Wall clock time and date at job start Tue Mar 31 2020 20:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34141 * 118.70745 * 2 1 4 4 O 1.21227 * 119.35597 * 359.47856 * 3 2 1 5 5 C 1.50578 * 121.28050 * 179.45258 * 3 2 1 6 6 C 1.53274 * 109.21079 * 29.07932 * 5 3 2 7 7 C 1.53245 * 108.54815 * 304.46635 * 6 5 3 8 8 H 1.09000 * 109.52244 * 295.59905 * 7 6 5 9 9 N 1.46497 * 109.52383 * 175.46848 * 7 6 5 10 10 C 1.34780 * 119.99892 * 155.12521 * 9 7 6 11 11 O 1.21587 * 119.99808 * 0.02562 * 10 9 7 12 12 N 1.34774 * 119.99798 * 179.97438 * 10 9 7 13 13 C 1.46512 * 119.99594 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.46894 * 324.99871 * 13 12 10 15 15 C 1.50700 * 109.46624 * 205.00140 * 13 12 10 16 16 H 1.08002 * 119.99869 * 245.23708 * 15 13 12 17 17 C 1.37872 * 120.00004 * 65.23966 * 15 13 12 18 18 N 1.31524 * 119.99803 * 185.21714 * 17 15 13 19 19 Si 1.86796 * 120.00284 * 5.21778 * 17 15 13 20 20 H 1.48498 * 109.47289 * 265.22318 * 19 17 15 21 21 H 1.48498 * 109.46973 * 25.22544 * 19 17 15 22 22 H 1.48502 * 109.47321 * 145.22438 * 19 17 15 23 23 C 1.53000 * 109.47086 * 85.00294 * 13 12 10 24 24 F 1.39895 * 109.47138 * 174.96200 * 23 13 12 25 25 F 1.39899 * 109.46684 * 294.96249 * 23 13 12 26 26 F 1.39898 * 109.47112 * 54.96001 * 23 13 12 27 27 C 1.34141 * 118.70642 * 180.02562 * 2 1 3 28 28 O 1.21228 * 119.35765 * 0.52070 * 27 2 1 29 29 H 1.09005 * 109.47240 * 269.97831 * 1 2 3 30 30 H 1.08997 * 109.47207 * 29.98016 * 1 2 3 31 31 H 1.08998 * 109.47111 * 149.98243 * 1 2 3 32 32 H 1.09007 * 109.52012 * 149.02382 * 5 3 2 33 33 H 1.08996 * 109.52532 * 269.14393 * 5 3 2 34 34 H 1.09001 * 109.67396 * 184.72375 * 6 5 3 35 35 H 1.09003 * 109.59191 * 64.16168 * 6 5 3 36 36 H 0.96997 * 120.00547 * 335.12608 * 9 7 6 37 37 H 0.96997 * 120.00642 * 0.02562 * 12 10 9 38 38 H 0.97001 * 120.00048 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1093 1.1765 0.0000 4 8 1.4681 2.2053 -0.0096 5 6 3.6135 1.2442 0.0123 6 6 4.1800 -0.0001 -0.6807 7 6 3.6136 -1.2442 0.0119 8 1 3.9682 -1.2809 1.0419 9 7 4.0555 -2.4453 -0.7011 10 6 4.1291 -3.6248 -0.0531 11 8 3.8283 -3.6921 1.1231 12 7 4.5351 -4.7299 -0.7091 13 6 4.6145 -6.0121 -0.0048 14 1 4.9260 -5.8419 1.0257 15 6 5.6181 -6.9015 -0.6925 16 1 5.2926 -7.8128 -1.1722 17 6 6.9516 -6.5519 -0.7094 18 7 7.8117 -7.2724 -1.3956 19 14 7.5368 -5.0549 0.2425 20 1 7.5772 -3.8779 -0.6620 21 1 6.6022 -4.7853 1.3645 22 1 8.8965 -5.3116 0.7817 23 6 3.2415 -6.6871 -0.0179 24 9 3.3424 -7.9605 0.5526 25 9 2.3361 -5.9163 0.7191 26 9 2.7907 -6.8015 -1.3373 27 6 2.1093 -1.1765 -0.0005 28 8 1.4681 -2.2053 -0.0106 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 3.9423 2.1381 -0.5179 33 1 3.9682 1.2806 1.0423 34 1 5.2672 -0.0007 -0.6026 35 1 3.8859 0.0004 -1.7303 36 1 4.2951 -2.3918 -1.6395 37 1 4.7747 -4.6764 -1.6475 38 1 8.7500 -7.0267 -1.4071 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477101130.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:58 Heat of formation + Delta-G solvation = -243.248807 kcal Electronic energy + Delta-G solvation = -31006.142302 eV Core-core repulsion = 26048.306100 eV Total energy + Delta-G solvation = -4957.836202 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.00287 -46.51103 -46.49134 -41.89335 -39.68879 -38.73909 -36.26099 -35.34443 -34.69508 -33.07066 -32.39598 -29.36162 -27.91790 -27.31874 -24.98253 -23.56092 -23.30298 -21.57441 -20.47286 -19.06059 -18.48195 -17.71969 -17.66057 -17.40281 -17.31334 -16.96612 -16.68315 -16.39938 -15.77432 -15.18051 -14.81608 -14.77326 -14.53279 -14.13569 -14.01842 -13.44928 -13.37599 -13.32057 -13.06980 -13.01228 -12.95486 -12.76463 -12.71602 -12.68493 -12.63713 -12.61935 -12.27696 -11.79064 -11.54510 -11.21748 -10.70023 -10.54961 -10.45704 -10.14376 -9.94236 -9.89336 -9.74895 -9.10147 -9.01804 -8.41297 -6.54230 -4.67393 1.34567 2.24988 2.48514 2.95254 3.07353 3.16540 3.28538 3.49359 3.71693 3.97834 4.08577 4.14598 4.26861 4.30126 4.57795 4.68253 4.95877 5.01537 5.07648 5.09446 5.17301 5.22493 5.22899 5.26892 5.41591 5.44006 5.53066 5.56535 6.34408 6.38442 6.78636 6.85445 7.08825 7.21763 7.28627 7.61734 7.87812 8.49069 8.51132 8.99405 9.04720 10.53969 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.004217 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.035492 B = 6637.815983 C = 7944.795283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.569 5.569 3 C 0.521 3.479 4 O -0.508 6.508 5 C -0.137 4.137 6 C -0.132 4.132 7 C 0.152 3.848 8 H 0.131 0.869 9 N -0.736 5.736 10 C 0.698 3.302 11 O -0.577 6.577 12 N -0.727 5.727 13 C 0.220 3.780 14 H 0.093 0.907 15 C -0.534 4.534 16 H 0.095 0.905 17 C 0.096 3.904 18 N -0.862 5.862 19 Si 0.878 3.122 20 H -0.273 1.273 21 H -0.253 1.253 22 H -0.285 1.285 23 C 0.440 3.560 24 F -0.186 7.186 25 F -0.189 7.189 26 F -0.191 7.191 27 C 0.496 3.504 28 O -0.461 6.461 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.400 0.600 37 H 0.397 0.603 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.197 16.281 -0.469 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.314 5.314 3 C 0.312 3.688 4 O -0.382 6.382 5 C -0.177 4.177 6 C -0.170 4.170 7 C 0.041 3.959 8 H 0.148 0.852 9 N -0.393 5.393 10 C 0.399 3.601 11 O -0.454 6.454 12 N -0.383 5.383 13 C 0.116 3.884 14 H 0.110 0.890 15 C -0.572 4.572 16 H 0.113 0.887 17 C -0.113 4.113 18 N -0.495 5.495 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.177 1.177 22 H -0.212 1.212 23 C 0.384 3.616 24 F -0.167 7.167 25 F -0.170 7.170 26 F -0.173 7.173 27 C 0.282 3.718 28 O -0.329 6.329 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.235 0.765 37 H 0.233 0.767 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.974 16.050 0.564 17.135 hybrid contribution 0.233 0.628 -0.505 0.839 sum -5.741 16.678 0.059 17.639 Atomic orbital electron populations 1.21909 0.77772 1.04575 1.03675 1.46632 1.10062 1.07741 1.66956 1.20982 0.91414 0.82492 0.73954 1.90734 1.68775 1.33116 1.45564 1.21893 0.89762 1.00842 1.05211 1.22058 1.03393 0.90946 1.00621 1.20708 0.88368 0.85915 1.00923 0.85186 1.44927 1.73328 1.06850 1.14242 1.16334 0.77813 0.80375 0.85581 1.90900 1.55140 1.84770 1.14541 1.46841 1.69775 1.06951 1.14764 1.20170 0.87973 0.81660 0.98585 0.88966 1.20850 0.90578 1.07874 1.37924 0.88703 1.24932 0.96134 0.96640 0.93620 1.69889 1.03785 1.38625 1.37233 0.86756 0.78718 0.82469 0.81675 1.19881 1.17667 1.21167 1.21522 0.90096 0.77178 0.72809 1.93100 1.96465 1.42130 1.85050 1.93180 1.71124 1.75173 1.77550 1.93074 1.91038 1.96101 1.37085 1.21801 0.92097 0.82630 0.75250 1.90812 1.67795 1.32691 1.41556 0.91229 0.89447 0.89329 0.86213 0.86640 0.87645 0.89657 0.76480 0.76697 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 10.00 59.85 0.60 1.25 16 2 N -0.57 -6.40 2.93 -123.17 -0.36 -6.76 16 3 C 0.52 5.14 7.48 -11.33 -0.08 5.05 16 4 O -0.51 -6.37 16.44 5.60 0.09 -6.27 16 5 C -0.14 -0.80 6.07 -27.80 -0.17 -0.97 16 6 C -0.13 -0.83 5.56 -26.46 -0.15 -0.98 16 7 C 0.15 1.72 2.69 -69.01 -0.19 1.53 16 8 H 0.13 1.55 7.58 -51.93 -0.39 1.16 16 9 N -0.74 -10.20 4.89 -59.74 -0.29 -10.49 16 10 C 0.70 13.42 7.44 -86.92 -0.65 12.77 16 11 O -0.58 -13.06 14.48 5.29 0.08 -12.99 16 12 N -0.73 -14.54 3.33 -59.81 -0.20 -14.74 16 13 C 0.22 5.04 1.41 -69.08 -0.10 4.95 16 14 H 0.09 2.25 6.03 -51.93 -0.31 1.94 16 15 C -0.53 -13.47 8.62 -34.44 -0.30 -13.77 16 16 H 0.10 2.62 7.95 -52.49 -0.42 2.21 16 17 C 0.10 2.43 5.47 -17.82 -0.10 2.33 16 18 N -0.86 -23.14 13.96 55.43 0.77 -22.37 16 19 Si 0.88 19.37 26.42 -169.99 -4.49 14.88 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.25 -5.79 6.25 56.52 0.35 -5.44 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.44 10.01 2.79 37.16 0.10 10.11 16 24 F -0.19 -4.24 16.86 2.25 0.04 -4.20 16 25 F -0.19 -4.42 15.83 2.25 0.04 -4.38 16 26 F -0.19 -4.25 16.97 2.25 0.04 -4.21 16 27 C 0.50 6.66 7.29 -11.32 -0.08 6.58 16 28 O -0.46 -8.30 15.44 5.60 0.09 -8.21 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.83 7.28 -51.93 -0.38 0.45 16 31 H 0.09 0.97 7.28 -51.93 -0.38 0.60 16 32 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.40 4.31 8.62 -40.82 -0.35 3.95 16 37 H 0.40 7.14 8.61 -40.82 -0.35 6.79 16 38 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -34.21 335.17 -4.14 -38.35 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.88 Total: 7.50 kcal Atomic # 6 Polarization: 29.97 SS G_CDS: -1.11 Total: 28.87 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.08 Total: -54.37 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: 0.26 Total: -27.47 kcal Atomic # 9 Polarization: -12.91 SS G_CDS: 0.11 Total: -12.80 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.49 Total: 14.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.21 -4.14 -38.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477101130.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.899 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds