Wall clock time and date at job start Tue Mar 31 2020 20:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 117.00180 * 2 1 4 4 C 1.38754 * 120.05501 * 359.96669 * 3 2 1 5 5 C 1.38123 * 119.94486 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05290 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.11716 * 0.02562 * 6 5 4 8 8 C 1.38171 * 120.05256 * 359.95968 * 7 6 5 9 9 C 1.50696 * 120.02818 * 180.02562 * 8 7 6 10 10 F 1.39909 * 109.47092 * 6.80220 * 9 8 7 11 11 F 1.39892 * 109.47272 * 126.80257 * 9 8 7 12 12 C 1.50706 * 109.46889 * 246.80533 * 9 8 7 13 13 O 1.21302 * 120.00284 * 25.37561 * 12 9 8 14 14 N 1.34782 * 119.99768 * 205.37274 * 12 9 8 15 15 C 1.40589 * 119.99791 * 179.97438 * 14 12 9 16 16 C 1.40651 * 126.08450 * 359.69566 * 15 14 12 17 17 N 1.30907 * 108.38993 * 179.81207 * 16 15 14 18 18 N 1.40068 * 108.40532 * 0.44631 * 17 16 15 19 19 C 1.37325 * 126.07261 * 179.69665 * 18 17 16 20 20 H 1.07992 * 120.00183 * 180.02562 * 19 18 17 21 21 C 1.38986 * 119.99649 * 0.02562 * 19 18 17 22 22 N 1.31298 * 120.00191 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99980 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47580 * 59.99662 * 23 21 19 25 25 H 1.48503 * 109.47139 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47150 * 299.99757 * 23 21 19 27 27 C 1.35684 * 126.08527 * 180.02562 * 15 14 12 28 28 H 1.08999 * 109.46910 * 299.99445 * 1 2 3 29 29 H 1.08998 * 109.47214 * 59.99499 * 1 2 3 30 30 H 1.09000 * 109.47357 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.02938 * 0.03105 * 4 3 2 32 32 H 1.07995 * 119.97064 * 180.29299 * 5 4 3 33 33 H 1.08007 * 119.94175 * 180.02562 * 6 5 4 34 34 H 1.07998 * 119.97501 * 179.97438 * 7 6 5 35 35 H 0.97000 * 119.99722 * 0.02562 * 14 12 9 36 36 H 1.08004 * 125.80475 * 359.96632 * 16 15 14 37 37 H 0.97001 * 120.00043 * 179.97438 * 22 21 19 38 38 H 1.08006 * 126.24289 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0007 5 6 1.9209 3.6048 -0.0012 6 6 3.3020 3.6757 -0.0016 7 6 4.0560 2.5171 -0.0020 8 6 3.4311 1.2848 -0.0011 9 6 4.2537 0.0221 -0.0010 10 9 5.6058 0.3464 0.1545 11 9 3.8467 -0.7994 1.0556 12 6 4.0584 -0.7048 -1.3066 13 8 3.7334 -0.0899 -2.3004 14 7 4.2448 -2.0382 -1.3700 15 6 4.0621 -2.7164 -2.5878 16 6 3.6817 -2.1350 -3.8108 17 7 3.6190 -3.0794 -4.7152 18 7 3.9454 -4.2976 -4.1058 19 6 3.9860 -5.5244 -4.7216 20 1 4.2511 -6.4046 -4.1548 21 6 3.6860 -5.6332 -6.0743 22 7 3.3642 -4.5630 -6.7635 23 14 3.7405 -7.3020 -6.9118 24 1 2.7731 -8.2174 -6.2551 25 1 3.3830 -7.1485 -8.3450 26 1 5.1096 -7.8667 -6.8015 27 6 4.2152 -4.0491 -2.7912 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2129 2.3204 -0.0007 32 1 1.3341 4.5113 0.0030 33 1 3.7923 4.6381 -0.0016 34 1 5.1345 2.5752 -0.0027 35 1 4.5044 -2.5299 -0.5751 36 1 3.4786 -1.0872 -3.9762 37 1 3.1552 -4.6389 -7.7077 38 1 4.4993 -4.7799 -2.0484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433624220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:40 Heat of formation + Delta-G solvation = -42.443344 kcal Electronic energy + Delta-G solvation = -29095.001666 eV Core-core repulsion = 24576.642267 eV Total energy + Delta-G solvation = -4518.359399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.15297 -47.14023 -40.40012 -39.85534 -38.49500 -37.52499 -34.37453 -33.19675 -32.28015 -30.37088 -30.27397 -28.36107 -27.51895 -26.66676 -24.80675 -22.61437 -22.33698 -21.09769 -20.54603 -19.52239 -18.56049 -18.19761 -17.60967 -17.35186 -17.01837 -15.95332 -15.82382 -15.50217 -15.21804 -15.02367 -14.84476 -14.64681 -14.37705 -13.96967 -13.86432 -13.60993 -13.40880 -13.19712 -13.08179 -12.96582 -12.74839 -12.54077 -12.07341 -11.74445 -11.67004 -11.47084 -11.26601 -11.25558 -11.09126 -10.96216 -10.57486 -10.26049 -9.41492 -9.21512 -9.20026 -8.85557 -8.40133 -8.09913 -6.76722 -6.58169 -4.25885 0.96232 1.25303 2.47352 2.94256 2.98622 3.05169 3.08099 3.11484 3.47193 3.61504 3.75934 3.83024 4.11856 4.32873 4.51400 4.66067 4.69588 4.88785 4.93567 5.00015 5.03350 5.07468 5.11431 5.24772 5.40636 5.44386 5.63836 6.02862 6.10739 6.21932 6.26935 6.37964 6.52945 6.79501 6.90687 6.98849 7.17014 7.18537 7.81300 8.01220 8.20047 8.45842 8.70349 9.33809 9.62446 10.37648 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.002915 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.326346 B = 9601.593460 C = 9921.982952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.304 6.304 3 C 0.176 3.824 4 C -0.213 4.213 5 C -0.060 4.060 6 C -0.163 4.163 7 C -0.041 4.041 8 C -0.173 4.173 9 C 0.345 3.655 10 F -0.180 7.180 11 F -0.181 7.181 12 C 0.478 3.522 13 O -0.496 6.496 14 N -0.599 5.599 15 C -0.064 4.064 16 C -0.028 4.028 17 N -0.259 5.259 18 N -0.140 5.140 19 C -0.323 4.323 20 H 0.117 0.883 21 C 0.046 3.954 22 N -0.769 5.769 23 Si 0.936 3.064 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.266 1.266 27 C -0.078 4.078 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.403 0.597 36 H 0.175 0.825 37 H 0.276 0.724 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.258 11.230 14.988 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.216 6.216 3 C 0.129 3.871 4 C -0.232 4.232 5 C -0.078 4.078 6 C -0.181 4.181 7 C -0.059 4.059 8 C -0.175 4.175 9 C 0.305 3.695 10 F -0.161 7.161 11 F -0.162 7.162 12 C 0.258 3.742 13 O -0.370 6.370 14 N -0.241 5.241 15 C -0.169 4.169 16 C -0.204 4.204 17 N -0.090 5.090 18 N 0.093 4.907 19 C -0.455 4.455 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.395 5.395 23 Si 0.759 3.241 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.191 1.191 27 C -0.230 4.230 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.237 0.763 36 H 0.192 0.808 37 H 0.086 0.914 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.705 11.235 12.818 17.443 hybrid contribution 0.217 -0.742 1.151 1.386 sum -3.488 10.493 13.969 17.816 Atomic orbital electron populations 1.23120 0.77721 1.04554 1.01244 1.86178 1.21980 1.25988 1.87456 1.18601 0.90755 0.85194 0.92513 1.21191 1.00253 0.91931 1.09831 1.21059 0.94743 0.97034 0.94955 1.20990 0.93833 0.98159 1.05106 1.20840 1.00751 0.90321 0.94033 1.19083 0.91055 0.93776 1.13575 1.19499 0.77096 0.88135 0.84784 1.93033 1.33809 1.93195 1.96082 1.93061 1.90221 1.73564 1.59334 1.20069 0.81865 0.83167 0.89052 1.90654 1.45936 1.66150 1.34280 1.42355 1.64545 1.06124 1.11079 1.17231 1.22174 0.91084 0.86397 1.24074 1.06580 1.00049 0.89686 1.78271 1.24166 0.87782 1.18813 1.44561 1.36172 1.06256 1.03678 1.19858 1.49264 0.82569 0.93800 0.86540 1.25652 0.95357 0.99531 0.96557 1.70207 1.32329 1.28362 1.08612 0.85880 0.79438 0.80316 0.78431 1.19127 1.20116 1.19117 1.21260 1.17743 0.94741 0.89213 0.92569 0.92264 0.87812 0.84780 0.85305 0.85148 0.84270 0.76334 0.80816 0.91352 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.30 -4.52 8.91 -19.43 -0.17 -4.69 16 3 C 0.18 2.54 6.39 -39.22 -0.25 2.29 16 4 C -0.21 -2.42 9.04 -39.43 -0.36 -2.78 16 5 C -0.06 -0.59 10.04 -39.61 -0.40 -0.99 16 6 C -0.16 -1.67 10.04 -39.56 -0.40 -2.07 16 7 C -0.04 -0.52 9.42 -39.61 -0.37 -0.90 16 8 C -0.17 -2.62 4.46 -104.47 -0.47 -3.08 16 9 C 0.35 5.63 2.01 -29.03 -0.06 5.57 16 10 F -0.18 -2.78 15.73 2.25 0.04 -2.75 16 11 F -0.18 -2.81 15.75 2.25 0.04 -2.78 16 12 C 0.48 9.35 6.52 -10.98 -0.07 9.27 16 13 O -0.50 -11.09 13.38 5.54 0.07 -11.02 16 14 N -0.60 -11.73 5.40 -10.00 -0.05 -11.78 16 15 C -0.06 -1.51 6.90 -83.84 -0.58 -2.09 16 16 C -0.03 -0.76 10.85 -17.04 -0.18 -0.94 16 17 N -0.26 -7.57 10.40 30.80 0.32 -7.25 16 18 N -0.14 -3.84 3.74 -11.41 -0.04 -3.89 16 19 C -0.32 -8.51 10.25 -14.81 -0.15 -8.67 16 20 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 21 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 22 N -0.77 -21.40 11.81 55.49 0.66 -20.74 16 23 Si 0.94 18.82 29.55 -169.99 -5.02 13.79 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 25 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 27 C -0.08 -1.87 11.49 -16.39 -0.19 -2.06 16 28 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 29 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.13 1.18 6.30 -52.49 -0.33 0.85 16 32 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 34 H 0.14 1.55 7.18 -52.49 -0.38 1.18 16 35 H 0.40 6.53 8.37 -40.82 -0.34 6.19 16 36 H 0.18 4.59 5.92 -52.48 -0.31 4.28 16 37 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.15 2.93 8.06 -52.48 -0.42 2.51 16 LS Contribution 340.26 15.07 5.13 5.13 Total: -1.00 -33.96 340.26 -5.02 -38.98 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -3.39 Total: 11.04 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -2.58 Total: -4.05 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.88 Total: -43.66 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.10 Total: -15.71 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.07 Total: -5.53 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.96 -5.02 -38.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433624220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.463 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds