Wall clock time and date at job start Tue Mar 31 2020 20:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34142 * 118.70305 * 2 1 4 4 O 1.21226 * 119.35828 * 359.46994 * 3 2 1 5 5 C 1.50586 * 121.27661 * 179.45262 * 3 2 1 6 6 C 1.53268 * 109.14415 * 29.14721 * 5 3 2 7 7 C 1.53243 * 108.54998 * 304.34250 * 6 5 3 8 8 H 1.08997 * 109.57354 * 295.68367 * 7 6 5 9 9 N 1.46509 * 109.52195 * 175.53101 * 7 6 5 10 10 C 1.34773 * 120.00057 * 155.30986 * 9 7 6 11 11 O 1.21588 * 120.00109 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99770 * 179.97438 * 10 9 7 13 13 C 1.46500 * 119.99995 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.46596 * 35.00583 * 13 12 10 15 15 C 1.50696 * 109.47188 * 155.00083 * 13 12 10 16 16 H 1.08003 * 120.00087 * 0.02562 * 15 13 12 17 17 C 1.37880 * 120.00316 * 179.97438 * 15 13 12 18 18 N 1.31515 * 119.99571 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00268 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46754 * 90.00475 * 19 17 15 21 21 H 1.48498 * 109.47278 * 210.00306 * 19 17 15 22 22 H 1.48498 * 109.47109 * 330.00735 * 19 17 15 23 23 C 1.52997 * 109.47473 * 275.00486 * 13 12 10 24 24 F 1.39905 * 109.47157 * 59.99740 * 23 13 12 25 25 F 1.39900 * 109.47010 * 300.00131 * 23 13 12 26 26 F 1.39897 * 109.47422 * 179.97438 * 23 13 12 27 27 C 1.34140 * 118.70410 * 180.02562 * 2 1 3 28 28 O 1.21226 * 119.36415 * 0.52835 * 27 2 1 29 29 H 1.08998 * 109.47457 * 269.98059 * 1 2 3 30 30 H 1.09000 * 109.47220 * 29.98338 * 1 2 3 31 31 H 1.09008 * 109.47115 * 149.98209 * 1 2 3 32 32 H 1.09004 * 109.52449 * 149.02165 * 5 3 2 33 33 H 1.08996 * 109.52606 * 269.14494 * 5 3 2 34 34 H 1.08991 * 109.61921 * 184.62858 * 6 5 3 35 35 H 1.09004 * 109.63635 * 64.06277 * 6 5 3 36 36 H 0.97001 * 119.99648 * 335.32008 * 9 7 6 37 37 H 0.96995 * 120.00034 * 0.02562 * 12 10 9 38 38 H 0.97003 * 119.99476 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1092 1.1766 0.0000 4 8 1.4680 2.2053 -0.0098 5 6 3.6135 1.2442 0.0123 6 6 4.1783 0.0003 -0.6825 7 6 3.6136 -1.2441 0.0109 8 1 3.9689 -1.2812 1.0407 9 7 4.0550 -2.4450 -0.7028 10 6 4.1266 -3.6252 -0.0559 11 8 3.8244 -3.6934 1.1199 12 7 4.5322 -4.7301 -0.7126 13 6 4.6096 -6.0131 -0.0097 14 1 3.8036 -6.0758 0.7215 15 6 4.4757 -7.1387 -1.0026 16 1 4.3465 -6.9203 -2.0524 17 6 4.5194 -8.4476 -0.5711 18 7 4.6773 -8.7135 0.7071 19 14 4.3542 -9.8429 -1.8020 20 1 5.6997 -10.2237 -2.3020 21 1 3.7220 -11.0132 -1.1418 22 1 3.5098 -9.4010 -2.9408 23 6 5.9573 -6.1220 0.7063 24 9 6.0815 -5.0770 1.6281 25 9 6.9917 -6.0414 -0.2322 26 9 6.0309 -7.3470 1.3780 27 6 2.1093 -1.1766 -0.0005 28 8 1.4681 -2.2053 -0.0107 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3634 0.8901 -0.5136 31 1 -0.3634 -0.8899 -0.5141 32 1 3.9424 2.1381 -0.5179 33 1 3.9682 1.2806 1.0423 34 1 5.2655 0.0003 -0.6060 35 1 3.8825 0.0006 -1.7316 36 1 4.2959 -2.3907 -1.6408 37 1 4.7730 -4.6757 -1.6507 38 1 4.7076 -9.6343 1.0108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001477101125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:54 Heat of formation + Delta-G solvation = -250.496277 kcal Electronic energy + Delta-G solvation = -30673.093936 eV Core-core repulsion = 25714.943460 eV Total energy + Delta-G solvation = -4958.150476 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.36591 -47.99180 -47.68385 -42.79967 -40.95062 -39.83768 -37.24359 -36.47675 -36.07867 -34.56243 -33.76121 -30.41809 -28.77377 -28.27016 -26.54987 -24.49288 -24.08966 -23.40616 -21.93629 -20.26941 -19.58199 -18.85697 -18.74555 -18.54280 -18.47190 -18.37717 -17.90530 -17.50088 -16.85282 -16.48963 -16.24013 -15.70165 -15.56628 -15.40831 -15.22333 -15.03608 -14.89532 -14.51044 -14.40459 -14.25401 -14.07603 -13.98993 -13.84926 -13.82451 -13.49954 -13.41079 -13.06927 -12.89887 -12.73504 -12.64098 -12.20365 -12.09433 -11.65284 -11.55069 -11.29601 -11.25958 -10.84631 -10.67562 -10.35604 -9.88358 -8.19511 -6.50146 0.44629 1.33162 1.47727 1.48407 1.54602 1.60584 1.90164 2.17578 2.37930 2.58960 2.90155 2.96613 3.23122 3.50208 3.60857 3.82638 3.90673 3.93332 4.11434 4.24217 4.25251 4.33164 4.39260 4.43588 4.70243 4.84301 4.88881 4.96205 5.05477 5.28950 5.44853 5.54402 5.67235 5.90777 6.07346 6.38160 6.54811 6.69521 7.14648 7.20994 7.64858 8.73202 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.021005 B = 0.003212 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.681582 B = 8716.423394 C = 9344.454993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.571 5.571 3 C 0.520 3.480 4 O -0.535 6.535 5 C -0.128 4.128 6 C -0.115 4.115 7 C 0.149 3.851 8 H 0.124 0.876 9 N -0.713 5.713 10 C 0.702 3.298 11 O -0.619 6.619 12 N -0.717 5.717 13 C 0.270 3.730 14 H 0.041 0.959 15 C -0.561 4.561 16 H 0.092 0.908 17 C 0.014 3.986 18 N -0.875 5.875 19 Si 0.983 3.017 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.258 1.258 23 C 0.415 3.585 24 F -0.217 7.217 25 F -0.201 7.201 26 F -0.152 7.152 27 C 0.500 3.500 28 O -0.521 6.521 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.150 0.850 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.102 0.898 36 H 0.419 0.581 37 H 0.411 0.589 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.090 18.856 -6.638 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.314 5.314 3 C 0.313 3.687 4 O -0.410 6.410 5 C -0.167 4.167 6 C -0.153 4.153 7 C 0.039 3.961 8 H 0.142 0.858 9 N -0.371 5.371 10 C 0.402 3.598 11 O -0.499 6.499 12 N -0.371 5.371 13 C 0.162 3.838 14 H 0.059 0.941 15 C -0.598 4.598 16 H 0.110 0.890 17 C -0.191 4.191 18 N -0.509 5.509 19 Si 0.807 3.193 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.182 1.182 23 C 0.359 3.641 24 F -0.199 7.199 25 F -0.183 7.183 26 F -0.133 7.133 27 C 0.288 3.712 28 O -0.393 6.393 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.168 0.832 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.120 0.880 36 H 0.257 0.743 37 H 0.248 0.752 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.197 18.601 -5.424 19.376 hybrid contribution -0.133 -1.147 -0.559 1.283 sum 0.064 17.453 -5.984 18.450 Atomic orbital electron populations 1.21943 0.78003 1.04565 1.03826 1.46736 1.10320 1.07941 1.66434 1.21884 0.93194 0.81207 0.72458 1.90730 1.69852 1.33722 1.46736 1.22049 0.85873 1.01775 1.06991 1.22089 1.04883 0.87603 1.00676 1.21063 0.86779 0.86898 1.01388 0.85839 1.44514 1.72084 1.05465 1.15022 1.16158 0.77560 0.81257 0.84798 1.90898 1.56816 1.85373 1.16766 1.44912 1.71070 1.06562 1.14593 1.19142 0.88069 0.82614 0.93937 0.94094 1.21224 1.54645 0.89409 0.94502 0.88977 1.25999 0.93505 1.01922 0.97667 1.70545 1.44122 1.20780 1.15449 0.85159 0.78636 0.77192 0.78324 1.19674 1.20968 1.18232 1.23223 0.90189 0.73346 0.77379 1.93061 1.96912 1.60345 1.69533 1.92984 1.63033 1.96156 1.66114 1.93372 1.96406 1.42138 1.81409 1.22290 0.93079 0.82230 0.73586 1.90791 1.69125 1.34704 1.44669 0.91133 0.88383 0.90297 0.83194 0.84617 0.84487 0.87991 0.74272 0.75249 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.23 10.00 127.77 1.28 2.51 16 2 N -0.57 -12.26 2.93 -781.14 -2.29 -14.55 16 3 C 0.52 8.91 7.48 87.72 0.66 9.56 16 4 O -0.54 -12.29 16.44 -2.86 -0.05 -12.34 16 5 C -0.13 -0.87 6.07 29.90 0.18 -0.69 16 6 C -0.11 -0.81 5.56 30.77 0.17 -0.64 16 7 C 0.15 2.98 2.69 44.29 0.12 3.10 16 8 H 0.12 2.77 7.58 -2.39 -0.02 2.76 16 9 N -0.71 -17.64 4.89 -461.18 -2.26 -19.90 16 10 C 0.70 27.05 7.52 179.06 1.35 28.40 16 11 O -0.62 -29.97 14.47 -3.99 -0.06 -30.02 16 12 N -0.72 -28.58 4.99 -461.42 -2.30 -30.89 16 13 C 0.27 13.66 2.21 44.24 0.10 13.76 16 14 H 0.04 2.45 7.58 -2.39 -0.02 2.43 16 15 C -0.56 -28.42 8.47 25.60 0.22 -28.21 16 16 H 0.09 4.27 7.74 -2.91 -0.02 4.25 16 17 C 0.01 0.74 5.20 84.66 0.44 1.18 16 18 N -0.87 -48.91 9.50 21.45 0.20 -48.70 16 19 Si 0.98 40.69 29.54 68.60 2.03 42.72 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 21 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 23 C 0.42 21.31 2.81 71.98 0.20 21.51 16 24 F -0.22 -10.98 15.68 44.97 0.70 -10.27 16 25 F -0.20 -9.56 16.94 44.97 0.76 -8.80 16 26 F -0.15 -8.57 12.91 44.97 0.58 -7.99 16 27 C 0.50 13.09 7.29 87.72 0.64 13.73 16 28 O -0.52 -19.36 15.42 -2.86 -0.04 -19.41 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 1.82 7.28 -2.39 -0.02 1.81 16 31 H 0.08 1.82 7.28 -2.38 -0.02 1.80 16 32 H 0.15 0.29 8.14 -2.38 -0.02 0.27 16 33 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.14 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.42 6.95 8.62 -92.71 -0.80 6.15 16 37 H 0.41 13.28 8.55 -92.71 -0.79 12.49 16 38 H 0.27 14.21 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -80.74 333.96 2.20 -78.55 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -0.43 Total: 17.38 kcal Atomic # 6 Polarization: 58.86 SS G_CDS: 5.35 Total: 64.21 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -6.64 Total: -114.03 kcal Atomic # 8 Polarization: -61.62 SS G_CDS: -0.15 Total: -61.77 kcal Atomic # 9 Polarization: -29.11 SS G_CDS: 2.05 Total: -27.06 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -80.74 2.20 -78.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477101125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.951 kcal (2) G-P(sol) polarization free energy of solvation -80.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds