Wall clock time and date at job start Tue Mar 31 2020 20:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28780 * 125.44720 * 2 1 4 4 N 1.29006 * 108.72551 * 180.02562 * 3 2 1 5 5 C 1.33317 * 107.34889 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.54433 * 179.97438 * 5 4 3 7 7 N 1.46506 * 109.47214 * 90.02276 * 6 5 4 8 8 S 1.65597 * 120.00079 * 164.72113 * 7 6 5 9 9 O 1.42100 * 106.40448 * 178.54099 * 8 7 6 10 10 O 1.42103 * 106.40365 * 311.46606 * 8 7 6 11 11 C 1.76197 * 107.21750 * 65.00357 * 8 7 6 12 12 C 1.38239 * 119.99894 * 269.72963 * 11 8 7 13 13 C 1.38239 * 119.99549 * 179.76748 * 12 11 8 14 14 C 1.38233 * 120.00265 * 0.48002 * 13 12 11 15 15 C 1.50699 * 119.99834 * 179.77022 * 14 13 12 16 16 C 1.50702 * 109.47237 * 270.02242 * 15 14 13 17 17 H 1.08004 * 119.99932 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99911 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00489 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99866 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.47188 * 89.99753 * 20 18 16 22 22 H 1.48509 * 109.47092 * 209.99742 * 20 18 16 23 23 H 1.48502 * 109.46871 * 329.99537 * 20 18 16 24 24 C 1.38232 * 119.99907 * 359.79004 * 14 13 12 25 25 C 1.38230 * 120.00363 * 89.99871 * 11 8 7 26 26 N 1.28884 * 125.44772 * 180.34054 * 2 1 3 27 27 H 1.09007 * 109.47113 * 89.97067 * 1 2 3 28 28 H 1.08995 * 109.46774 * 209.97016 * 1 2 3 29 29 H 1.09001 * 109.46786 * 329.97494 * 1 2 3 30 30 H 1.08999 * 109.47652 * 330.02433 * 6 5 4 31 31 H 1.09000 * 109.47217 * 210.02539 * 6 5 4 32 32 H 0.97005 * 119.99811 * 345.00092 * 7 6 5 33 33 H 1.07994 * 119.99903 * 359.97438 * 12 11 8 34 34 H 1.08001 * 119.99711 * 180.24792 * 13 12 11 35 35 H 1.09004 * 109.47324 * 30.02256 * 15 14 13 36 36 H 1.09007 * 109.47179 * 150.02410 * 15 14 13 37 37 H 0.96997 * 120.00344 * 180.02562 * 19 18 16 38 38 H 1.08005 * 119.99765 * 179.97438 * 24 14 13 39 39 H 1.08008 * 119.99761 * 0.02562 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0491 0.0000 4 7 3.4474 0.6779 -0.0005 5 6 3.4620 -0.6552 -0.0015 6 6 4.6825 -1.5392 -0.0029 7 7 5.0786 -1.8271 1.3779 8 16 6.1369 -3.0605 1.6957 9 8 6.3426 -3.0605 3.1017 10 8 5.6610 -4.1920 0.9797 11 6 7.6806 -2.6239 0.9670 12 6 7.9619 -2.9994 -0.3333 13 6 9.1712 -2.6527 -0.9065 14 6 10.1030 -1.9391 -0.1762 15 6 11.4232 -1.5657 -0.7995 16 6 12.4283 -2.6582 -0.5398 17 1 12.1399 -3.5351 0.0210 18 6 13.7161 -2.5378 -1.0171 19 7 14.0675 -1.4699 -1.6994 20 14 14.9621 -3.8917 -0.6945 21 1 14.9110 -4.8845 -1.7976 22 1 16.3238 -3.3039 -0.6203 23 1 14.6420 -4.5630 0.5909 24 6 9.8238 -1.5684 1.1259 25 6 8.6126 -1.9107 1.6974 26 7 2.2125 -1.0499 -0.0062 27 1 -0.3634 0.0005 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 5.4986 -1.0311 -0.5165 31 1 4.4544 -2.4726 -0.5176 32 1 4.7178 -1.2978 2.1063 33 1 7.2357 -3.5607 -0.9024 34 1 9.3894 -2.9426 -1.9237 35 1 11.2946 -1.4384 -1.8744 36 1 11.7800 -0.6326 -0.3632 37 1 14.9734 -1.3853 -2.0355 38 1 10.5521 -1.0113 1.6966 39 1 8.3947 -1.6214 2.7150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463630464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:09 Heat of formation + Delta-G solvation = 51.192214 kcal Electronic energy + Delta-G solvation = -25577.968812 eV Core-core repulsion = 21649.802893 eV Total energy + Delta-G solvation = -3928.165919 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.44594 -40.19415 -38.39626 -37.22429 -36.98683 -35.74275 -35.57054 -33.94040 -33.29123 -31.91552 -29.89704 -29.22496 -27.70979 -25.57415 -24.14286 -23.72893 -23.40720 -22.45107 -20.65305 -19.14069 -18.88532 -18.57381 -18.48957 -18.21286 -17.43509 -16.84009 -16.47603 -15.96460 -15.72916 -15.53554 -15.20319 -15.08815 -14.64465 -14.52528 -14.40367 -14.30839 -13.91938 -13.82053 -13.39187 -13.36569 -13.24366 -13.20547 -13.16606 -12.89297 -12.66360 -12.63695 -12.14855 -12.09747 -12.06391 -11.99553 -11.65719 -11.42760 -11.27041 -10.71633 -10.63896 -9.92393 -9.91199 -8.25486 -6.38064 -0.72035 -0.03323 0.12229 0.44849 0.90526 1.08124 1.39546 1.39809 1.51309 2.03797 2.36132 2.55566 2.68285 2.83918 3.07133 3.16512 3.34732 3.88550 3.93688 4.03001 4.14382 4.20053 4.26162 4.43329 4.49958 4.52716 4.52776 4.61483 4.63801 4.74798 4.85890 4.95798 5.14054 5.14986 5.28545 5.28989 5.37787 5.69025 5.83858 5.90488 5.96298 6.12205 6.74059 7.22528 7.30902 8.84547 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020874 B = 0.002400 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.033957 B =11662.913512 C =12408.710460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.125 5.125 3 N -0.077 5.077 4 N -0.297 5.297 5 C 0.152 3.848 6 C 0.212 3.788 7 N -1.104 6.104 8 S 2.736 3.264 9 O -0.980 6.980 10 O -0.972 6.972 11 C -0.700 4.700 12 C -0.017 4.017 13 C -0.154 4.154 14 C -0.003 4.003 15 C 0.047 3.953 16 C -0.532 4.532 17 H 0.055 0.945 18 C 0.008 3.992 19 N -0.926 5.926 20 Si 0.964 3.036 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.268 1.268 24 C -0.157 4.157 25 C -0.017 4.017 26 N -0.298 5.298 27 H 0.125 0.875 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.427 0.573 33 H 0.165 0.835 34 H 0.132 0.868 35 H 0.014 0.986 36 H 0.011 0.989 37 H 0.267 0.733 38 H 0.127 0.873 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.570 1.930 3.611 29.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.039 5.039 3 N -0.070 5.070 4 N -0.168 5.168 5 C -0.132 4.132 6 C 0.084 3.916 7 N -0.866 5.866 8 S 2.826 3.174 9 O -0.970 6.970 10 O -0.962 6.962 11 C -0.788 4.788 12 C -0.036 4.036 13 C -0.173 4.173 14 C -0.004 4.004 15 C 0.010 3.990 16 C -0.569 4.569 17 H 0.073 0.927 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.789 3.211 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.192 1.192 24 C -0.176 4.176 25 C -0.036 4.036 26 N -0.151 5.151 27 H 0.143 0.857 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.133 0.867 31 H 0.144 0.856 32 H 0.263 0.737 33 H 0.182 0.818 34 H 0.150 0.850 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.076 0.924 38 H 0.145 0.855 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -29.965 1.720 3.822 30.257 hybrid contribution 1.759 0.030 -0.174 1.768 sum -28.206 1.750 3.648 28.495 Atomic orbital electron populations 1.23107 0.65786 1.08995 1.08260 1.50658 1.12413 0.99947 1.40926 1.78967 0.96447 1.14978 1.16612 1.75891 1.10803 1.11710 1.18427 1.25505 0.93471 0.90442 1.03734 1.19634 0.90208 0.98636 0.83162 1.55291 1.61969 1.55116 1.14223 1.00537 0.72356 0.72300 0.72189 1.93555 1.86267 1.86466 1.30730 1.93554 1.79793 1.48010 1.74820 1.30700 1.23219 1.17997 1.06878 1.21114 0.96666 0.93367 0.92464 1.21323 0.94216 1.00465 1.01265 1.20830 0.94814 0.90540 0.94188 1.18271 0.89126 0.96248 0.95325 1.21295 0.95678 1.04751 1.35219 0.92703 1.25879 1.00414 0.98212 0.94616 1.70057 1.19981 1.29296 1.37207 0.85455 0.77840 0.78890 0.78944 1.19597 1.20464 1.19214 1.21291 0.97962 1.03101 0.95248 1.21013 0.91831 0.91629 0.99173 1.74736 1.03229 1.15930 1.21237 0.85696 0.85170 0.84741 0.86689 0.85649 0.73716 0.81788 0.85021 0.96750 0.97033 0.92428 0.85516 0.82801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.09 11.63 127.77 1.49 1.57 16 2 N -0.12 -1.74 4.40 -206.72 -0.91 -2.65 16 3 N -0.08 -1.50 13.25 37.02 0.49 -1.01 16 4 N -0.30 -6.76 12.50 -51.26 -0.64 -7.40 16 5 C 0.15 2.98 7.76 138.55 1.08 4.06 16 6 C 0.21 3.55 6.85 85.63 0.59 4.13 16 7 N -1.10 -19.65 5.99 -190.78 -1.14 -20.79 16 8 S 2.74 64.96 5.74 -56.49 -0.32 64.63 16 9 O -0.98 -28.23 17.28 -128.00 -2.21 -30.45 16 10 O -0.97 -26.49 16.74 -128.00 -2.14 -28.63 16 11 C -0.70 -19.60 5.95 22.27 0.13 -19.47 16 12 C -0.02 -0.49 9.52 22.27 0.21 -0.28 16 13 C -0.15 -5.50 9.70 22.27 0.22 -5.28 16 14 C 0.00 -0.14 5.07 -19.87 -0.10 -0.24 16 15 C 0.05 2.42 5.10 29.10 0.15 2.56 16 16 C -0.53 -29.55 9.09 25.60 0.23 -29.31 16 17 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 18 C 0.01 0.43 5.46 84.65 0.46 0.89 16 19 N -0.93 -54.47 13.29 21.45 0.28 -54.18 16 20 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 C -0.16 -5.83 9.70 22.27 0.22 -5.62 16 25 C -0.02 -0.53 9.52 22.27 0.21 -0.32 16 26 N -0.30 -5.30 12.13 -51.20 -0.62 -5.92 16 27 H 0.12 -0.32 8.14 -2.38 -0.02 -0.34 16 28 H 0.13 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.13 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.13 1.75 7.75 -2.39 -0.02 1.73 16 32 H 0.43 6.59 8.65 -96.74 -0.84 5.75 16 33 H 0.16 3.60 7.61 -2.91 -0.02 3.58 16 34 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 35 H 0.01 0.77 8.09 -2.38 -0.02 0.75 16 36 H 0.01 0.62 8.09 -2.38 -0.02 0.60 16 37 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 38 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 39 H 0.15 3.93 7.62 -2.91 -0.02 3.91 16 Total: -1.00 -78.81 360.07 -0.05 -78.85 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.27 Total: 9.14 kcal Atomic # 6 Polarization: -52.18 SS G_CDS: 4.88 Total: -47.30 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -2.54 Total: -91.96 kcal Atomic # 8 Polarization: -54.72 SS G_CDS: -4.36 Total: -59.08 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 64.96 SS G_CDS: -0.32 Total: 64.63 kcal Total: -78.81 -0.05 -78.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463630464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.047 kcal (2) G-P(sol) polarization free energy of solvation -78.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds