Wall clock time and date at job start Tue Mar 31 2020 20:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47443 * 2 1 4 4 C 1.50701 * 109.46698 * 240.00195 * 2 1 3 5 5 H 1.08010 * 119.99736 * 239.99969 * 4 2 1 6 6 C 1.37868 * 120.00345 * 60.00298 * 4 2 1 7 7 N 1.31522 * 120.00031 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00396 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46633 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47060 * 120.00225 * 8 6 4 11 11 H 1.48507 * 109.47089 * 240.00105 * 8 6 4 12 12 N 1.46500 * 109.47181 * 120.00387 * 2 1 3 13 13 C 1.34773 * 120.00134 * 275.00011 * 12 2 1 14 14 O 1.21603 * 120.00024 * 359.97438 * 13 12 2 15 15 C 1.47454 * 120.00340 * 179.97438 * 13 12 2 16 16 N 1.32030 * 126.44790 * 0.02562 * 15 13 12 17 17 N 1.28458 * 110.21617 * 179.97438 * 16 15 13 18 18 C 1.40184 * 124.93206 * 179.97438 * 17 16 15 19 19 C 1.38826 * 120.05817 * 0.02562 * 18 17 16 20 20 C 1.38088 * 119.98355 * 179.97438 * 19 18 17 21 21 C 1.38528 * 120.09166 * 359.97438 * 20 19 18 22 22 F 1.35099 * 119.94827 * 180.02562 * 21 20 19 23 23 C 1.38450 * 120.10466 * 0.03896 * 21 20 19 24 24 C 1.38315 * 120.01956 * 359.70814 * 23 21 20 25 25 F 1.35107 * 120.04458 * 180.27916 * 24 23 21 26 26 C 1.36084 * 110.13289 * 359.97438 * 17 16 15 27 27 C 1.35782 * 107.06828 * 0.23304 * 26 17 16 28 28 O 1.36075 * 127.25640 * 179.73131 * 27 26 17 29 29 H 1.08997 * 109.47159 * 59.99442 * 1 2 3 30 30 H 1.08999 * 109.47443 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46746 * 300.00092 * 1 2 3 32 32 H 0.96999 * 120.00004 * 180.02562 * 7 6 4 33 33 H 0.97000 * 120.00051 * 94.99024 * 12 2 1 34 34 H 1.08006 * 120.00784 * 359.96235 * 19 18 17 35 35 H 1.08004 * 119.96067 * 180.02562 * 20 19 18 36 36 H 1.07994 * 119.99080 * 179.97438 * 23 21 20 37 37 H 1.08002 * 126.46193 * 179.97438 * 26 17 16 38 38 H 0.96699 * 113.99537 * 90.03110 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1482 -2.2856 -3.6039 10 1 1.1676 -1.5863 -4.8166 11 1 3.1472 -0.1857 -4.8162 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0185 2.3571 14 8 1.8583 1.1615 2.4117 15 6 2.6381 -0.7137 3.5612 16 7 2.9867 -1.9843 3.6459 17 7 3.3683 -2.2612 4.8408 18 6 3.8040 -3.5218 5.2725 19 6 3.8461 -4.5856 4.3816 20 6 4.2760 -5.8265 4.8083 21 6 4.6662 -6.0116 6.1246 22 9 5.0868 -7.2268 6.5389 23 6 4.6255 -4.9533 7.0163 24 6 4.2005 -3.7072 6.5924 25 9 4.1660 -2.6727 7.4607 26 6 3.2882 -1.1532 5.6267 27 6 2.8211 -0.1445 4.8470 28 8 2.5806 1.1417 5.2204 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.7081 1.1610 -3.4844 33 1 2.2489 -1.6319 1.1525 34 1 3.5424 -4.4428 3.3550 35 1 4.3090 -6.6538 4.1148 36 1 4.9296 -5.0997 8.0421 37 1 3.5436 -1.0893 6.6741 38 1 3.3397 1.7310 5.1127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465018646.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:41 Heat of formation + Delta-G solvation = -68.326807 kcal Electronic energy + Delta-G solvation = -28035.885042 eV Core-core repulsion = 23516.403252 eV Total energy + Delta-G solvation = -4519.481790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.49360 -50.10963 -44.10558 -40.54185 -39.91367 -38.30781 -36.71971 -34.70142 -34.15832 -32.33605 -31.49833 -30.94384 -29.81172 -27.35843 -25.99253 -24.61415 -23.73414 -22.77780 -22.42865 -21.11923 -20.00820 -19.45134 -19.06814 -18.62339 -18.06294 -17.73974 -17.62924 -17.18304 -16.95948 -16.88428 -16.48709 -16.13410 -16.08285 -15.66985 -15.58300 -15.27778 -15.10572 -14.77836 -14.43283 -14.31819 -13.74915 -13.67454 -13.32128 -13.01732 -12.92190 -12.88778 -12.76139 -12.56202 -12.29426 -12.12421 -11.66996 -11.24577 -11.12468 -11.03206 -10.61305 -10.34229 -10.28194 -9.85770 -9.35803 -8.17620 -6.35377 -0.78825 -0.26118 0.46541 0.81114 0.93811 1.45744 1.46168 1.58936 2.11339 2.25489 2.30145 2.46483 2.48552 2.82328 3.04522 3.12842 3.33130 3.40277 3.63627 3.75454 3.87583 3.99813 4.25135 4.34610 4.55544 4.68402 4.71524 4.78930 4.81520 4.90422 4.92473 5.06622 5.33955 5.39277 5.55899 5.60964 5.65926 5.86093 6.06691 6.41567 6.69513 6.70175 6.88506 7.26548 7.42330 8.89295 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012960 B = 0.002936 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.043681 B = 9536.038020 C =11440.597263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.271 3.729 3 H 0.005 0.995 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.975 3.025 9 H -0.260 1.260 10 H -0.277 1.277 11 H -0.282 1.282 12 N -0.688 5.688 13 C 0.584 3.416 14 O -0.574 6.574 15 C -0.037 4.037 16 N -0.247 5.247 17 N -0.224 5.224 18 C 0.074 3.926 19 C -0.055 4.055 20 C -0.124 4.124 21 C 0.136 3.864 22 F -0.124 7.124 23 C -0.155 4.155 24 C 0.126 3.874 25 F -0.118 7.118 26 C -0.034 4.034 27 C 0.039 3.961 28 O -0.463 6.463 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.011 0.989 32 H 0.267 0.733 33 H 0.406 0.594 34 H 0.162 0.838 35 H 0.182 0.818 36 H 0.187 0.813 37 H 0.232 0.768 38 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.467 -16.489 21.358 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.023 0.977 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.800 3.200 9 H -0.184 1.184 10 H -0.203 1.203 11 H -0.208 1.208 12 N -0.336 5.336 13 C 0.369 3.631 14 O -0.452 6.452 15 C -0.198 4.198 16 N -0.083 5.083 17 N -0.007 5.007 18 C -0.018 4.018 19 C -0.075 4.075 20 C -0.144 4.144 21 C 0.116 3.884 22 F -0.102 7.102 23 C -0.174 4.174 24 C 0.104 3.896 25 F -0.097 7.097 26 C -0.174 4.174 27 C -0.016 4.016 28 O -0.272 6.272 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.241 0.759 34 H 0.180 0.820 35 H 0.199 0.801 36 H 0.204 0.796 37 H 0.248 0.752 38 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 9.719 -16.708 20.803 28.397 hybrid contribution 0.464 0.839 -0.402 1.040 sum 10.183 -15.869 20.401 27.780 Atomic orbital electron populations 1.21918 0.98093 0.99552 0.99794 1.18469 0.91284 0.92126 0.81346 0.97707 1.21531 1.32756 1.13625 0.90645 0.90932 1.25811 0.94790 0.95579 1.02294 1.70059 1.36858 1.23891 1.24675 0.85248 0.78124 0.78500 0.78162 1.18367 1.20280 1.20831 1.46197 1.63978 1.14244 1.09206 1.17189 0.77997 0.85739 0.82215 1.90751 1.52897 1.16563 1.85020 1.22581 1.09081 0.91753 0.96386 1.73574 1.15836 1.15794 1.03063 1.42279 1.44495 1.08004 1.05945 1.17989 1.06839 0.83128 0.93807 1.20899 0.96406 0.89672 1.00496 1.21399 0.99438 0.98380 0.95139 1.17419 0.97715 0.80592 0.92718 1.91587 1.87084 1.40879 1.90652 1.21085 1.03854 0.89033 1.03476 1.16827 1.02741 0.85813 0.84265 1.91433 1.94001 1.55895 1.68350 1.23966 1.06840 0.85462 1.01120 1.18345 1.05338 0.88011 0.89912 1.84836 1.41779 1.14955 1.85586 0.90947 0.94132 0.96949 0.92424 0.75917 0.82021 0.80092 0.79566 0.75153 0.73604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.13 9.26 71.98 0.67 -6.46 16 2 C 0.27 14.65 2.56 44.25 0.11 14.77 16 3 H 0.01 0.32 7.58 -2.39 -0.02 0.30 16 4 C -0.55 -29.71 8.73 25.60 0.22 -29.49 16 5 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -52.98 11.32 21.45 0.24 -52.74 16 8 Si 0.98 42.21 29.54 68.60 2.03 44.23 16 9 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 N -0.69 -31.70 5.07 -449.35 -2.28 -33.97 16 13 C 0.58 26.75 7.78 86.67 0.67 27.43 16 14 O -0.57 -30.31 16.19 -1.88 -0.03 -30.34 16 15 C -0.04 -1.37 7.13 42.43 0.30 -1.07 16 16 N -0.25 -7.71 10.84 -48.06 -0.52 -8.23 16 17 N -0.22 -5.60 3.52 -186.64 -0.66 -6.25 16 18 C 0.07 1.33 6.67 38.14 0.25 1.59 16 19 C -0.06 -0.80 9.59 22.37 0.21 -0.58 16 20 C -0.12 -1.15 10.02 22.30 0.22 -0.92 16 21 C 0.14 1.27 7.30 22.39 0.16 1.43 16 22 F -0.12 -1.27 17.26 44.97 0.78 -0.50 16 23 C -0.15 -1.36 10.00 22.34 0.22 -1.14 16 24 C 0.13 1.70 7.22 22.48 0.16 1.86 16 25 F -0.12 -1.64 13.82 44.97 0.62 -1.02 16 26 C -0.03 -0.83 10.55 83.46 0.88 0.05 16 27 C 0.04 1.25 7.35 22.58 0.17 1.41 16 28 O -0.46 -14.19 13.20 -92.24 -1.22 -15.41 16 29 H 0.07 4.11 6.07 -2.39 -0.01 4.10 16 30 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.41 16.59 8.26 -92.71 -0.77 15.83 16 34 H 0.16 2.50 7.64 -2.91 -0.02 2.48 16 35 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 36 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 37 H 0.23 4.04 5.61 -2.91 -0.02 4.03 16 38 H 0.41 8.76 9.07 -74.06 -0.67 8.09 16 Total: -1.00 -73.66 344.20 3.42 -70.25 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -0.27 Total: 23.83 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 4.72 Total: 10.15 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -3.21 Total: -101.19 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -1.25 Total: -45.75 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 1.40 Total: -1.51 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -73.66 3.42 -70.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465018646.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.920 kcal (2) G-P(sol) polarization free energy of solvation -73.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds