851 -10.97600 -10.72795 -10.67754 -10.17419 -9.82032 -8.19979 -6.49840 -0.20656 1.02191 1.25013 1.47853 1.49943 1.62275 1.98179 2.04965 2.39704 2.54846 2.81782 2.95826 3.38740 3.47264 3.51041 3.79326 3.86238 3.88903 4.01537 4.08757 4.11746 4.18172 4.29843 4.43938 4.59153 4.70450 4.73375 4.76368 4.89375 5.06811 5.11019 5.31954 5.53337 5.65967 6.39932 6.53150 6.56485 6.80486 6.90314 7.07614 7.23379 8.72803 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.003952 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.506441 B = 7082.756514 C = 8004.618602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.019 3.981 3 Si 0.981 3.019 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.560 4.560 8 H 0.088 0.912 9 C 0.250 3.750 10 H 0.060 0.940 11 N -0.686 5.686 12 C 0.567 3.433 13 O -0.548 6.548 14 C 0.077 3.923 15 N -0.194 5.194 16 N -0.449 5.449 17 C 0.122 3.878 18 C 0.064 3.936 19 O -0.582 6.582 20 C 0.492 3.508 21 O -0.546 6.546 22 C -0.135 4.135 23 C -0.101 4.101 24 C 0.415 3.585 25 F -0.217 7.217 26 F -0.149 7.149 27 F -0.204 7.204 28 H 0.269 0.731 29 H 0.417 0.583 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.038 0.962 33 H 0.089 0.911 34 H 0.393 0.607 35 H 0.115 0.885 36 H 0.144 0.856 37 H 0.120 0.880 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.057 -12.306 -0.928 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.187 4.187 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.597 4.597 8 H 0.107 0.893 9 C 0.143 3.857 10 H 0.078 0.922 11 N -0.336 5.336 12 C 0.351 3.649 13 O -0.423 6.423 14 C -0.117 4.117 15 N -0.007 5.007 16 N -0.270 5.270 17 C 0.002 3.998 18 C -0.015 4.015 19 O -0.389 6.389 20 C 0.282 3.718 21 O -0.421 6.421 22 C -0.175 4.175 23 C -0.141 4.141 24 C 0.358 3.642 25 F -0.199 7.199 26 F -0.130 7.130 27 F -0.186 7.186 28 H 0.079 0.921 29 H 0.254 0.746 30 H 0.138 0.862 31 H 0.120 0.880 32 H 0.057 0.943 33 H 0.107 0.893 34 H 0.242 0.758 35 H 0.133 0.867 36 H 0.162 0.838 37 H 0.138 0.862 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.962 -12.156 -0.440 16.374 hybrid contribution 0.045 0.267 -0.911 0.950 sum 11.006 -11.889 -1.351 16.258 Atomic orbital electron populations 1.70517 1.07303 1.28132 1.44601 1.25924 0.95882 1.03438 0.93446 0.85147 0.79089 0.77648 0.77679 1.18198 1.20707 1.20146 1.21204 0.94429 0.88305 1.55716 0.89350 1.19479 0.88815 0.87047 0.90370 0.92250 1.45939 1.17533 1.09628 1.60525 1.17754 0.86403 0.82345 0.78412 1.90835 1.20980 1.83036 1.47480 1.24628 0.92261 0.97261 0.97565 1.74688 1.00567 1.15254 1.10162 1.49132 1.06839 1.02360 1.68650 1.21933 0.76391 1.04402 0.97087 1.22544 0.97221 0.89399 0.92309 1.86604 1.72247 1.52107 1.27966 1.21810 0.93354 0.81984 0.74633 1.90701 1.56361 1.45165 1.49921 1.21914 0.88834 1.01792 1.04911 1.20951 1.04927 0.87065 1.01126 1.23247 0.80794 0.72531 0.87600 1.93062 1.81508 1.48282 1.97005 1.93385 1.68859 1.54452 1.96294 1.92997 1.74210 1.96147 1.55220 0.92087 0.74561 0.86229 0.88042 0.94344 0.89338 0.75839 0.86652 0.83778 0.86197 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.18 9.50 21.45 0.20 -46.97 16 2 C 0.02 0.95 5.20 84.65 0.44 1.39 16 3 Si 0.98 40.14 29.54 68.60 2.03 42.17 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 6 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 7 C -0.56 -27.99 8.46 25.60 0.22 -27.77 16 8 H 0.09 4.18 7.74 -2.91 -0.02 4.15 16 9 C 0.25 12.23 2.21 44.24 0.10 12.33 16 10 H 0.06 3.26 7.57 -2.39 -0.02 3.24 16 11 N -0.69 -27.99 4.97 -450.06 -2.24 -30.23 16 12 C 0.57 21.41 7.31 86.46 0.63 22.04 16 13 O -0.55 -23.66 14.81 -4.20 -0.06 -23.72 16 14 C 0.08 2.23 6.77 45.07 0.31 2.53 16 15 N -0.19 -5.49 10.54 -43.57 -0.46 -5.95 16 16 N -0.45 -11.01 3.41 -463.05 -1.58 -12.59 16 17 C 0.12 2.42 6.08 86.38 0.53 2.95 16 18 C 0.06 1.12 7.39 71.98 0.53 1.66 16 19 O -0.58 -12.59 13.61 -148.98 -2.03 -14.62 16 20 C 0.49 11.72 7.55 87.68 0.66 12.38 16 21 O -0.55 -15.07 16.67 -2.94 -0.05 -15.12 16 22 C -0.13 -2.43 6.20 29.85 0.19 -2.24 16 23 C -0.10 -2.11 5.85 29.79 0.17 -1.94 16 24 C 0.41 21.01 2.81 71.98 0.20 21.22 16 25 F -0.22 -10.72 15.68 44.97 0.70 -10.01 16 26 F -0.15 -8.19 12.91 44.97 0.58 -7.61 16 27 F -0.20 -9.97 16.94 44.97 0.76 -9.21 16 28 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 29 H 0.42 15.79 7.83 -92.71 -0.73 15.07 16 30 H 0.12 2.03 7.42 -2.39 -0.02 2.01 16 31 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.39 5.27 9.12 -74.06 -0.68 4.59 16 35 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.12 2.50 7.54 -2.39 -0.02 2.49 16 38 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -67.40 340.11 1.59 -65.81 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -0.24 Total: 23.52 kcal Atomic # 6 Polarization: 40.56 SS G_CDS: 3.97 Total: 44.53 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -4.07 Total: -95.74 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -2.14 Total: -53.46 kcal Atomic # 9 Polarization: -28.88 SS G_CDS: 2.05 Total: -26.83 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -67.40 1.59 -65.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001419856591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.282 kcal (2) G-P(sol) polarization free energy of solvation -67.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds