Wall clock time and date at job start Tue Mar 31 2020 20:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34142 * 118.70305 * 2 1 4 4 O 1.21226 * 119.35828 * 359.46994 * 3 2 1 5 5 C 1.50586 * 121.27661 * 179.45262 * 3 2 1 6 6 C 1.53268 * 109.14415 * 29.14721 * 5 3 2 7 7 C 1.53243 * 108.54998 * 304.34250 * 6 5 3 8 8 H 1.08997 * 109.57354 * 295.68367 * 7 6 5 9 9 N 1.46509 * 109.52195 * 175.53101 * 7 6 5 10 10 C 1.34773 * 120.00057 * 155.30986 * 9 7 6 11 11 O 1.21588 * 120.00109 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99770 * 179.97438 * 10 9 7 13 13 C 1.46500 * 119.99995 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.46596 * 35.00583 * 13 12 10 15 15 C 1.50696 * 109.47188 * 155.00083 * 13 12 10 16 16 H 1.08003 * 120.00087 * 0.02562 * 15 13 12 17 17 C 1.37880 * 120.00316 * 179.97438 * 15 13 12 18 18 N 1.31515 * 119.99571 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00268 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46754 * 90.00475 * 19 17 15 21 21 H 1.48498 * 109.47278 * 210.00306 * 19 17 15 22 22 H 1.48498 * 109.47109 * 330.00735 * 19 17 15 23 23 C 1.52997 * 109.47473 * 275.00486 * 13 12 10 24 24 F 1.39905 * 109.47157 * 59.99740 * 23 13 12 25 25 F 1.39900 * 109.47010 * 300.00131 * 23 13 12 26 26 F 1.39897 * 109.47422 * 179.97438 * 23 13 12 27 27 C 1.34140 * 118.70410 * 180.02562 * 2 1 3 28 28 O 1.21226 * 119.36415 * 0.52835 * 27 2 1 29 29 H 1.08998 * 109.47457 * 269.98059 * 1 2 3 30 30 H 1.09000 * 109.47220 * 29.98338 * 1 2 3 31 31 H 1.09008 * 109.47115 * 149.98209 * 1 2 3 32 32 H 1.09004 * 109.52449 * 149.02165 * 5 3 2 33 33 H 1.08996 * 109.52606 * 269.14494 * 5 3 2 34 34 H 1.08991 * 109.61921 * 184.62858 * 6 5 3 35 35 H 1.09004 * 109.63635 * 64.06277 * 6 5 3 36 36 H 0.97001 * 119.99648 * 335.32008 * 9 7 6 37 37 H 0.96995 * 120.00034 * 0.02562 * 12 10 9 38 38 H 0.97003 * 119.99476 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1092 1.1766 0.0000 4 8 1.4680 2.2053 -0.0098 5 6 3.6135 1.2442 0.0123 6 6 4.1783 0.0003 -0.6825 7 6 3.6136 -1.2441 0.0109 8 1 3.9689 -1.2812 1.0407 9 7 4.0550 -2.4450 -0.7028 10 6 4.1266 -3.6252 -0.0559 11 8 3.8244 -3.6934 1.1199 12 7 4.5322 -4.7301 -0.7126 13 6 4.6096 -6.0131 -0.0097 14 1 3.8036 -6.0758 0.7215 15 6 4.4757 -7.1387 -1.0026 16 1 4.3465 -6.9203 -2.0524 17 6 4.5194 -8.4476 -0.5711 18 7 4.6773 -8.7135 0.7071 19 14 4.3542 -9.8429 -1.8020 20 1 5.6997 -10.2237 -2.3020 21 1 3.7220 -11.0132 -1.1418 22 1 3.5098 -9.4010 -2.9408 23 6 5.9573 -6.1220 0.7063 24 9 6.0815 -5.0770 1.6281 25 9 6.9917 -6.0414 -0.2322 26 9 6.0309 -7.3470 1.3780 27 6 2.1093 -1.1766 -0.0005 28 8 1.4681 -2.2053 -0.0107 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3634 0.8901 -0.5136 31 1 -0.3634 -0.8899 -0.5141 32 1 3.9424 2.1381 -0.5179 33 1 3.9682 1.2806 1.0423 34 1 5.2655 0.0003 -0.6060 35 1 3.8825 0.0006 -1.7316 36 1 4.2959 -2.3907 -1.6408 37 1 4.7730 -4.6757 -1.6507 38 1 4.7076 -9.6343 1.0108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477101125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:55 Heat of formation + Delta-G solvation = -222.543817 kcal Electronic energy + Delta-G solvation = -30671.881826 eV Core-core repulsion = 25714.943460 eV Total energy + Delta-G solvation = -4956.938366 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.33064 -45.98446 -45.59563 -41.87559 -39.61677 -38.68697 -36.19737 -35.29006 -34.52390 -33.06219 -32.38010 -28.85156 -27.87570 -27.14924 -24.55099 -23.54353 -23.28948 -21.70676 -20.33118 -19.05422 -18.30023 -17.64047 -17.46968 -16.99216 -16.80617 -16.71297 -16.57770 -15.96964 -15.32920 -15.19888 -14.82396 -14.75533 -14.58435 -14.08267 -13.84541 -13.31720 -13.30648 -13.03036 -12.90950 -12.71170 -12.62184 -12.49095 -12.38645 -12.28405 -12.22659 -11.96310 -11.80113 -11.53566 -11.15693 -10.88401 -10.84787 -10.54130 -10.44366 -10.38791 -9.87771 -9.66561 -9.62070 -9.04290 -8.71746 -8.22388 -6.22619 -4.46382 1.36283 2.27548 2.51106 3.03787 3.19481 3.25892 3.28835 3.54878 3.82826 4.14386 4.20219 4.28808 4.35921 4.57990 4.69523 4.76343 4.94516 5.04676 5.10036 5.19434 5.23844 5.24662 5.43249 5.51364 5.58445 5.85044 5.89563 6.22069 6.39103 6.78049 6.81359 7.16791 7.23539 7.32140 7.59168 7.63640 7.65585 8.48669 8.58646 9.10508 9.23073 10.68991 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.021005 B = 0.003212 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.681582 B = 8716.423394 C = 9344.454993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.569 5.569 3 C 0.521 3.479 4 O -0.509 6.509 5 C -0.137 4.137 6 C -0.131 4.131 7 C 0.154 3.846 8 H 0.132 0.868 9 N -0.736 5.736 10 C 0.706 3.294 11 O -0.572 6.572 12 N -0.722 5.722 13 C 0.263 3.737 14 H 0.086 0.914 15 C -0.551 4.551 16 H 0.077 0.923 17 C 0.065 3.935 18 N -0.839 5.839 19 Si 0.916 3.084 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.270 1.270 23 C 0.416 3.584 24 F -0.217 7.217 25 F -0.210 7.210 26 F -0.137 7.137 27 C 0.496 3.504 28 O -0.463 6.463 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.399 0.601 37 H 0.395 0.605 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 17.158 -4.547 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.314 5.314 3 C 0.311 3.689 4 O -0.382 6.382 5 C -0.177 4.177 6 C -0.169 4.169 7 C 0.043 3.957 8 H 0.149 0.851 9 N -0.393 5.393 10 C 0.406 3.594 11 O -0.448 6.448 12 N -0.374 5.374 13 C 0.157 3.843 14 H 0.104 0.896 15 C -0.588 4.588 16 H 0.095 0.905 17 C -0.144 4.144 18 N -0.473 5.473 19 Si 0.742 3.258 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.195 1.195 23 C 0.359 3.641 24 F -0.199 7.199 25 F -0.192 7.192 26 F -0.118 7.118 27 C 0.282 3.718 28 O -0.330 6.330 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.233 0.767 37 H 0.228 0.772 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.149 16.804 -3.264 17.156 hybrid contribution 0.330 -0.745 -1.256 1.497 sum -0.819 16.059 -4.520 16.703 Atomic orbital electron populations 1.21916 0.77781 1.04571 1.03716 1.46637 1.10073 1.07755 1.66942 1.20994 0.91438 0.82484 0.73948 1.90733 1.68790 1.33128 1.45577 1.21896 0.89743 1.00835 1.05250 1.22043 1.03409 0.90949 1.00502 1.20694 0.88249 0.85798 1.00965 0.85079 1.44773 1.73603 1.06743 1.14149 1.15947 0.78119 0.80128 0.85227 1.90930 1.55002 1.84428 1.14441 1.45200 1.70628 1.07588 1.14000 1.19627 0.89789 0.80336 0.94598 0.89611 1.20868 1.55048 0.89120 0.93803 0.90489 1.25076 0.94022 0.99287 0.96006 1.70406 1.42990 1.20366 1.13492 0.86208 0.78474 0.80609 0.80505 1.20237 1.20798 1.19512 1.23189 0.89658 0.73867 0.77336 1.93067 1.96882 1.60507 1.69451 1.92982 1.63461 1.96222 1.66555 1.93404 1.96289 1.41081 1.81034 1.21834 0.92161 0.82598 0.75183 1.90806 1.67846 1.32737 1.41644 0.91199 0.89457 0.89307 0.86247 0.86580 0.87617 0.89741 0.76655 0.77209 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.64 10.00 59.85 0.60 1.24 16 2 N -0.57 -6.34 2.93 -123.17 -0.36 -6.71 16 3 C 0.52 5.05 7.48 -11.32 -0.08 4.97 16 4 O -0.51 -6.31 16.44 5.60 0.09 -6.22 16 5 C -0.14 -0.76 6.07 -27.80 -0.17 -0.93 16 6 C -0.13 -0.75 5.56 -26.47 -0.15 -0.90 16 7 C 0.15 1.69 2.69 -69.01 -0.19 1.50 16 8 H 0.13 1.56 7.58 -51.93 -0.39 1.16 16 9 N -0.74 -9.71 4.89 -59.74 -0.29 -10.00 16 10 C 0.71 13.63 7.52 -86.92 -0.65 12.98 16 11 O -0.57 -13.48 14.47 5.29 0.08 -13.40 16 12 N -0.72 -14.47 4.99 -59.82 -0.30 -14.77 16 13 C 0.26 6.52 2.21 -69.09 -0.15 6.36 16 14 H 0.09 2.43 7.58 -51.93 -0.39 2.04 16 15 C -0.55 -14.01 8.47 -34.44 -0.29 -14.31 16 16 H 0.08 1.84 7.74 -52.48 -0.41 1.44 16 17 C 0.06 1.69 5.20 -17.82 -0.09 1.59 16 18 N -0.84 -23.03 9.50 55.43 0.53 -22.50 16 19 Si 0.92 20.07 29.54 -169.99 -5.02 15.05 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 C 0.42 10.55 2.81 37.16 0.10 10.66 16 24 F -0.22 -5.43 15.68 2.25 0.04 -5.40 16 25 F -0.21 -5.07 16.94 2.25 0.04 -5.03 16 26 F -0.14 -3.78 12.91 2.25 0.03 -3.75 16 27 C 0.50 6.59 7.29 -11.32 -0.08 6.51 16 28 O -0.46 -8.33 15.42 5.60 0.09 -8.24 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.82 7.28 -51.93 -0.38 0.44 16 31 H 0.09 0.97 7.28 -51.92 -0.38 0.59 16 32 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.40 3.88 8.62 -40.82 -0.35 3.53 16 37 H 0.39 6.65 8.55 -40.82 -0.35 6.30 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 333.96 15.07 5.03 5.03 Total: -1.00 -35.47 333.96 -5.11 -40.58 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -3.90 Total: 5.68 kcal Atomic # 6 Polarization: 30.83 SS G_CDS: -1.16 Total: 29.68 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.42 Total: -53.98 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: 0.26 Total: -27.87 kcal Atomic # 9 Polarization: -14.28 SS G_CDS: 0.10 Total: -14.17 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.47 -5.11 -40.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477101125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.963 kcal (2) G-P(sol) polarization free energy of solvation -35.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds