Wall clock time and date at job start Tue Mar 31 2020 20:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34141 * 118.70745 * 2 1 4 4 O 1.21227 * 119.35597 * 359.47856 * 3 2 1 5 5 C 1.50578 * 121.28050 * 179.45258 * 3 2 1 6 6 C 1.53274 * 109.21079 * 29.07932 * 5 3 2 7 7 C 1.53245 * 108.54815 * 304.46635 * 6 5 3 8 8 H 1.09000 * 109.52244 * 295.59905 * 7 6 5 9 9 N 1.46497 * 109.52383 * 175.46848 * 7 6 5 10 10 C 1.34780 * 119.99892 * 155.12521 * 9 7 6 11 11 O 1.21587 * 119.99808 * 0.02562 * 10 9 7 12 12 N 1.34774 * 119.99798 * 179.97438 * 10 9 7 13 13 C 1.46512 * 119.99594 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.46894 * 324.99871 * 13 12 10 15 15 C 1.50700 * 109.46624 * 205.00140 * 13 12 10 16 16 H 1.08002 * 119.99869 * 245.23708 * 15 13 12 17 17 C 1.37872 * 120.00004 * 65.23966 * 15 13 12 18 18 N 1.31524 * 119.99803 * 185.21714 * 17 15 13 19 19 Si 1.86796 * 120.00284 * 5.21778 * 17 15 13 20 20 H 1.48498 * 109.47289 * 265.22318 * 19 17 15 21 21 H 1.48498 * 109.46973 * 25.22544 * 19 17 15 22 22 H 1.48502 * 109.47321 * 145.22438 * 19 17 15 23 23 C 1.53000 * 109.47086 * 85.00294 * 13 12 10 24 24 F 1.39895 * 109.47138 * 174.96200 * 23 13 12 25 25 F 1.39899 * 109.46684 * 294.96249 * 23 13 12 26 26 F 1.39898 * 109.47112 * 54.96001 * 23 13 12 27 27 C 1.34141 * 118.70642 * 180.02562 * 2 1 3 28 28 O 1.21228 * 119.35765 * 0.52070 * 27 2 1 29 29 H 1.09005 * 109.47240 * 269.97831 * 1 2 3 30 30 H 1.08997 * 109.47207 * 29.98016 * 1 2 3 31 31 H 1.08998 * 109.47111 * 149.98243 * 1 2 3 32 32 H 1.09007 * 109.52012 * 149.02382 * 5 3 2 33 33 H 1.08996 * 109.52532 * 269.14393 * 5 3 2 34 34 H 1.09001 * 109.67396 * 184.72375 * 6 5 3 35 35 H 1.09003 * 109.59191 * 64.16168 * 6 5 3 36 36 H 0.96997 * 120.00547 * 335.12608 * 9 7 6 37 37 H 0.96997 * 120.00642 * 0.02562 * 12 10 9 38 38 H 0.97001 * 120.00048 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1093 1.1765 0.0000 4 8 1.4681 2.2053 -0.0096 5 6 3.6135 1.2442 0.0123 6 6 4.1800 -0.0001 -0.6807 7 6 3.6136 -1.2442 0.0119 8 1 3.9682 -1.2809 1.0419 9 7 4.0555 -2.4453 -0.7011 10 6 4.1291 -3.6248 -0.0531 11 8 3.8283 -3.6921 1.1231 12 7 4.5351 -4.7299 -0.7091 13 6 4.6145 -6.0121 -0.0048 14 1 4.9260 -5.8419 1.0257 15 6 5.6181 -6.9015 -0.6925 16 1 5.2926 -7.8128 -1.1722 17 6 6.9516 -6.5519 -0.7094 18 7 7.8117 -7.2724 -1.3956 19 14 7.5368 -5.0549 0.2425 20 1 7.5772 -3.8779 -0.6620 21 1 6.6022 -4.7853 1.3645 22 1 8.8965 -5.3116 0.7817 23 6 3.2415 -6.6871 -0.0179 24 9 3.3424 -7.9605 0.5526 25 9 2.3361 -5.9163 0.7191 26 9 2.7907 -6.8015 -1.3373 27 6 2.1093 -1.1765 -0.0005 28 8 1.4681 -2.2053 -0.0106 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 3.9423 2.1381 -0.5179 33 1 3.9682 1.2806 1.0423 34 1 5.2672 -0.0007 -0.6026 35 1 3.8859 0.0004 -1.7303 36 1 4.2951 -2.3918 -1.6395 37 1 4.7747 -4.6764 -1.6475 38 1 8.7500 -7.0267 -1.4071 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001477101130.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:57 Heat of formation + Delta-G solvation = -269.915075 kcal Electronic energy + Delta-G solvation = -31007.298638 eV Core-core repulsion = 26048.306100 eV Total energy + Delta-G solvation = -4958.992538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.86653 -48.37357 -48.35707 -42.81136 -41.02863 -39.86079 -37.34095 -36.56383 -36.11432 -34.50154 -33.86093 -30.93404 -28.80046 -28.32713 -26.91298 -24.47338 -24.08509 -23.24396 -22.01103 -20.33965 -19.91871 -19.34665 -19.02430 -18.65693 -18.49506 -18.29545 -18.26746 -17.86685 -17.02256 -16.33420 -16.20413 -15.77373 -15.56574 -15.46580 -15.35143 -15.23438 -15.21092 -14.82192 -14.80237 -14.55824 -14.55609 -14.48007 -14.08771 -13.85238 -13.70328 -13.50261 -13.40422 -12.96490 -12.91401 -12.51680 -12.12827 -11.93854 -11.85366 -11.66013 -11.41007 -11.27566 -10.94311 -10.85128 -10.41231 -9.97674 -8.49085 -6.68407 0.43767 1.23850 1.34006 1.40234 1.51217 1.55353 1.84784 1.97283 2.21899 2.30741 2.80561 2.90357 3.17761 3.25457 3.39781 3.47808 3.57595 3.68515 3.90255 4.09393 4.24045 4.32352 4.38278 4.39621 4.54695 4.69264 4.82582 4.92740 4.96870 5.02175 5.25828 5.43765 5.84100 5.90482 6.04432 6.37240 6.45585 6.68642 7.02823 7.07594 7.56222 8.63202 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.004217 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.035492 B = 6637.815983 C = 7944.795283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.570 5.570 3 C 0.520 3.480 4 O -0.535 6.535 5 C -0.127 4.127 6 C -0.118 4.118 7 C 0.147 3.853 8 H 0.128 0.872 9 N -0.719 5.719 10 C 0.697 3.303 11 O -0.612 6.612 12 N -0.727 5.727 13 C 0.233 3.767 14 H 0.080 0.920 15 C -0.541 4.541 16 H 0.060 0.940 17 C 0.061 3.939 18 N -0.903 5.903 19 Si 0.935 3.065 20 H -0.241 1.241 21 H -0.266 1.266 22 H -0.286 1.286 23 C 0.439 3.561 24 F -0.188 7.188 25 F -0.192 7.192 26 F -0.188 7.188 27 C 0.500 3.500 28 O -0.517 6.517 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.149 0.851 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.100 0.900 36 H 0.418 0.582 37 H 0.409 0.591 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.948 19.458 -0.819 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.314 5.314 3 C 0.313 3.687 4 O -0.410 6.410 5 C -0.166 4.166 6 C -0.155 4.155 7 C 0.037 3.963 8 H 0.146 0.854 9 N -0.377 5.377 10 C 0.397 3.603 11 O -0.491 6.491 12 N -0.384 5.384 13 C 0.127 3.873 14 H 0.097 0.903 15 C -0.579 4.579 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.759 3.241 20 H -0.165 1.165 21 H -0.191 1.191 22 H -0.213 1.213 23 C 0.384 3.616 24 F -0.170 7.170 25 F -0.173 7.173 26 F -0.170 7.170 27 C 0.288 3.712 28 O -0.389 6.389 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.167 0.833 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.118 0.882 36 H 0.256 0.744 37 H 0.246 0.754 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.719 19.306 0.151 19.875 hybrid contribution -0.289 -0.340 -0.386 0.590 sum -5.007 18.966 -0.235 19.618 Atomic orbital electron populations 1.21932 0.77974 1.04502 1.03836 1.46726 1.10307 1.07919 1.66452 1.21851 0.93133 0.81247 0.72485 1.90732 1.69826 1.33735 1.46731 1.22036 0.85961 1.01633 1.07012 1.22104 1.04807 0.87878 1.00747 1.21085 0.86968 0.86779 1.01495 0.85423 1.44709 1.71966 1.05922 1.15082 1.16380 0.77412 0.81293 0.85170 1.90881 1.56491 1.85515 1.16263 1.46305 1.70406 1.06489 1.15174 1.19739 0.87272 0.82485 0.97782 0.90266 1.20723 0.91559 1.07497 1.38157 0.92143 1.25537 0.95876 0.99093 0.94009 1.69970 1.04394 1.40537 1.38866 0.85868 0.77501 0.80411 0.80332 1.16471 1.19113 1.21256 1.21560 0.90141 0.77078 0.72862 1.93091 1.96476 1.42315 1.85105 1.93176 1.71218 1.75248 1.77663 1.93074 1.91001 1.96084 1.36827 1.22230 0.92969 0.82278 0.73711 1.90797 1.69030 1.34577 1.44485 0.91047 0.88489 0.90344 0.83315 0.84489 0.84652 0.88173 0.74418 0.75400 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.22 10.00 127.77 1.28 2.50 16 2 N -0.57 -11.98 2.93 -781.15 -2.29 -14.27 16 3 C 0.52 8.78 7.48 87.72 0.66 9.44 16 4 O -0.54 -12.18 16.44 -2.87 -0.05 -12.23 16 5 C -0.13 -0.86 6.07 29.90 0.18 -0.68 16 6 C -0.12 -0.88 5.56 30.77 0.17 -0.71 16 7 C 0.15 2.88 2.69 44.29 0.12 3.00 16 8 H 0.13 2.68 7.58 -2.39 -0.02 2.67 16 9 N -0.72 -17.95 4.89 -461.19 -2.25 -20.20 16 10 C 0.70 25.69 7.44 179.05 1.33 27.02 16 11 O -0.61 -27.25 14.48 -3.99 -0.06 -27.30 16 12 N -0.73 -28.24 3.33 -461.39 -1.54 -29.77 16 13 C 0.23 10.70 1.41 44.24 0.06 10.76 16 14 H 0.08 3.89 6.03 -2.39 -0.01 3.87 16 15 C -0.54 -27.67 8.62 25.60 0.22 -27.45 16 16 H 0.06 3.46 7.95 -2.91 -0.02 3.44 16 17 C 0.06 3.06 5.47 84.65 0.46 3.52 16 18 N -0.90 -48.68 13.96 21.45 0.30 -48.38 16 19 Si 0.94 38.93 26.42 68.60 1.81 40.74 16 20 H -0.24 -8.74 7.11 99.48 0.71 -8.03 16 21 H -0.27 -11.69 6.25 99.48 0.62 -11.07 16 22 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 23 C 0.44 20.20 2.79 71.98 0.20 20.40 16 24 F -0.19 -8.74 16.86 44.97 0.76 -7.98 16 25 F -0.19 -9.03 15.83 44.97 0.71 -8.32 16 26 F -0.19 -8.41 16.97 44.97 0.76 -7.65 16 27 C 0.50 12.76 7.29 87.72 0.64 13.40 16 28 O -0.52 -18.67 15.44 -2.87 -0.04 -18.71 16 29 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.10 1.78 7.28 -2.39 -0.02 1.76 16 31 H 0.08 1.77 7.28 -2.39 -0.02 1.76 16 32 H 0.15 0.32 8.14 -2.38 -0.02 0.30 16 33 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.42 7.49 8.62 -92.71 -0.80 6.69 16 37 H 0.41 14.03 8.61 -92.71 -0.80 13.23 16 38 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -76.51 335.17 2.92 -73.59 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -0.52 Total: 19.29 kcal Atomic # 6 Polarization: 55.88 SS G_CDS: 5.32 Total: 61.20 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -5.78 Total: -112.62 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: -0.15 Total: -58.24 kcal Atomic # 9 Polarization: -26.19 SS G_CDS: 2.23 Total: -23.95 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.81 Total: 40.74 kcal Total: -76.51 2.92 -73.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477101130.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.323 kcal (2) G-P(sol) polarization free energy of solvation -76.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds