Wall clock time and date at job start Tue Mar 31 2020 20:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28780 * 125.44720 * 2 1 4 4 N 1.29006 * 108.72551 * 180.02562 * 3 2 1 5 5 C 1.33317 * 107.34889 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.54433 * 179.97438 * 5 4 3 7 7 N 1.46506 * 109.47214 * 90.02276 * 6 5 4 8 8 S 1.65597 * 120.00079 * 164.72113 * 7 6 5 9 9 O 1.42100 * 106.40448 * 178.54099 * 8 7 6 10 10 O 1.42103 * 106.40365 * 311.46606 * 8 7 6 11 11 C 1.76197 * 107.21750 * 65.00357 * 8 7 6 12 12 C 1.38239 * 119.99894 * 269.72963 * 11 8 7 13 13 C 1.38239 * 119.99549 * 179.76748 * 12 11 8 14 14 C 1.38233 * 120.00265 * 0.48002 * 13 12 11 15 15 C 1.50699 * 119.99834 * 179.77022 * 14 13 12 16 16 C 1.50702 * 109.47237 * 270.02242 * 15 14 13 17 17 H 1.08004 * 119.99932 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99911 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00489 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99866 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.47188 * 89.99753 * 20 18 16 22 22 H 1.48509 * 109.47092 * 209.99742 * 20 18 16 23 23 H 1.48502 * 109.46871 * 329.99537 * 20 18 16 24 24 C 1.38232 * 119.99907 * 359.79004 * 14 13 12 25 25 C 1.38230 * 120.00363 * 89.99871 * 11 8 7 26 26 N 1.28884 * 125.44772 * 180.34054 * 2 1 3 27 27 H 1.09007 * 109.47113 * 89.97067 * 1 2 3 28 28 H 1.08995 * 109.46774 * 209.97016 * 1 2 3 29 29 H 1.09001 * 109.46786 * 329.97494 * 1 2 3 30 30 H 1.08999 * 109.47652 * 330.02433 * 6 5 4 31 31 H 1.09000 * 109.47217 * 210.02539 * 6 5 4 32 32 H 0.97005 * 119.99811 * 345.00092 * 7 6 5 33 33 H 1.07994 * 119.99903 * 359.97438 * 12 11 8 34 34 H 1.08001 * 119.99711 * 180.24792 * 13 12 11 35 35 H 1.09004 * 109.47324 * 30.02256 * 15 14 13 36 36 H 1.09007 * 109.47179 * 150.02410 * 15 14 13 37 37 H 0.96997 * 120.00344 * 180.02562 * 19 18 16 38 38 H 1.08005 * 119.99765 * 179.97438 * 24 14 13 39 39 H 1.08008 * 119.99761 * 0.02562 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0491 0.0000 4 7 3.4474 0.6779 -0.0005 5 6 3.4620 -0.6552 -0.0015 6 6 4.6825 -1.5392 -0.0029 7 7 5.0786 -1.8271 1.3779 8 16 6.1369 -3.0605 1.6957 9 8 6.3426 -3.0605 3.1017 10 8 5.6610 -4.1920 0.9797 11 6 7.6806 -2.6239 0.9670 12 6 7.9619 -2.9994 -0.3333 13 6 9.1712 -2.6527 -0.9065 14 6 10.1030 -1.9391 -0.1762 15 6 11.4232 -1.5657 -0.7995 16 6 12.4283 -2.6582 -0.5398 17 1 12.1399 -3.5351 0.0210 18 6 13.7161 -2.5378 -1.0171 19 7 14.0675 -1.4699 -1.6994 20 14 14.9621 -3.8917 -0.6945 21 1 14.9110 -4.8845 -1.7976 22 1 16.3238 -3.3039 -0.6203 23 1 14.6420 -4.5630 0.5909 24 6 9.8238 -1.5684 1.1259 25 6 8.6126 -1.9107 1.6974 26 7 2.2125 -1.0499 -0.0062 27 1 -0.3634 0.0005 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 5.4986 -1.0311 -0.5165 31 1 4.4544 -2.4726 -0.5176 32 1 4.7178 -1.2978 2.1063 33 1 7.2357 -3.5607 -0.9024 34 1 9.3894 -2.9426 -1.9237 35 1 11.2946 -1.4384 -1.8744 36 1 11.7800 -0.6326 -0.3632 37 1 14.9734 -1.3853 -2.0355 38 1 10.5521 -1.0113 1.6966 39 1 8.3947 -1.6214 2.7150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463630464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:09 Heat of formation + Delta-G solvation = 78.707202 kcal Electronic energy + Delta-G solvation = -25576.775672 eV Core-core repulsion = 21649.802893 eV Total energy + Delta-G solvation = -3926.972779 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.75567 -38.80434 -37.24793 -36.47252 -35.82171 -35.07071 -33.67413 -33.22512 -31.55650 -30.57522 -29.42813 -27.43167 -26.99417 -23.73113 -23.53075 -22.76037 -22.31600 -20.91484 -19.60296 -18.21191 -18.04821 -17.73813 -17.34212 -16.53757 -16.42249 -15.34008 -15.11049 -14.75083 -14.62498 -14.36936 -14.33450 -14.04521 -13.93877 -13.73804 -13.40844 -13.10240 -12.83170 -12.40369 -12.23405 -12.10586 -12.06714 -11.98008 -11.70357 -11.47785 -11.39010 -11.35662 -10.97749 -10.90799 -10.63458 -10.54451 -10.47581 -9.93761 -9.72177 -9.60470 -8.58665 -8.52939 -8.38778 -6.16146 -4.21177 0.36268 0.80813 1.31444 1.50283 1.69764 1.80160 3.04651 3.25186 3.31765 3.34825 3.36171 3.71513 3.78148 4.11183 4.31498 4.34457 4.38482 4.43721 4.62470 4.75371 5.12919 5.17251 5.22546 5.23415 5.27402 5.35030 5.39393 5.67922 5.73029 5.81489 5.91841 6.25025 6.33124 6.49656 6.63195 6.84320 6.91821 7.30250 7.43814 7.60069 7.78896 7.93592 8.14075 8.83635 9.43769 10.93847 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020874 B = 0.002400 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.033957 B =11662.913512 C =12408.710460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.141 5.141 3 N -0.061 5.061 4 N -0.266 5.266 5 C 0.160 3.840 6 C 0.220 3.780 7 N -1.117 6.117 8 S 2.702 3.298 9 O -0.960 6.960 10 O -0.959 6.959 11 C -0.705 4.705 12 C -0.026 4.026 13 C -0.145 4.145 14 C 0.028 3.972 15 C 0.039 3.961 16 C -0.517 4.517 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.145 4.145 25 C -0.019 4.019 26 N -0.290 5.290 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.419 0.581 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.129 0.871 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.153 3.124 2.983 27.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.053 5.053 3 N -0.055 5.055 4 N -0.138 5.138 5 C -0.124 4.124 6 C 0.091 3.909 7 N -0.876 5.876 8 S 2.795 3.205 9 O -0.950 6.950 10 O -0.949 6.949 11 C -0.795 4.795 12 C -0.045 4.045 13 C -0.164 4.164 14 C 0.028 3.972 15 C 0.002 3.998 16 C -0.555 4.555 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.164 4.164 25 C -0.039 4.039 26 N -0.142 5.142 27 H 0.122 0.878 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.253 0.747 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.147 0.853 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -27.553 2.894 3.197 27.889 hybrid contribution 1.276 -0.375 0.007 1.330 sum -26.277 2.520 3.204 26.591 Atomic orbital electron populations 1.22487 0.68885 1.07022 1.06233 1.50130 1.10898 1.00911 1.43383 1.79039 0.96453 1.14215 1.15761 1.75932 1.09837 1.10905 1.17119 1.25414 0.92960 0.90680 1.03362 1.19400 0.89926 0.97848 0.83775 1.55638 1.63087 1.55578 1.13313 1.01506 0.73201 0.72516 0.73305 1.93581 1.86018 1.85976 1.29450 1.93568 1.79917 1.46867 1.74585 1.30235 1.22300 1.19806 1.07164 1.20798 0.97323 0.94218 0.92191 1.21248 0.93561 1.00494 1.01062 1.21134 0.95691 0.87552 0.92850 1.18549 0.86960 0.97781 0.96519 1.20966 0.94669 1.04297 1.35576 0.92271 1.25006 0.98379 0.95941 0.94863 1.69945 1.19397 1.27456 1.36156 0.86479 0.80335 0.81705 0.78881 1.20455 1.21056 1.19697 1.21255 0.96726 1.02580 0.95834 1.20773 0.92845 0.92173 0.98091 1.74761 1.03257 1.15251 1.20913 0.87840 0.86948 0.86809 0.87708 0.87061 0.74716 0.85091 0.85267 0.94664 0.94672 0.92631 0.85300 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.18 11.63 59.85 0.70 0.88 16 2 N -0.14 -1.13 4.40 -16.69 -0.07 -1.20 16 3 N -0.06 -0.64 13.25 60.35 0.80 0.16 16 4 N -0.27 -3.16 12.50 32.44 0.41 -2.75 16 5 C 0.16 1.70 7.76 -156.63 -1.22 0.48 16 6 C 0.22 2.09 6.85 -5.19 -0.04 2.05 16 7 N -1.12 -11.31 5.99 -11.65 -0.07 -11.38 16 8 S 2.70 35.65 5.74 -107.50 -0.62 35.03 16 9 O -0.96 -15.03 17.28 -57.17 -0.99 -16.01 16 10 O -0.96 -14.54 16.74 -57.17 -0.96 -15.49 16 11 C -0.70 -10.61 5.95 -39.58 -0.24 -10.84 16 12 C -0.03 -0.40 9.52 -39.58 -0.38 -0.77 16 13 C -0.14 -2.60 9.70 -39.58 -0.38 -2.98 16 14 C 0.03 0.57 5.07 -104.63 -0.53 0.04 16 15 C 0.04 0.94 5.10 -29.03 -0.15 0.79 16 16 C -0.52 -13.95 9.09 -34.44 -0.31 -14.26 16 17 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 20 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 24 C -0.15 -2.66 9.70 -39.59 -0.38 -3.05 16 25 C -0.02 -0.31 9.52 -39.59 -0.38 -0.69 16 26 N -0.29 -2.87 12.13 32.46 0.39 -2.47 16 27 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 28 H 0.11 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.11 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.11 0.93 7.75 -51.93 -0.40 0.53 16 32 H 0.42 3.71 8.65 -34.47 -0.30 3.41 16 33 H 0.13 1.65 7.61 -52.49 -0.40 1.25 16 34 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 36 H 0.04 0.89 8.09 -51.92 -0.42 0.47 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.13 2.26 8.06 -52.48 -0.42 1.83 16 39 H 0.13 1.79 7.62 -52.48 -0.40 1.39 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -36.19 360.07 -7.78 -43.98 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.42 Total: 0.18 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -3.40 Total: -26.79 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 2.19 Total: -42.41 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -1.95 Total: -31.51 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 35.65 SS G_CDS: -0.62 Total: 35.03 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.19 -7.78 -43.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463630464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.684 kcal (2) G-P(sol) polarization free energy of solvation -36.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds