Wall clock time and date at job start Tue Mar 31 2020 19:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00176 * 2 1 4 4 H 1.48507 * 109.47076 * 270.00277 * 3 2 1 5 5 H 1.48507 * 109.47041 * 29.99823 * 3 2 1 6 6 H 1.48493 * 109.47322 * 149.99823 * 3 2 1 7 7 C 1.38950 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99965 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00136 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00154 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99610 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99947 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47110 * 179.97438 * 12 10 9 14 14 C 1.48290 * 111.00326 * 78.71875 * 13 12 10 15 15 C 1.55476 * 105.13355 * 122.46383 * 14 13 12 16 16 H 1.09002 * 116.00331 * 159.81379 * 15 14 13 17 17 C 1.57417 * 99.75641 * 32.93322 * 15 14 13 18 18 C 1.49706 * 111.00331 * 196.32055 * 13 12 10 19 19 H 1.09003 * 116.16611 * 75.28024 * 18 13 12 20 20 C 1.56021 * 104.08204 * 306.12337 * 18 13 12 21 21 N 1.47859 * 105.11364 * 288.80013 * 20 18 13 22 22 C 1.34773 * 126.92687 * 181.91973 * 21 20 18 23 23 O 1.21623 * 120.00058 * 180.02562 * 22 21 20 24 24 C 1.47169 * 120.00264 * 0.29057 * 22 21 20 25 25 C 1.38242 * 128.48062 * 179.72460 * 24 22 21 26 26 N 1.31238 * 111.89446 * 180.02562 * 25 24 22 27 27 N 1.27336 * 120.03495 * 359.97438 * 26 25 24 28 28 S 1.56639 * 109.74249 * 359.70274 * 27 26 25 29 29 H 0.96998 * 120.00156 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99489 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47665 * 59.99699 * 12 10 9 32 32 H 1.08997 * 109.47282 * 299.99304 * 12 10 9 33 33 H 1.08998 * 110.32626 * 241.44479 * 14 13 12 34 34 H 1.09003 * 110.31489 * 3.54763 * 14 13 12 35 35 H 1.09001 * 112.52374 * 191.54274 * 17 15 14 36 36 H 1.09010 * 112.30636 * 64.03995 * 17 15 14 37 37 H 1.09002 * 110.31114 * 169.88810 * 20 18 13 38 38 H 1.09001 * 110.31654 * 47.71349 * 20 18 13 39 39 H 1.08001 * 124.05369 * 0.04523 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4472 -3.4209 0.0011 12 6 5.5606 -2.3705 0.0022 13 7 6.0503 -3.7555 0.0026 14 6 5.9732 -4.3469 -1.3551 15 6 7.4268 -4.7850 -1.6901 16 1 7.5314 -5.5332 -2.4759 17 6 7.9253 -5.1792 -0.2499 18 6 7.4934 -3.8143 0.3965 19 1 7.7086 -3.6745 1.4559 20 6 8.1958 -2.8271 -0.5867 21 7 8.1615 -3.5028 -1.9014 22 6 8.6833 -3.0498 -3.0585 23 8 8.5814 -3.7134 -4.0726 24 6 9.3817 -1.7548 -3.0936 25 6 9.9817 -1.1301 -4.1710 26 7 10.5127 0.0221 -3.8351 27 7 10.4336 0.4340 -2.6328 28 16 9.6524 -0.6108 -1.7659 29 1 -0.4850 0.8400 -0.0004 30 1 3.8648 -0.3633 0.0007 31 1 5.9234 -1.8571 0.8926 32 1 5.9247 -1.8564 -0.8873 33 1 5.3075 -5.2100 -1.3549 34 1 5.6274 -3.6029 -2.0728 35 1 9.0034 -5.3346 -0.2092 36 1 7.3746 -6.0254 0.1613 37 1 9.2264 -2.6539 -0.2769 38 1 7.6498 -1.8848 -0.6311 39 1 10.0099 -1.5408 -5.1695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481663657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:51 Heat of formation + Delta-G solvation = 40.156020 kcal Electronic energy + Delta-G solvation = -27034.669339 eV Core-core repulsion = 23106.024855 eV Total energy + Delta-G solvation = -3928.644484 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.45957 -41.87936 -40.20877 -39.50658 -36.05805 -35.16789 -33.77028 -33.42007 -32.11604 -30.96266 -28.83149 -28.20643 -26.30176 -25.73674 -24.35109 -22.15011 -21.74073 -21.30635 -20.65328 -20.38513 -19.58911 -18.43303 -18.09805 -17.66334 -17.19114 -16.84897 -16.71452 -16.33266 -16.14353 -15.78657 -15.35375 -15.16293 -14.87911 -14.46996 -14.19586 -14.00695 -13.91361 -13.78968 -13.59410 -13.15094 -13.06543 -12.99868 -12.64333 -12.45839 -12.41253 -12.20104 -12.12978 -11.98155 -11.57483 -11.50176 -11.24624 -11.18929 -10.95054 -10.45515 -10.23540 -9.99053 -9.22472 -8.40896 -6.01368 -1.42036 -0.30814 0.37389 0.81002 1.27503 1.33921 1.42653 1.47332 1.73845 1.98415 2.22138 2.51619 2.84419 3.10294 3.15311 3.17552 3.38899 3.51424 3.57899 3.63350 3.91371 4.07053 4.09660 4.23088 4.32990 4.42789 4.45284 4.51174 4.62367 4.73772 4.94198 4.96380 5.04765 5.14508 5.52499 5.74453 5.86135 5.99261 6.14231 6.51592 6.60649 6.69786 6.90165 7.41600 7.99931 8.76987 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011293 B = 0.003938 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.825671 B = 7107.908662 C = 8698.615481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.015 4.015 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.224 1.224 7 C -0.325 4.325 8 H 0.054 0.946 9 N -0.595 5.595 10 C 0.450 3.550 11 O -0.605 6.605 12 C 0.044 3.956 13 N -0.510 5.510 14 C 0.039 3.961 15 C 0.114 3.886 16 H 0.131 0.869 17 C -0.115 4.115 18 C 0.069 3.931 19 H 0.178 0.822 20 C 0.034 3.966 21 N -0.610 5.610 22 C 0.618 3.382 23 O -0.556 6.556 24 C -0.305 4.305 25 C 0.075 3.925 26 N -0.276 5.276 27 N -0.297 5.297 28 S 0.512 5.488 29 H 0.278 0.722 30 H 0.388 0.612 31 H 0.135 0.865 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.033 0.967 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.301 -2.443 1.095 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.213 4.213 3 Si 0.779 3.221 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.147 1.147 7 C -0.455 4.455 8 H 0.072 0.928 9 N -0.238 5.238 10 C 0.238 3.762 11 O -0.489 6.489 12 C -0.087 4.087 13 N -0.234 5.234 14 C -0.090 4.090 15 C 0.011 3.989 16 H 0.149 0.851 17 C -0.153 4.153 18 C -0.038 4.038 19 H 0.195 0.805 20 C -0.090 4.090 21 N -0.344 5.344 22 C 0.405 3.595 23 O -0.436 6.436 24 C -0.445 4.445 25 C -0.093 4.093 26 N -0.139 5.139 27 N -0.278 5.278 28 S 0.648 5.352 29 H 0.088 0.912 30 H 0.223 0.777 31 H 0.153 0.847 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.104 0.896 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 26.894 -2.072 1.963 27.045 hybrid contribution -0.597 0.520 -2.182 2.321 sum 26.297 -1.552 -0.220 26.343 Atomic orbital electron populations 1.69801 1.08168 1.29140 1.50610 1.26074 0.96405 1.02591 0.96245 0.85454 0.79957 0.77003 0.79696 1.18805 1.20022 1.14674 1.18981 0.81596 0.94795 1.50109 0.92754 1.42045 1.05731 1.07616 1.68366 1.20993 0.90977 0.83235 0.80998 1.90551 1.71308 1.32726 1.54272 1.22102 0.90395 0.91888 1.04350 1.64477 1.18594 1.16370 1.23971 1.23458 0.96478 0.99992 0.89100 1.24238 0.89674 0.85260 0.99710 0.85097 1.24004 1.03098 0.97313 0.90839 1.25121 0.83972 0.94200 1.00492 0.80495 1.23893 1.04441 0.97860 0.82818 1.49162 1.54595 1.22412 1.08204 1.16199 0.77932 0.82906 0.82504 1.90848 1.60713 1.58275 1.33743 1.27922 1.12474 1.03778 1.00375 1.24733 0.93220 0.88831 1.02518 1.70828 1.20330 1.14498 1.08215 1.78560 1.19572 1.26205 1.03448 1.82369 1.34994 1.01726 1.16135 0.91244 0.77663 0.84706 0.91121 0.90488 0.94823 0.86791 0.87676 0.86691 0.89575 0.75599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.29 13.96 21.66 0.30 -55.99 16 2 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 3 Si 0.96 38.04 27.74 68.60 1.90 39.94 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 5 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.22 -7.17 6.52 99.48 0.65 -6.52 16 7 C -0.33 -18.79 10.16 84.04 0.85 -17.93 16 8 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 9 N -0.60 -27.04 5.09 -306.99 -1.56 -28.61 16 10 C 0.45 19.24 7.67 87.66 0.67 19.91 16 11 O -0.61 -32.42 15.58 -3.07 -0.05 -32.47 16 12 C 0.04 1.15 4.07 85.56 0.35 1.50 16 13 N -0.51 -12.16 4.80 -845.33 -4.06 -16.22 16 14 C 0.04 1.01 5.57 86.89 0.48 1.49 16 15 C 0.11 2.04 5.22 46.86 0.24 2.29 16 16 H 0.13 2.41 8.05 -2.39 -0.02 2.39 16 17 C -0.11 -1.25 6.82 33.59 0.23 -1.02 16 18 C 0.07 0.81 5.19 46.85 0.24 1.05 16 19 H 0.18 0.94 8.14 -2.39 -0.02 0.92 16 20 C 0.03 0.36 4.29 87.17 0.37 0.74 16 21 N -0.61 -10.48 2.95 -772.85 -2.28 -12.76 16 22 C 0.62 13.21 7.88 86.59 0.68 13.89 16 23 O -0.56 -15.92 17.32 -4.11 -0.07 -15.99 16 24 C -0.30 -5.36 6.69 24.62 0.16 -5.20 16 25 C 0.07 1.36 11.55 84.78 0.98 2.34 16 26 N -0.28 -5.84 11.54 -57.87 -0.67 -6.51 16 27 N -0.30 -5.82 12.51 37.02 0.46 -5.36 16 28 S 0.51 6.50 19.88 -56.49 -1.12 5.38 16 29 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 30 H 0.39 14.39 5.76 -92.71 -0.53 13.85 16 31 H 0.14 2.44 8.00 -2.39 -0.02 2.42 16 32 H 0.07 1.62 6.18 -2.39 -0.01 1.61 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.03 1.05 7.40 -2.39 -0.02 1.03 16 35 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.10 1.22 8.14 -2.38 -0.02 1.21 16 37 H 0.12 0.50 7.11 -2.39 -0.02 0.48 16 38 H 0.09 0.93 4.82 -2.39 -0.01 0.92 16 39 H 0.23 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -85.75 336.35 -0.87 -86.62 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.54 Total: 23.24 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 5.74 Total: 18.72 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -7.81 Total: -125.44 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -0.12 Total: -48.46 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.90 Total: 39.94 kcal Atomic # 16 Polarization: 6.50 SS G_CDS: -1.12 Total: 5.38 kcal Total: -85.75 -0.87 -86.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481663657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.775 kcal (2) G-P(sol) polarization free energy of solvation -85.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds