Wall clock time and date at job start Tue Mar 31 2020 20:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34141 * 118.70521 * 2 1 4 4 O 1.21232 * 119.35651 * 0.82645 * 3 2 1 5 5 C 1.50581 * 121.27999 * 180.82315 * 3 2 1 6 6 C 1.53243 * 109.17256 * 330.92079 * 5 3 2 7 7 C 1.53245 * 108.56577 * 55.59779 * 6 5 3 8 8 H 1.09003 * 109.52243 * 64.29122 * 7 6 5 9 9 N 1.46495 * 109.57495 * 184.45088 * 7 6 5 10 10 C 1.34780 * 120.00161 * 204.71786 * 9 7 6 11 11 O 1.21585 * 119.99711 * 359.97438 * 10 9 7 12 12 N 1.34771 * 119.99853 * 179.97438 * 10 9 7 13 13 C 1.46502 * 119.99862 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47362 * 325.00229 * 13 12 10 15 15 C 1.50692 * 109.47401 * 204.99921 * 13 12 10 16 16 H 1.08005 * 120.00194 * 265.32866 * 15 13 12 17 17 C 1.37876 * 120.00279 * 85.33342 * 15 13 12 18 18 N 1.31506 * 120.00286 * 185.05609 * 17 15 13 19 19 Si 1.86807 * 119.99780 * 5.04814 * 17 15 13 20 20 H 1.48500 * 109.46751 * 84.64867 * 19 17 15 21 21 H 1.48498 * 109.47040 * 204.64948 * 19 17 15 22 22 H 1.48501 * 109.47113 * 324.64937 * 19 17 15 23 23 C 1.53005 * 109.47166 * 84.99970 * 13 12 10 24 24 F 1.39893 * 109.47129 * 64.12480 * 23 13 12 25 25 F 1.39895 * 109.47508 * 184.13160 * 23 13 12 26 26 F 1.39906 * 109.46992 * 304.12895 * 23 13 12 27 27 C 1.34143 * 118.70652 * 180.26300 * 2 1 3 28 28 O 1.21232 * 119.35977 * 359.17898 * 27 2 1 29 29 H 1.09001 * 109.47398 * 269.72860 * 1 2 3 30 30 H 1.08994 * 109.47256 * 29.73470 * 1 2 3 31 31 H 1.09008 * 109.46904 * 149.73161 * 1 2 3 32 32 H 1.08999 * 109.53377 * 211.00331 * 5 3 2 33 33 H 1.09004 * 109.50285 * 90.82454 * 5 3 2 34 34 H 1.09001 * 109.61821 * 295.87484 * 6 5 3 35 35 H 1.08999 * 109.77442 * 175.41186 * 6 5 3 36 36 H 0.97001 * 120.00011 * 24.71075 * 9 7 6 37 37 H 0.96999 * 120.00500 * 359.97438 * 12 10 9 38 38 H 0.96999 * 120.00397 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1093 1.1766 0.0000 4 8 1.4681 2.2053 0.0152 5 6 3.6135 1.2443 -0.0185 6 6 4.1818 -0.0016 0.6693 7 6 3.6136 -1.2441 -0.0247 8 1 3.9635 -1.2771 -1.0565 9 7 4.0586 -2.4477 0.6819 10 6 4.1269 -3.6255 0.0301 11 8 3.8186 -3.6890 -1.1443 12 7 4.5368 -4.7326 0.6801 13 6 4.6105 -6.0129 -0.0283 14 1 3.8003 -6.0732 -0.7550 15 6 4.4830 -7.1424 0.9610 16 1 5.3693 -7.6055 1.3691 17 6 3.2350 -7.5850 1.3451 18 7 3.1217 -8.5016 2.2813 19 14 1.7049 -6.8823 0.5358 20 1 1.4295 -7.6179 -0.7244 21 1 0.5481 -7.0258 1.4558 22 1 1.9211 -5.4447 0.2328 23 6 5.9541 -6.1184 -0.7526 24 9 6.9903 -6.1356 0.1871 25 9 5.9870 -7.2975 -1.5049 26 9 6.1134 -5.0185 -1.6024 27 6 2.1093 -1.1765 -0.0054 28 8 1.4682 -2.2054 0.0050 29 1 -0.3634 -0.0049 1.0276 30 1 -0.3633 0.8923 -0.5097 31 1 -0.3633 -0.8876 -0.5180 32 1 3.9447 2.1366 0.5127 33 1 3.9634 1.2825 -1.0501 34 1 3.8915 -0.0042 1.7199 35 1 5.2689 -0.0031 0.5900 36 1 4.3043 -2.3971 1.6189 37 1 4.7831 -4.6819 1.6169 38 1 2.2436 -8.8126 2.5518 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001477101133.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:00 Heat of formation + Delta-G solvation = -274.254509 kcal Electronic energy + Delta-G solvation = -30858.960587 eV Core-core repulsion = 25899.779877 eV Total energy + Delta-G solvation = -4959.180710 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.83288 -48.34275 -48.31417 -42.81386 -40.96801 -39.86075 -37.30706 -36.53790 -36.09884 -34.55610 -33.85963 -30.92900 -28.81115 -28.32489 -26.88540 -24.47978 -24.08290 -23.23047 -21.95805 -20.42523 -19.86003 -19.28083 -18.96710 -18.67256 -18.52373 -18.31972 -18.25442 -17.83526 -17.05047 -16.35992 -16.19465 -15.69995 -15.67015 -15.42920 -15.31603 -15.24388 -15.13054 -14.87365 -14.76845 -14.52039 -14.47129 -14.45785 -14.23880 -13.73493 -13.67989 -13.55959 -13.35228 -13.06945 -12.95977 -12.54321 -12.12838 -12.06031 -11.84496 -11.64853 -11.37603 -11.26837 -10.99828 -10.87792 -10.37358 -9.91876 -8.57606 -6.74122 0.42975 1.20024 1.30355 1.33533 1.47363 1.54579 1.84329 1.99140 2.15704 2.33542 2.78292 2.91190 3.14068 3.36531 3.40323 3.49029 3.59315 3.75758 3.92470 4.10480 4.21520 4.30528 4.36361 4.39154 4.48699 4.66802 4.83357 4.94278 4.95400 5.04127 5.29711 5.52287 5.81211 5.89607 6.07728 6.36879 6.44511 6.67845 6.99531 7.14532 7.62599 8.54177 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015283 B = 0.004134 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.686761 B = 6771.201623 C = 7934.252482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.571 5.571 3 C 0.520 3.480 4 O -0.535 6.535 5 C -0.126 4.126 6 C -0.115 4.115 7 C 0.149 3.851 8 H 0.129 0.871 9 N -0.719 5.719 10 C 0.699 3.301 11 O -0.619 6.619 12 N -0.724 5.724 13 C 0.230 3.770 14 H 0.069 0.931 15 C -0.534 4.534 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.895 5.895 19 Si 0.914 3.086 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.258 1.258 23 C 0.444 3.556 24 F -0.184 7.184 25 F -0.189 7.189 26 F -0.189 7.189 27 C 0.497 3.503 28 O -0.523 6.523 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.139 0.861 36 H 0.418 0.582 37 H 0.409 0.591 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 20.545 -0.761 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.315 5.315 3 C 0.312 3.688 4 O -0.411 6.411 5 C -0.166 4.166 6 C -0.153 4.153 7 C 0.039 3.961 8 H 0.146 0.854 9 N -0.376 5.376 10 C 0.400 3.600 11 O -0.499 6.499 12 N -0.380 5.380 13 C 0.125 3.875 14 H 0.087 0.913 15 C -0.572 4.572 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.529 5.529 19 Si 0.739 3.261 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.182 1.182 23 C 0.388 3.612 24 F -0.165 7.165 25 F -0.170 7.170 26 F -0.170 7.170 27 C 0.286 3.714 28 O -0.395 6.395 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.167 0.833 33 H 0.156 0.844 34 H 0.116 0.884 35 H 0.157 0.843 36 H 0.256 0.744 37 H 0.246 0.754 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.187 20.322 -1.692 20.509 hybrid contribution -0.979 -0.446 0.337 1.127 sum 1.208 19.876 -1.356 19.959 Atomic orbital electron populations 1.21925 0.78129 1.04275 1.03938 1.46755 1.10252 1.08004 1.66441 1.21911 0.93244 0.81160 0.72443 1.90733 1.69873 1.33728 1.46726 1.22039 0.85741 1.01688 1.07109 1.22077 1.04919 0.87720 1.00576 1.21077 0.86485 0.86891 1.01652 0.85355 1.44679 1.71820 1.05823 1.15244 1.16360 0.77479 0.81225 0.84960 1.90856 1.56902 1.85474 1.16635 1.46221 1.70479 1.06332 1.14924 1.19521 0.89078 0.84665 0.94267 0.91329 1.20735 0.94889 1.15385 1.26189 0.90908 1.25344 1.00736 0.93638 0.93611 1.69907 1.26211 1.28871 1.27959 0.86231 0.80140 0.80657 0.79099 1.19603 1.20529 1.18204 1.21398 0.89612 0.72722 0.77440 1.93084 1.62068 1.96174 1.65196 1.93093 1.96976 1.49259 1.77699 1.93145 1.96502 1.54613 1.72776 1.22400 0.93269 0.82198 0.73563 1.90805 1.69188 1.34772 1.44721 0.90658 0.88588 0.90817 0.83277 0.84389 0.88402 0.84288 0.74446 0.75387 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.28 9.98 127.77 1.27 2.56 16 2 N -0.57 -12.47 2.93 -781.13 -2.29 -14.76 16 3 C 0.52 8.96 7.48 87.72 0.66 9.61 16 4 O -0.54 -12.39 16.45 -2.88 -0.05 -12.43 16 5 C -0.13 -0.83 6.07 29.89 0.18 -0.65 16 6 C -0.12 -0.81 5.56 30.76 0.17 -0.64 16 7 C 0.15 2.94 2.69 44.29 0.12 3.06 16 8 H 0.13 2.69 7.58 -2.39 -0.02 2.67 16 9 N -0.72 -17.87 4.89 -461.20 -2.26 -20.12 16 10 C 0.70 25.90 7.28 179.06 1.30 27.20 16 11 O -0.62 -27.79 14.50 -3.98 -0.06 -27.85 16 12 N -0.72 -27.96 4.94 -461.42 -2.28 -30.24 16 13 C 0.23 10.52 1.45 44.24 0.06 10.58 16 14 H 0.07 3.44 5.33 -2.39 -0.01 3.43 16 15 C -0.53 -27.27 8.68 25.60 0.22 -27.05 16 16 H 0.07 4.02 7.69 -2.91 -0.02 4.00 16 17 C 0.07 3.90 5.47 84.66 0.46 4.36 16 18 N -0.89 -49.71 13.96 21.45 0.30 -49.41 16 19 Si 0.91 43.94 26.92 68.60 1.85 45.79 16 20 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.26 -13.05 6.83 99.48 0.68 -12.37 16 23 C 0.44 19.14 2.83 71.98 0.20 19.34 16 24 F -0.18 -7.52 16.65 44.97 0.75 -6.77 16 25 F -0.19 -8.36 17.12 44.97 0.77 -7.59 16 26 F -0.19 -7.87 15.57 44.97 0.70 -7.17 16 27 C 0.50 13.21 7.29 87.72 0.64 13.85 16 28 O -0.52 -19.88 15.44 -2.88 -0.04 -19.93 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.88 7.29 -2.39 -0.02 1.87 16 31 H 0.07 1.82 7.30 -2.38 -0.02 1.80 16 32 H 0.15 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.14 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.42 7.37 8.62 -92.71 -0.80 6.57 16 37 H 0.41 13.74 8.61 -92.71 -0.80 12.94 16 38 H 0.28 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -77.64 336.59 2.23 -75.41 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -0.46 Total: 12.84 kcal Atomic # 6 Polarization: 56.94 SS G_CDS: 5.30 Total: 62.24 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -6.52 Total: -114.53 kcal Atomic # 8 Polarization: -60.06 SS G_CDS: -0.15 Total: -60.21 kcal Atomic # 9 Polarization: -23.75 SS G_CDS: 2.22 Total: -21.53 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.85 Total: 45.79 kcal Total: -77.64 2.23 -75.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477101133.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.843 kcal (2) G-P(sol) polarization free energy of solvation -77.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds