Wall clock time and date at job start Tue Mar 31 2020 20:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47230 * 2 1 4 4 C 1.36912 * 119.99302 * 264.82370 * 3 2 1 5 5 H 1.08002 * 119.99689 * 146.38598 * 4 3 2 6 6 C 1.39014 * 120.00314 * 326.38110 * 4 3 2 7 7 N 1.31389 * 119.99903 * 156.45611 * 6 4 3 8 8 Si 1.86798 * 119.99936 * 336.45161 * 6 4 3 9 9 H 1.48500 * 109.46870 * 95.31541 * 8 6 4 10 10 H 1.48501 * 109.47415 * 215.31062 * 8 6 4 11 11 H 1.48498 * 109.47449 * 335.31424 * 8 6 4 12 12 C 1.34773 * 120.00206 * 84.82112 * 3 2 1 13 13 O 1.21632 * 120.00161 * 175.21435 * 12 3 2 14 14 C 1.47347 * 119.99981 * 355.21929 * 12 3 2 15 15 N 1.32081 * 126.45705 * 1.91042 * 14 12 3 16 16 N 1.28458 * 110.20438 * 179.97438 * 15 14 12 17 17 C 1.40160 * 124.92735 * 180.02562 * 16 15 14 18 18 C 1.38838 * 120.05553 * 359.97438 * 17 16 15 19 19 C 1.38095 * 119.98121 * 179.97438 * 18 17 16 20 20 C 1.38516 * 120.09018 * 359.97438 * 19 18 17 21 21 F 1.35106 * 119.94517 * 180.02562 * 20 19 18 22 22 C 1.38457 * 120.11268 * 0.02562 * 20 19 18 23 23 C 1.38307 * 120.01768 * 359.74937 * 22 20 19 24 24 F 1.35105 * 120.04746 * 180.24739 * 23 22 20 25 25 C 1.36099 * 110.14593 * 0.02562 * 16 15 14 26 26 C 1.35752 * 107.08243 * 359.76129 * 25 16 15 27 27 O 1.36082 * 127.26527 * 180.22604 * 26 25 16 28 28 H 1.09002 * 109.47367 * 65.86814 * 1 2 3 29 29 H 1.09002 * 109.47390 * 185.86754 * 1 2 3 30 30 H 1.08999 * 109.47258 * 305.86351 * 1 2 3 31 31 H 1.08994 * 109.47196 * 239.99306 * 2 1 3 32 32 H 1.09009 * 109.47030 * 119.99851 * 2 1 3 33 33 H 0.96999 * 119.99497 * 179.97438 * 7 6 4 34 34 H 1.08001 * 120.00889 * 359.95507 * 18 17 16 35 35 H 1.07997 * 119.95234 * 179.97438 * 19 18 17 36 36 H 1.07996 * 119.99218 * 179.97438 * 22 20 19 37 37 H 1.08001 * 126.46206 * 179.97438 * 25 16 15 38 38 H 0.96697 * 113.99862 * 270.16316 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3473 1.9908 -1.1809 5 1 2.1827 3.0509 -1.3056 6 6 2.8934 1.2454 -2.2195 7 7 2.7870 1.6689 -3.4587 8 14 3.7786 -0.3582 -1.8532 9 1 2.8349 -1.4930 -2.0165 10 1 4.9165 -0.5216 -2.7934 11 1 4.2883 -0.3350 -0.4586 12 6 2.1436 2.0517 1.1624 13 8 2.6304 3.1663 1.1721 14 6 1.6911 1.4344 2.4214 15 7 1.1799 0.2248 2.5632 16 7 0.8930 0.0060 3.7960 17 6 0.3348 -1.1802 4.2918 18 6 0.0505 -2.2291 3.4278 19 6 -0.4989 -3.3974 3.9179 20 6 -0.7665 -3.5247 5.2710 21 9 -1.3037 -4.6691 5.7475 22 6 -0.4845 -2.4810 6.1361 23 6 0.0701 -1.3107 5.6508 24 9 0.3502 -0.2938 6.4951 25 6 1.2097 1.0932 4.5510 26 6 1.7269 2.0254 3.7106 27 8 2.1816 3.2662 4.0357 28 1 -0.3634 0.4201 -0.9379 29 1 -0.3634 -1.0223 0.1051 30 1 -0.3634 0.6021 0.8328 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.1684 1.1489 -4.1833 34 1 0.2588 -2.1313 2.3725 35 1 -0.7203 -4.2128 3.2454 36 1 -0.6944 -2.5822 7.1906 37 1 1.0780 1.1940 5.6182 38 1 1.5038 3.9549 4.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464423599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:01 Heat of formation + Delta-G solvation = -10.727720 kcal Electronic energy + Delta-G solvation = -29356.358738 eV Core-core repulsion = 24839.374632 eV Total energy + Delta-G solvation = -4516.984106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.72105 -49.45914 -42.75231 -39.36289 -38.45122 -37.01732 -35.11514 -33.39622 -32.29308 -31.56098 -30.09677 -29.63448 -29.02048 -25.79901 -23.97819 -23.71227 -22.92345 -21.83068 -21.57709 -19.37078 -18.76276 -18.41292 -17.66177 -17.02609 -16.95628 -16.69774 -16.28407 -16.25142 -15.98421 -15.75316 -15.55982 -15.14264 -14.79405 -14.21035 -14.01465 -13.94670 -13.72004 -13.56526 -13.31724 -12.75740 -12.67297 -12.50894 -12.38493 -12.07357 -11.94963 -11.51875 -11.31726 -11.00970 -10.70814 -10.22236 -10.09678 -9.97309 -9.73458 -9.62523 -9.17881 -8.96600 -8.67412 -8.25594 -7.81593 -6.49061 -3.95828 0.08640 0.39483 1.85373 2.09083 2.19161 2.89816 3.02309 3.21386 3.22511 3.27772 3.64385 3.88277 4.08233 4.14010 4.17130 4.25976 4.44247 4.58658 4.71678 4.89848 4.98820 5.14807 5.23301 5.32855 5.39209 5.49274 5.56812 5.71967 5.77977 6.03325 6.05425 6.11344 6.21755 6.43098 6.55333 6.70530 6.93008 7.46994 7.86078 7.91531 8.20407 8.48019 8.89592 9.24473 9.74418 10.61892 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.004059 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.505778 B = 6896.448119 C = 8468.723610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.084 3.916 3 N -0.437 5.437 4 C -0.309 4.309 5 H 0.111 0.889 6 C 0.062 3.938 7 N -0.851 5.851 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.263 1.263 12 C 0.523 3.477 13 O -0.551 6.551 14 C 0.022 3.978 15 N -0.260 5.260 16 N -0.248 5.248 17 C 0.120 3.880 18 C -0.060 4.060 19 C -0.134 4.134 20 C 0.120 3.880 21 F -0.127 7.127 22 C -0.165 4.165 23 C 0.115 3.885 24 F -0.119 7.119 25 C -0.057 4.057 26 C 0.050 3.950 27 O -0.450 6.450 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.276 0.724 34 H 0.165 0.835 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.198 0.802 38 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.542 -12.215 18.033 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.040 4.040 3 N -0.157 5.157 4 C -0.436 4.436 5 H 0.129 0.871 6 C -0.145 4.145 7 N -0.487 5.487 8 Si 0.705 3.295 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.187 1.187 12 C 0.310 3.690 13 O -0.431 6.431 14 C -0.141 4.141 15 N -0.093 5.093 16 N -0.030 5.030 17 C 0.026 3.974 18 C -0.080 4.080 19 C -0.154 4.154 20 C 0.100 3.900 21 F -0.106 7.106 22 C -0.185 4.185 23 C 0.093 3.907 24 F -0.097 7.097 25 C -0.195 4.195 26 C -0.005 4.005 27 O -0.255 6.255 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.182 0.818 35 H 0.173 0.827 36 H 0.177 0.823 37 H 0.215 0.785 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -9.002 -12.880 17.372 23.424 hybrid contribution 0.221 0.031 0.734 0.767 sum -8.781 -12.849 18.106 23.875 Atomic orbital electron populations 1.21944 0.96031 1.00477 1.02043 1.22022 0.95101 0.85133 1.01752 1.43704 1.54797 1.11744 1.05471 1.19145 1.40828 0.96990 0.86672 0.87140 1.25339 0.96084 0.98443 0.94627 1.69754 1.40517 1.39724 0.98676 0.86972 0.79940 0.83061 0.79559 1.19993 1.21284 1.18688 1.16679 0.84316 0.87349 0.80645 1.90701 1.47855 1.19731 1.84809 1.23357 1.02288 0.91388 0.97046 1.74084 1.18361 1.18493 0.98340 1.42147 1.44881 1.10473 1.05467 1.17606 1.02138 0.86523 0.91134 1.20832 0.96086 0.89757 1.01334 1.21166 1.01042 0.99282 0.93872 1.17303 0.98018 0.82743 0.91949 1.91559 1.83256 1.46985 1.88752 1.20846 1.03863 0.91611 1.02165 1.16782 1.02482 0.86492 0.84952 1.91443 1.91222 1.56895 1.70168 1.23535 1.07069 0.88733 1.00205 1.18199 1.03242 0.89046 0.89988 1.84888 1.37515 1.13659 1.89466 0.92265 0.93105 0.92877 0.91449 0.90001 0.91331 0.81769 0.82685 0.82300 0.78524 0.75828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.54 37.15 0.35 -2.27 16 2 C 0.08 1.76 4.33 -4.04 -0.02 1.74 16 3 N -0.44 -11.03 2.25 -116.06 -0.26 -11.29 16 4 C -0.31 -8.79 9.41 -15.00 -0.14 -8.93 16 5 H 0.11 3.48 7.88 -52.49 -0.41 3.07 16 6 C 0.06 1.72 5.28 -17.45 -0.09 1.62 16 7 N -0.85 -24.17 13.96 55.50 0.77 -23.40 16 8 Si 0.88 20.72 24.95 -169.99 -4.24 16.48 16 9 H -0.27 -5.92 6.64 56.52 0.38 -5.54 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.52 13.14 7.58 -12.56 -0.10 13.05 16 13 O -0.55 -15.57 16.38 2.99 0.05 -15.52 16 14 C 0.02 0.46 6.49 -82.67 -0.54 -0.07 16 15 N -0.26 -4.57 6.26 33.45 0.21 -4.36 16 16 N -0.25 -3.65 3.52 -10.35 -0.04 -3.68 16 17 C 0.12 1.36 6.67 -83.52 -0.56 0.81 16 18 C -0.06 -0.58 9.59 -39.41 -0.38 -0.95 16 19 C -0.13 -0.98 10.02 -39.53 -0.40 -1.37 16 20 C 0.12 0.90 7.30 -39.40 -0.29 0.62 16 21 F -0.13 -1.00 17.27 2.25 0.04 -0.96 16 22 C -0.16 -1.21 10.00 -39.48 -0.39 -1.61 16 23 C 0.12 1.09 7.22 -39.25 -0.28 0.81 16 24 F -0.12 -1.15 13.82 2.25 0.03 -1.12 16 25 C -0.06 -0.83 10.55 -16.55 -0.17 -1.00 16 26 C 0.05 0.90 7.35 -39.09 -0.29 0.62 16 27 O -0.45 -7.70 13.20 -22.26 -0.29 -8.00 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.95 6.76 -51.93 -0.35 0.60 16 31 H 0.07 1.48 3.09 -51.93 -0.16 1.32 16 32 H 0.08 1.62 5.65 -51.92 -0.29 1.32 16 33 H 0.28 7.22 8.31 -40.82 -0.34 6.89 16 34 H 0.16 1.62 7.64 -52.49 -0.40 1.21 16 35 H 0.16 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.20 2.29 5.61 -52.49 -0.29 2.00 16 38 H 0.39 4.80 9.07 45.56 0.41 5.21 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -33.84 330.18 -4.39 -38.23 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -2.35 Total: 5.59 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -3.29 Total: 3.05 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.69 Total: -42.73 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.24 Total: -23.52 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.07 Total: -2.09 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.24 Total: 16.48 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.84 -4.39 -38.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464423599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.503 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds