Wall clock time and date at job start Tue Mar 31 2020 19:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00176 * 2 1 4 4 H 1.48507 * 109.47076 * 270.00277 * 3 2 1 5 5 H 1.48507 * 109.47041 * 29.99823 * 3 2 1 6 6 H 1.48493 * 109.47322 * 149.99823 * 3 2 1 7 7 C 1.38950 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99965 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00136 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00154 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99610 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99947 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47110 * 179.97438 * 12 10 9 14 14 C 1.48290 * 111.00326 * 78.71875 * 13 12 10 15 15 C 1.55476 * 105.13355 * 122.46383 * 14 13 12 16 16 H 1.09002 * 116.00331 * 159.81379 * 15 14 13 17 17 C 1.57417 * 99.75641 * 32.93322 * 15 14 13 18 18 C 1.49706 * 111.00331 * 196.32055 * 13 12 10 19 19 H 1.09003 * 116.16611 * 75.28024 * 18 13 12 20 20 C 1.56021 * 104.08204 * 306.12337 * 18 13 12 21 21 N 1.47859 * 105.11364 * 288.80013 * 20 18 13 22 22 C 1.34773 * 126.92687 * 181.91973 * 21 20 18 23 23 O 1.21623 * 120.00058 * 180.02562 * 22 21 20 24 24 C 1.47169 * 120.00264 * 0.29057 * 22 21 20 25 25 C 1.38242 * 128.48062 * 179.72460 * 24 22 21 26 26 N 1.31238 * 111.89446 * 180.02562 * 25 24 22 27 27 N 1.27336 * 120.03495 * 359.97438 * 26 25 24 28 28 S 1.56639 * 109.74249 * 359.70274 * 27 26 25 29 29 H 0.96998 * 120.00156 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99489 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47665 * 59.99699 * 12 10 9 32 32 H 1.08997 * 109.47282 * 299.99304 * 12 10 9 33 33 H 1.08998 * 110.32626 * 241.44479 * 14 13 12 34 34 H 1.09003 * 110.31489 * 3.54763 * 14 13 12 35 35 H 1.09001 * 112.52374 * 191.54274 * 17 15 14 36 36 H 1.09010 * 112.30636 * 64.03995 * 17 15 14 37 37 H 1.09002 * 110.31114 * 169.88810 * 20 18 13 38 38 H 1.09001 * 110.31654 * 47.71349 * 20 18 13 39 39 H 1.08001 * 124.05369 * 0.04523 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4472 -3.4209 0.0011 12 6 5.5606 -2.3705 0.0022 13 7 6.0503 -3.7555 0.0026 14 6 5.9732 -4.3469 -1.3551 15 6 7.4268 -4.7850 -1.6901 16 1 7.5314 -5.5332 -2.4759 17 6 7.9253 -5.1792 -0.2499 18 6 7.4934 -3.8143 0.3965 19 1 7.7086 -3.6745 1.4559 20 6 8.1958 -2.8271 -0.5867 21 7 8.1615 -3.5028 -1.9014 22 6 8.6833 -3.0498 -3.0585 23 8 8.5814 -3.7134 -4.0726 24 6 9.3817 -1.7548 -3.0936 25 6 9.9817 -1.1301 -4.1710 26 7 10.5127 0.0221 -3.8351 27 7 10.4336 0.4340 -2.6328 28 16 9.6524 -0.6108 -1.7659 29 1 -0.4850 0.8400 -0.0004 30 1 3.8648 -0.3633 0.0007 31 1 5.9234 -1.8571 0.8926 32 1 5.9247 -1.8564 -0.8873 33 1 5.3075 -5.2100 -1.3549 34 1 5.6274 -3.6029 -2.0728 35 1 9.0034 -5.3346 -0.2092 36 1 7.3746 -6.0254 0.1613 37 1 9.2264 -2.6539 -0.2769 38 1 7.6498 -1.8848 -0.6311 39 1 10.0099 -1.5408 -5.1695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481663657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:52 Heat of formation + Delta-G solvation = 69.972603 kcal Electronic energy + Delta-G solvation = -27033.376395 eV Core-core repulsion = 23106.024855 eV Total energy + Delta-G solvation = -3927.351540 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.63143 -41.12528 -38.97654 -38.08675 -34.46100 -33.83864 -32.64760 -31.74854 -31.19590 -30.17588 -27.99569 -26.87457 -25.43415 -24.18571 -23.48500 -21.32726 -20.94512 -19.92324 -19.60734 -19.02982 -18.25228 -17.63788 -17.08474 -16.66499 -16.19718 -15.64239 -15.39214 -15.26730 -14.91485 -14.81963 -14.14004 -13.91677 -13.58787 -13.22767 -13.03814 -13.01218 -12.64696 -12.52984 -12.42152 -12.36172 -12.02347 -11.94771 -11.67126 -11.46223 -11.30991 -11.07698 -10.70179 -10.64463 -10.50162 -10.44224 -10.24620 -10.01652 -9.60799 -9.23601 -8.69120 -8.22505 -8.16165 -6.34654 -3.86291 -0.67931 0.38705 1.08066 1.57252 2.24083 2.55090 2.97147 3.02336 3.11419 3.52407 3.57583 3.67364 3.84018 4.01286 4.06208 4.19581 4.29467 4.41453 4.63756 4.67360 4.77702 4.91217 5.11839 5.15476 5.19188 5.34122 5.35951 5.47634 5.51026 5.52048 5.68487 5.75573 5.86599 6.06933 6.69171 6.82320 6.92939 7.23848 7.52610 7.53633 8.10014 8.55884 8.91546 9.38134 9.78555 10.78513 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011293 B = 0.003938 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.825671 B = 7107.908662 C = 8698.615481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.043 3.957 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.592 5.592 10 C 0.453 3.547 11 O -0.555 6.555 12 C 0.030 3.970 13 N -0.485 5.485 14 C 0.038 3.962 15 C 0.113 3.887 16 H 0.133 0.867 17 C -0.130 4.130 18 C 0.060 3.940 19 H 0.143 0.857 20 C 0.041 3.959 21 N -0.612 5.612 22 C 0.619 3.381 23 O -0.516 6.516 24 C -0.285 4.285 25 C 0.074 3.926 26 N -0.251 5.251 27 N -0.264 5.264 28 S 0.429 5.571 29 H 0.274 0.726 30 H 0.369 0.631 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.268 -4.191 -0.693 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.160 4.160 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.138 0.862 9 N -0.232 5.232 10 C 0.238 3.762 11 O -0.435 6.435 12 C -0.102 4.102 13 N -0.209 5.209 14 C -0.091 4.091 15 C 0.010 3.990 16 H 0.151 0.849 17 C -0.168 4.168 18 C -0.048 4.048 19 H 0.160 0.840 20 C -0.085 4.085 21 N -0.347 5.347 22 C 0.405 3.595 23 O -0.393 6.393 24 C -0.426 4.426 25 C -0.093 4.093 26 N -0.115 5.115 27 N -0.245 5.245 28 S 0.564 5.436 29 H 0.084 0.916 30 H 0.201 0.799 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.119 0.881 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 22.811 -3.822 0.141 23.129 hybrid contribution 0.759 1.252 -1.685 2.232 sum 23.570 -2.570 -1.544 23.760 Atomic orbital electron populations 1.69611 1.05620 1.27504 1.49302 1.25019 0.95463 0.97882 0.97672 0.86719 0.79826 0.84246 0.78862 1.19717 1.20066 1.19510 1.19416 0.79147 0.96622 1.48142 0.86238 1.42205 1.07557 1.06034 1.67415 1.19548 0.87799 0.84629 0.84257 1.90570 1.69173 1.30811 1.52986 1.22209 0.96355 0.90118 1.01517 1.64604 1.14720 1.17260 1.24284 1.23625 0.94612 1.01628 0.89233 1.24280 0.91729 0.85083 0.97860 0.84885 1.24006 1.01545 0.97646 0.93587 1.24819 0.87581 0.93743 0.98687 0.83994 1.23663 1.02287 0.98282 0.84218 1.49109 1.55562 1.22334 1.07695 1.16030 0.78100 0.82710 0.82692 1.90870 1.59031 1.57031 1.32325 1.28004 1.11912 1.03780 0.98930 1.24490 0.93812 0.89229 1.01764 1.70772 1.19191 1.13757 1.07786 1.78797 1.18221 1.24537 1.02949 1.82841 1.37760 1.04267 1.18704 0.91579 0.79887 0.88942 0.93071 0.88059 0.91814 0.89601 0.87710 0.90242 0.89743 0.76727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.43 13.96 55.50 0.77 -24.65 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 3 Si 0.88 19.02 27.74 -169.99 -4.71 14.31 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 7 C -0.30 -8.43 10.16 -14.93 -0.15 -8.58 16 8 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 9 N -0.59 -13.58 5.09 -10.96 -0.06 -13.63 16 10 C 0.45 9.70 7.67 -10.99 -0.08 9.61 16 11 O -0.55 -14.22 15.58 5.55 0.09 -14.14 16 12 C 0.03 0.43 4.07 -4.98 -0.02 0.41 16 13 N -0.49 -6.34 4.80 -218.54 -1.05 -7.39 16 14 C 0.04 0.49 5.57 -1.74 -0.01 0.48 16 15 C 0.11 1.10 5.22 -62.67 -0.33 0.77 16 16 H 0.13 1.25 8.05 -51.93 -0.42 0.83 16 17 C -0.13 -0.95 6.82 -22.11 -0.15 -1.10 16 18 C 0.06 0.50 5.19 -62.32 -0.32 0.17 16 19 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 20 C 0.04 0.32 4.29 -1.68 -0.01 0.31 16 21 N -0.61 -6.10 2.95 -158.26 -0.47 -6.57 16 22 C 0.62 7.16 7.88 -12.64 -0.10 7.06 16 23 O -0.52 -7.47 17.32 5.26 0.09 -7.38 16 24 C -0.29 -2.85 6.69 -35.96 -0.24 -3.09 16 25 C 0.07 0.73 11.55 -17.80 -0.21 0.52 16 26 N -0.25 -2.86 11.54 30.36 0.35 -2.51 16 27 N -0.26 -2.94 12.51 60.35 0.75 -2.18 16 28 S 0.43 3.57 19.88 -107.50 -2.14 1.44 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.37 7.39 5.76 -40.82 -0.24 7.15 16 31 H 0.09 1.10 8.00 -51.93 -0.42 0.69 16 32 H 0.05 0.68 6.18 -51.93 -0.32 0.36 16 33 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.06 0.97 7.40 -51.93 -0.38 0.59 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 37 H 0.08 0.43 7.11 -51.93 -0.37 0.06 16 38 H 0.08 0.69 4.82 -51.93 -0.25 0.44 16 39 H 0.22 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -35.28 336.35 -7.08 -42.36 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -4.06 Total: 7.65 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -1.72 Total: 7.63 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.31 Total: -56.94 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: 0.18 Total: -21.51 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.71 Total: 14.31 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -2.14 Total: 1.44 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.28 -7.08 -42.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481663657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.332 kcal (2) G-P(sol) polarization free energy of solvation -35.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds