Wall clock time and date at job start Tue Mar 31 2020 20:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 117.00180 * 2 1 4 4 C 1.38754 * 120.05501 * 359.96669 * 3 2 1 5 5 C 1.38123 * 119.94486 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05290 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.11716 * 0.02562 * 6 5 4 8 8 C 1.38171 * 120.05256 * 359.95968 * 7 6 5 9 9 C 1.50696 * 120.02818 * 180.02562 * 8 7 6 10 10 F 1.39909 * 109.47092 * 6.80220 * 9 8 7 11 11 F 1.39892 * 109.47272 * 126.80257 * 9 8 7 12 12 C 1.50706 * 109.46889 * 246.80533 * 9 8 7 13 13 O 1.21302 * 120.00284 * 25.37561 * 12 9 8 14 14 N 1.34782 * 119.99768 * 205.37274 * 12 9 8 15 15 C 1.40589 * 119.99791 * 179.97438 * 14 12 9 16 16 C 1.40651 * 126.08450 * 359.69566 * 15 14 12 17 17 N 1.30907 * 108.38993 * 179.81207 * 16 15 14 18 18 N 1.40068 * 108.40532 * 0.44631 * 17 16 15 19 19 C 1.37325 * 126.07261 * 179.69665 * 18 17 16 20 20 H 1.07992 * 120.00183 * 180.02562 * 19 18 17 21 21 C 1.38986 * 119.99649 * 0.02562 * 19 18 17 22 22 N 1.31298 * 120.00191 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99980 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47580 * 59.99662 * 23 21 19 25 25 H 1.48503 * 109.47139 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47150 * 299.99757 * 23 21 19 27 27 C 1.35684 * 126.08527 * 180.02562 * 15 14 12 28 28 H 1.08999 * 109.46910 * 299.99445 * 1 2 3 29 29 H 1.08998 * 109.47214 * 59.99499 * 1 2 3 30 30 H 1.09000 * 109.47357 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.02938 * 0.03105 * 4 3 2 32 32 H 1.07995 * 119.97064 * 180.29299 * 5 4 3 33 33 H 1.08007 * 119.94175 * 180.02562 * 6 5 4 34 34 H 1.07998 * 119.97501 * 179.97438 * 7 6 5 35 35 H 0.97000 * 119.99722 * 0.02562 * 14 12 9 36 36 H 1.08004 * 125.80475 * 359.96632 * 16 15 14 37 37 H 0.97001 * 120.00043 * 179.97438 * 22 21 19 38 38 H 1.08006 * 126.24289 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0007 5 6 1.9209 3.6048 -0.0012 6 6 3.3020 3.6757 -0.0016 7 6 4.0560 2.5171 -0.0020 8 6 3.4311 1.2848 -0.0011 9 6 4.2537 0.0221 -0.0010 10 9 5.6058 0.3464 0.1545 11 9 3.8467 -0.7994 1.0556 12 6 4.0584 -0.7048 -1.3066 13 8 3.7334 -0.0899 -2.3004 14 7 4.2448 -2.0382 -1.3700 15 6 4.0621 -2.7164 -2.5878 16 6 3.6817 -2.1350 -3.8108 17 7 3.6190 -3.0794 -4.7152 18 7 3.9454 -4.2976 -4.1058 19 6 3.9860 -5.5244 -4.7216 20 1 4.2511 -6.4046 -4.1548 21 6 3.6860 -5.6332 -6.0743 22 7 3.3642 -4.5630 -6.7635 23 14 3.7405 -7.3020 -6.9118 24 1 2.7731 -8.2174 -6.2551 25 1 3.3830 -7.1485 -8.3450 26 1 5.1096 -7.8667 -6.8015 27 6 4.2152 -4.0491 -2.7912 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2129 2.3204 -0.0007 32 1 1.3341 4.5113 0.0030 33 1 3.7923 4.6381 -0.0016 34 1 5.1345 2.5752 -0.0027 35 1 4.5044 -2.5299 -0.5751 36 1 3.4786 -1.0872 -3.9762 37 1 3.1552 -4.6389 -7.7077 38 1 4.4993 -4.7799 -2.0484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433624220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:39 Heat of formation + Delta-G solvation = -64.870436 kcal Electronic energy + Delta-G solvation = -29095.974178 eV Core-core repulsion = 24576.642267 eV Total energy + Delta-G solvation = -4519.331910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.42759 -48.40666 -41.83329 -41.26431 -40.18892 -38.43487 -36.14099 -35.07322 -33.29144 -32.30494 -31.22160 -30.09505 -28.52166 -27.96991 -26.65406 -23.85612 -23.22340 -22.91020 -22.02525 -21.38543 -19.85377 -19.56095 -19.04508 -18.84519 -18.14231 -17.46636 -17.02328 -16.79440 -16.69040 -16.45290 -16.04172 -15.88227 -15.62208 -15.54082 -15.22778 -14.96032 -14.91667 -14.69257 -14.55090 -14.42624 -13.66297 -13.63668 -13.47787 -13.37940 -12.96575 -12.89817 -12.89336 -12.55274 -12.13796 -12.09334 -11.99603 -11.97198 -11.07312 -11.02311 -10.86892 -10.15479 -10.14321 -9.30985 -8.66497 -8.49529 -6.28233 0.04232 0.36981 0.86530 1.36306 1.38734 1.51150 1.57591 1.78476 2.12301 2.21384 2.36596 2.45747 2.64554 2.69531 2.98716 3.06577 3.37962 3.57158 3.87834 3.97586 4.20316 4.33265 4.33835 4.37498 4.40485 4.48921 4.53668 4.67344 4.81143 4.94186 4.96115 5.15725 5.18217 5.27226 5.29520 5.43677 5.72860 5.90081 6.18692 6.27928 6.38334 6.65893 6.95951 7.39898 7.60276 8.49516 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.002915 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.326346 B = 9601.593460 C = 9921.982952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.151 3.849 4 C -0.217 4.217 5 C -0.053 4.053 6 C -0.158 4.158 7 C -0.056 4.056 8 C -0.208 4.208 9 C 0.358 3.642 10 F -0.176 7.176 11 F -0.177 7.177 12 C 0.477 3.523 13 O -0.525 6.525 14 N -0.596 5.596 15 C -0.053 4.053 16 C -0.051 4.051 17 N -0.306 5.306 18 N -0.162 5.162 19 C -0.354 4.354 20 H 0.143 0.857 21 C -0.005 4.005 22 N -0.822 5.822 23 Si 1.021 2.979 24 H -0.253 1.253 25 H -0.277 1.277 26 H -0.253 1.253 27 C -0.075 4.075 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.158 0.842 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.146 0.854 35 H 0.420 0.580 36 H 0.167 0.833 37 H 0.278 0.722 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.503 11.410 16.551 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.105 3.895 4 C -0.235 4.235 5 C -0.070 4.070 6 C -0.176 4.176 7 C -0.074 4.074 8 C -0.210 4.210 9 C 0.318 3.682 10 F -0.157 7.157 11 F -0.158 7.158 12 C 0.259 3.741 13 O -0.401 6.401 14 N -0.240 5.240 15 C -0.158 4.158 16 C -0.226 4.226 17 N -0.138 5.138 18 N 0.070 4.930 19 C -0.485 4.485 20 H 0.160 0.840 21 C -0.217 4.217 22 N -0.449 5.449 23 Si 0.839 3.161 24 H -0.177 1.177 25 H -0.202 1.202 26 H -0.177 1.177 27 C -0.226 4.226 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.175 0.825 32 H 0.185 0.815 33 H 0.181 0.819 34 H 0.164 0.836 35 H 0.257 0.743 36 H 0.184 0.816 37 H 0.088 0.912 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -3.939 11.427 14.446 18.835 hybrid contribution 0.273 -0.652 0.780 1.053 sum -3.665 10.775 15.226 19.010 Atomic orbital electron populations 1.23352 0.75981 1.05366 1.02662 1.86111 1.24032 1.26949 1.87848 1.18916 0.90902 0.86035 0.93697 1.21563 1.01453 0.91537 1.08968 1.21574 0.94956 0.97855 0.92651 1.21427 0.94246 0.98631 1.03319 1.21103 1.01497 0.90390 0.94363 1.19240 0.91580 0.93687 1.16459 1.19150 0.77658 0.88512 0.82907 1.93037 1.33572 1.93127 1.95920 1.93065 1.90226 1.73689 1.58808 1.20752 0.80295 0.82908 0.90111 1.90629 1.46727 1.66866 1.35913 1.42325 1.64788 1.06453 1.10400 1.17286 1.20369 0.91214 0.86973 1.24093 1.07833 0.99653 0.91032 1.78172 1.25943 0.89085 1.20584 1.44862 1.37106 1.06168 1.04869 1.20647 1.49901 0.83032 0.94900 0.83983 1.26905 0.93948 1.03942 0.96919 1.70386 1.34050 1.31414 1.09060 0.84630 0.80164 0.74563 0.76717 1.17655 1.20214 1.17742 1.21960 1.16136 0.95592 0.88871 0.89873 0.92020 0.87448 0.82464 0.81453 0.81899 0.83593 0.74323 0.81583 0.91236 0.79345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.34 -10.02 8.91 -92.44 -0.82 -10.84 16 3 C 0.15 4.27 6.39 22.51 0.14 4.42 16 4 C -0.22 -4.48 9.04 22.37 0.20 -4.28 16 5 C -0.05 -0.86 10.04 22.25 0.22 -0.64 16 6 C -0.16 -2.82 10.04 22.28 0.22 -2.59 16 7 C -0.06 -1.34 9.42 22.25 0.21 -1.13 16 8 C -0.21 -6.23 4.46 -19.77 -0.09 -6.32 16 9 C 0.36 11.67 2.01 29.10 0.06 11.72 16 10 F -0.18 -5.37 15.73 44.97 0.71 -4.66 16 11 F -0.18 -5.46 15.75 44.97 0.71 -4.75 16 12 C 0.48 18.94 6.52 87.66 0.57 19.52 16 13 O -0.53 -24.30 13.38 -3.10 -0.04 -24.34 16 14 N -0.60 -23.34 5.40 -303.91 -1.64 -24.98 16 15 C -0.05 -2.53 6.90 37.73 0.26 -2.27 16 16 C -0.05 -2.84 10.85 85.42 0.93 -1.92 16 17 N -0.31 -18.59 10.40 -56.46 -0.59 -19.18 16 18 N -0.16 -9.06 3.74 -190.01 -0.71 -9.77 16 19 C -0.35 -18.70 10.25 84.01 0.86 -17.84 16 20 H 0.14 6.47 7.83 -2.91 -0.02 6.45 16 21 C -0.01 -0.26 5.50 84.95 0.47 0.21 16 22 N -0.82 -47.21 11.81 21.66 0.26 -46.95 16 23 Si 1.02 38.25 29.55 68.60 2.03 40.28 16 24 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 25 H -0.28 -10.29 7.11 99.48 0.71 -9.58 16 26 H -0.25 -8.89 7.11 99.48 0.71 -8.19 16 27 C -0.07 -3.56 11.49 83.38 0.96 -2.60 16 28 H 0.08 1.15 7.66 -2.39 -0.02 1.13 16 29 H 0.06 1.16 7.66 -2.39 -0.02 1.14 16 30 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.16 2.35 6.30 -2.91 -0.02 2.33 16 32 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 34 H 0.15 3.13 7.18 -2.91 -0.02 3.11 16 35 H 0.42 13.29 8.37 -92.71 -0.78 12.51 16 36 H 0.17 9.31 5.92 -2.91 -0.02 9.30 16 37 H 0.28 14.68 8.31 -92.71 -0.77 13.91 16 38 H 0.19 7.09 8.06 -2.91 -0.02 7.07 16 Total: -1.00 -77.64 340.26 6.40 -71.24 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: 0.37 Total: 36.15 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 6.13 Total: -2.19 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -2.68 Total: -100.88 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.86 Total: -35.18 kcal Atomic # 9 Polarization: -10.83 SS G_CDS: 1.42 Total: -9.41 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -77.64 6.40 -71.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433624220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.371 kcal (2) G-P(sol) polarization free energy of solvation -77.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds