Wall clock time and date at job start Tue Mar 31 2020 20:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34141 * 118.70521 * 2 1 4 4 O 1.21232 * 119.35651 * 0.82645 * 3 2 1 5 5 C 1.50581 * 121.27999 * 180.82315 * 3 2 1 6 6 C 1.53243 * 109.17256 * 330.92079 * 5 3 2 7 7 C 1.53245 * 108.56577 * 55.59779 * 6 5 3 8 8 H 1.09003 * 109.52243 * 64.29122 * 7 6 5 9 9 N 1.46495 * 109.57495 * 184.45088 * 7 6 5 10 10 C 1.34780 * 120.00161 * 204.71786 * 9 7 6 11 11 O 1.21585 * 119.99711 * 359.97438 * 10 9 7 12 12 N 1.34771 * 119.99853 * 179.97438 * 10 9 7 13 13 C 1.46502 * 119.99862 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47362 * 325.00229 * 13 12 10 15 15 C 1.50692 * 109.47401 * 204.99921 * 13 12 10 16 16 H 1.08005 * 120.00194 * 265.32866 * 15 13 12 17 17 C 1.37876 * 120.00279 * 85.33342 * 15 13 12 18 18 N 1.31506 * 120.00286 * 185.05609 * 17 15 13 19 19 Si 1.86807 * 119.99780 * 5.04814 * 17 15 13 20 20 H 1.48500 * 109.46751 * 84.64867 * 19 17 15 21 21 H 1.48498 * 109.47040 * 204.64948 * 19 17 15 22 22 H 1.48501 * 109.47113 * 324.64937 * 19 17 15 23 23 C 1.53005 * 109.47166 * 84.99970 * 13 12 10 24 24 F 1.39893 * 109.47129 * 64.12480 * 23 13 12 25 25 F 1.39895 * 109.47508 * 184.13160 * 23 13 12 26 26 F 1.39906 * 109.46992 * 304.12895 * 23 13 12 27 27 C 1.34143 * 118.70652 * 180.26300 * 2 1 3 28 28 O 1.21232 * 119.35977 * 359.17898 * 27 2 1 29 29 H 1.09001 * 109.47398 * 269.72860 * 1 2 3 30 30 H 1.08994 * 109.47256 * 29.73470 * 1 2 3 31 31 H 1.09008 * 109.46904 * 149.73161 * 1 2 3 32 32 H 1.08999 * 109.53377 * 211.00331 * 5 3 2 33 33 H 1.09004 * 109.50285 * 90.82454 * 5 3 2 34 34 H 1.09001 * 109.61821 * 295.87484 * 6 5 3 35 35 H 1.08999 * 109.77442 * 175.41186 * 6 5 3 36 36 H 0.97001 * 120.00011 * 24.71075 * 9 7 6 37 37 H 0.96999 * 120.00500 * 359.97438 * 12 10 9 38 38 H 0.96999 * 120.00397 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1093 1.1766 0.0000 4 8 1.4681 2.2053 0.0152 5 6 3.6135 1.2443 -0.0185 6 6 4.1818 -0.0016 0.6693 7 6 3.6136 -1.2441 -0.0247 8 1 3.9635 -1.2771 -1.0565 9 7 4.0586 -2.4477 0.6819 10 6 4.1269 -3.6255 0.0301 11 8 3.8186 -3.6890 -1.1443 12 7 4.5368 -4.7326 0.6801 13 6 4.6105 -6.0129 -0.0283 14 1 3.8003 -6.0732 -0.7550 15 6 4.4830 -7.1424 0.9610 16 1 5.3693 -7.6055 1.3691 17 6 3.2350 -7.5850 1.3451 18 7 3.1217 -8.5016 2.2813 19 14 1.7049 -6.8823 0.5358 20 1 1.4295 -7.6179 -0.7244 21 1 0.5481 -7.0258 1.4558 22 1 1.9211 -5.4447 0.2328 23 6 5.9541 -6.1184 -0.7526 24 9 6.9903 -6.1356 0.1871 25 9 5.9870 -7.2975 -1.5049 26 9 6.1134 -5.0185 -1.6024 27 6 2.1093 -1.1765 -0.0054 28 8 1.4682 -2.2054 0.0050 29 1 -0.3634 -0.0049 1.0276 30 1 -0.3633 0.8923 -0.5097 31 1 -0.3633 -0.8876 -0.5180 32 1 3.9447 2.1366 0.5127 33 1 3.9634 1.2825 -1.0501 34 1 3.8915 -0.0042 1.7199 35 1 5.2689 -0.0031 0.5900 36 1 4.3043 -2.3971 1.6189 37 1 4.7831 -4.6819 1.6169 38 1 2.2436 -8.8126 2.5518 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477101133.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:01 Heat of formation + Delta-G solvation = -246.329176 kcal Electronic energy + Delta-G solvation = -30857.749653 eV Core-core repulsion = 25899.779877 eV Total energy + Delta-G solvation = -4957.969777 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.06335 -46.57155 -46.55760 -41.87563 -39.63260 -38.70223 -36.22917 -35.31605 -34.61932 -33.04482 -32.41195 -29.34785 -27.90236 -27.30443 -24.96659 -23.54764 -23.29114 -21.57786 -20.41654 -19.06383 -18.50514 -17.68888 -17.66159 -17.41926 -17.30184 -16.96083 -16.66421 -16.42690 -15.72482 -15.19984 -14.82896 -14.65254 -14.51164 -14.14117 -13.94381 -13.54727 -13.44127 -13.43571 -13.07666 -12.99427 -12.91226 -12.77718 -12.75651 -12.67652 -12.57621 -12.49657 -12.29535 -11.77482 -11.53336 -11.10886 -10.68476 -10.54017 -10.44585 -10.11972 -9.88819 -9.81069 -9.73629 -9.04897 -8.95815 -8.35323 -6.52784 -4.68626 1.36070 2.27106 2.50769 2.99266 3.21198 3.27507 3.45255 3.51790 3.74955 3.96965 4.14497 4.16652 4.27954 4.32696 4.59945 4.69436 4.93212 5.02297 5.09040 5.17895 5.18686 5.22182 5.23090 5.24738 5.42377 5.44362 5.54200 5.58228 6.29310 6.40775 6.80577 6.87227 7.15861 7.23437 7.32446 7.63611 7.90137 8.52333 8.56769 9.03456 9.11048 10.54617 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015283 B = 0.004134 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.686761 B = 6771.201623 C = 7934.252482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.569 5.569 3 C 0.521 3.479 4 O -0.509 6.509 5 C -0.137 4.137 6 C -0.131 4.131 7 C 0.153 3.847 8 H 0.131 0.869 9 N -0.736 5.736 10 C 0.701 3.299 11 O -0.582 6.582 12 N -0.725 5.725 13 C 0.223 3.777 14 H 0.088 0.912 15 C -0.537 4.537 16 H 0.095 0.905 17 C 0.102 3.898 18 N -0.859 5.859 19 Si 0.864 3.136 20 H -0.268 1.268 21 H -0.283 1.283 22 H -0.242 1.242 23 C 0.440 3.560 24 F -0.191 7.191 25 F -0.185 7.185 26 F -0.195 7.195 27 C 0.494 3.506 28 O -0.462 6.462 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.400 0.600 37 H 0.396 0.604 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.907 17.904 -1.066 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.314 5.314 3 C 0.311 3.689 4 O -0.382 6.382 5 C -0.177 4.177 6 C -0.169 4.169 7 C 0.042 3.958 8 H 0.148 0.852 9 N -0.393 5.393 10 C 0.402 3.598 11 O -0.459 6.459 12 N -0.380 5.380 13 C 0.119 3.881 14 H 0.106 0.894 15 C -0.575 4.575 16 H 0.113 0.887 17 C -0.108 4.108 18 N -0.491 5.491 19 Si 0.688 3.312 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.165 1.165 23 C 0.384 3.616 24 F -0.172 7.172 25 F -0.167 7.167 26 F -0.176 7.176 27 C 0.280 3.720 28 O -0.330 6.330 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.234 0.766 37 H 0.231 0.769 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.865 17.605 -2.044 17.744 hybrid contribution -0.585 0.241 0.472 0.790 sum 0.280 17.846 -1.572 17.917 Atomic orbital electron populations 1.21910 0.77808 1.04628 1.03591 1.46648 1.10052 1.07765 1.66936 1.20993 0.91438 0.82477 0.73959 1.90735 1.68792 1.33129 1.45580 1.21884 0.89735 1.00830 1.05222 1.22032 1.03329 0.90948 1.00590 1.20697 0.88158 0.85943 1.01007 0.85164 1.44931 1.73205 1.06773 1.14411 1.16321 0.77956 0.80241 0.85326 1.90879 1.55519 1.84687 1.14835 1.46858 1.69874 1.06832 1.14410 1.19889 0.88936 0.84106 0.95170 0.89439 1.20786 0.95866 1.14586 1.26273 0.88749 1.24962 0.99155 0.93395 0.93316 1.69861 1.25554 1.27302 1.26432 0.86980 0.81853 0.82406 0.79924 1.19352 1.20916 1.16524 1.21624 0.89873 0.72687 0.77412 1.93072 1.62511 1.96201 1.65434 1.93099 1.96966 1.48983 1.77607 1.93135 1.96557 1.54951 1.72980 1.21881 0.92237 0.82601 0.75233 1.90822 1.67846 1.32740 1.41561 0.91279 0.89444 0.89335 0.86248 0.86635 0.89761 0.87621 0.76571 0.76856 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.68 9.98 59.85 0.60 1.27 16 2 N -0.57 -6.58 2.93 -123.17 -0.36 -6.94 16 3 C 0.52 5.18 7.48 -11.33 -0.08 5.10 16 4 O -0.51 -6.43 16.45 5.60 0.09 -6.34 16 5 C -0.14 -0.78 6.07 -27.82 -0.17 -0.94 16 6 C -0.13 -0.78 5.56 -26.48 -0.15 -0.93 16 7 C 0.15 1.71 2.69 -69.01 -0.19 1.53 16 8 H 0.13 1.53 7.58 -51.93 -0.39 1.13 16 9 N -0.74 -10.01 4.89 -59.75 -0.29 -10.30 16 10 C 0.70 13.40 7.28 -86.92 -0.63 12.77 16 11 O -0.58 -13.22 14.50 5.29 0.08 -13.14 16 12 N -0.72 -14.34 4.94 -59.81 -0.30 -14.64 16 13 C 0.22 5.11 1.45 -69.08 -0.10 5.01 16 14 H 0.09 2.18 5.33 -51.93 -0.28 1.91 16 15 C -0.54 -13.67 8.68 -34.44 -0.30 -13.96 16 16 H 0.09 2.58 7.69 -52.48 -0.40 2.18 16 17 C 0.10 2.69 5.47 -17.82 -0.10 2.59 16 18 N -0.86 -23.68 13.96 55.43 0.77 -22.90 16 19 Si 0.86 20.90 26.92 -169.99 -4.58 16.32 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.24 -6.11 6.83 56.52 0.39 -5.72 16 23 C 0.44 9.64 2.83 37.16 0.11 9.75 16 24 F -0.19 -4.02 16.65 2.25 0.04 -3.98 16 25 F -0.18 -4.14 17.12 2.25 0.04 -4.10 16 26 F -0.19 -4.18 15.57 2.25 0.04 -4.14 16 27 C 0.49 6.82 7.29 -11.32 -0.08 6.74 16 28 O -0.46 -8.69 15.44 5.60 0.09 -8.60 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.87 7.29 -51.93 -0.38 0.49 16 31 H 0.09 1.04 7.30 -51.92 -0.38 0.66 16 32 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.40 4.14 8.62 -40.82 -0.35 3.79 16 37 H 0.40 6.92 8.61 -40.82 -0.35 6.57 16 38 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 336.59 15.07 5.07 5.07 Total: -1.00 -34.88 336.59 -4.21 -39.09 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -3.80 Total: 5.68 kcal Atomic # 6 Polarization: 30.02 SS G_CDS: -1.10 Total: 28.92 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.17 Total: -54.78 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: 0.26 Total: -28.08 kcal Atomic # 9 Polarization: -12.33 SS G_CDS: 0.11 Total: -12.22 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.58 Total: 16.32 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.88 -4.21 -39.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477101133.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.244 kcal (2) G-P(sol) polarization free energy of solvation -34.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds