Wall clock time and date at job start Tue Mar 31 2020 19:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46627 * 221.94619 * 3 2 1 5 5 C 1.34776 * 120.00051 * 274.43065 * 4 3 2 6 6 O 1.21590 * 120.00020 * 185.16104 * 5 4 3 7 7 C 1.47522 * 120.00203 * 5.15755 * 5 4 3 8 8 C 1.36777 * 126.92962 * 183.44814 * 7 5 4 9 9 C 1.41410 * 103.83924 * 179.97438 * 8 7 5 10 10 Cl 1.73596 * 126.72680 * 179.97438 * 9 8 7 11 11 N 1.30225 * 106.54842 * 0.02562 * 9 8 7 12 12 O 1.20890 * 111.95863 * 359.72331 * 11 9 8 13 13 C 1.46502 * 119.99978 * 94.43477 * 4 3 2 14 14 C 1.53072 * 109.45653 * 119.78710 * 13 4 3 15 15 C 1.53185 * 109.29875 * 181.24214 * 14 13 4 16 16 N 1.46930 * 108.89197 * 305.58041 * 15 14 13 17 17 C 1.36944 * 120.62467 * 233.51258 * 16 15 14 18 18 H 1.08002 * 119.99366 * 149.72719 * 17 16 15 19 19 C 1.38804 * 120.00264 * 329.72378 * 17 16 15 20 20 N 1.31619 * 119.99713 * 159.39942 * 19 17 16 21 21 Si 1.86798 * 120.00142 * 339.40747 * 19 17 16 22 22 H 1.48494 * 109.47552 * 95.30754 * 21 19 17 23 23 H 1.48501 * 109.46803 * 215.30874 * 21 19 17 24 24 H 1.48503 * 109.47005 * 335.30337 * 21 19 17 25 25 C 1.46920 * 118.74077 * 53.53540 * 16 15 14 26 26 C 1.53043 * 109.45793 * 239.99682 * 13 4 3 27 27 H 4.40641 * 5.51487 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.46854 * 101.95420 * 3 2 1 29 29 H 1.08990 * 109.47238 * 341.94479 * 3 2 1 30 30 H 1.08003 * 128.08124 * 359.97438 * 8 7 5 31 31 H 1.09001 * 109.46156 * 359.96809 * 13 4 3 32 32 H 1.08999 * 109.39239 * 61.36034 * 14 13 4 33 33 H 1.09002 * 109.62036 * 301.25857 * 14 13 4 34 34 H 1.09002 * 109.59277 * 185.71745 * 15 14 13 35 35 H 1.09000 * 109.58491 * 65.43372 * 15 14 13 36 36 H 0.97010 * 119.99734 * 180.02562 * 20 19 17 37 37 H 1.08992 * 109.59131 * 66.18127 * 25 16 15 38 38 H 1.09001 * 109.58457 * 186.46558 * 25 16 15 39 39 H 1.09004 * 109.50173 * 58.65968 * 26 13 4 40 40 H 1.09006 * 109.49982 * 298.56261 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.0282 0.9233 5 6 3.2728 2.3011 0.5025 6 8 3.7653 3.1343 1.2385 7 6 2.8275 2.6834 -0.8509 8 6 2.9593 3.9089 -1.4438 9 6 2.3745 3.7322 -2.7192 10 17 2.2245 4.9295 -3.9672 11 7 1.9696 2.4957 -2.7735 12 8 2.2140 1.8948 -1.7534 13 6 3.4706 0.6722 2.3039 14 6 4.9459 0.9853 2.5658 15 6 5.3018 0.5830 4.0004 16 7 4.3689 1.2420 4.9247 17 6 4.8364 1.9946 5.9689 18 1 4.2593 2.8325 6.3314 19 6 6.0517 1.6806 6.5614 20 7 6.6975 2.5899 7.2602 21 14 6.7707 -0.0325 6.3669 22 1 7.7314 -0.0406 5.2347 23 1 7.4746 -0.4186 7.6162 24 1 5.6775 -1.0002 6.0954 25 6 2.9252 1.0776 4.7076 26 6 2.5946 1.4777 3.2663 27 1 -1.0502 -0.0001 -0.0003 28 1 3.0092 0.2137 -1.0054 29 1 3.0098 -0.9761 0.3185 30 1 3.4057 4.8028 -1.0337 31 1 3.2948 -0.3925 2.4576 32 1 5.1180 2.0535 2.4342 33 1 5.5683 0.4272 1.8664 34 1 6.3214 0.8960 4.2255 35 1 5.2196 -0.4986 4.1076 36 1 7.5471 2.3706 7.6740 37 1 2.6472 0.0365 4.8708 38 1 2.3766 1.7152 5.4009 39 1 1.5441 1.2697 3.0628 40 1 2.7882 2.5418 3.1305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500053965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:29 Heat of formation + Delta-G solvation = 126.720960 kcal Electronic energy + Delta-G solvation = -27223.965193 eV Core-core repulsion = 23264.737990 eV Total energy + Delta-G solvation = -3959.227204 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.55384 -40.46246 -37.55571 -37.49857 -36.21210 -34.07760 -33.43595 -32.61230 -31.96740 -30.41422 -30.28582 -27.32779 -25.76295 -24.02532 -23.81359 -22.79361 -22.19886 -20.81168 -19.81190 -18.88233 -18.35432 -17.61861 -16.97512 -16.74641 -16.19121 -15.44203 -15.37803 -15.02250 -14.39058 -14.24152 -14.16050 -13.88006 -13.67492 -13.42791 -13.19313 -13.10241 -13.06606 -12.79100 -12.37623 -11.99720 -11.78978 -11.51309 -11.30384 -10.83442 -10.77005 -10.56764 -10.51778 -10.44075 -10.32308 -10.17835 -10.13026 -9.93670 -9.67140 -9.49362 -8.86896 -8.58805 -6.92202 -5.92519 -3.29966 0.37035 1.02054 1.40139 2.08222 2.35050 2.64610 2.73447 3.14239 3.33973 3.49195 3.52089 3.79023 4.13192 4.29400 4.32870 4.55430 4.59503 4.84445 4.96675 5.11833 5.18194 5.29557 5.31030 5.41861 5.53699 5.71034 5.82492 5.88197 6.06474 6.14781 6.24054 6.36889 6.57933 6.63829 6.65960 6.81914 6.85741 7.16819 7.40473 7.42168 7.79625 8.01798 8.37439 8.97304 9.74615 10.12735 11.23580 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.003077 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.452084 B = 9097.236127 C = 9889.680994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.208 4.208 3 C 0.213 3.787 4 N -0.593 5.593 5 C 0.601 3.399 6 O -0.477 6.477 7 C -0.064 4.064 8 C -0.139 4.139 9 C 0.052 3.948 10 Cl 0.031 6.969 11 N -0.332 5.332 12 O 0.139 5.861 13 C 0.159 3.841 14 C -0.152 4.152 15 C 0.133 3.867 16 N -0.603 5.603 17 C -0.258 4.258 18 H 0.084 0.916 19 C 0.025 3.975 20 N -0.907 5.907 21 Si 0.880 3.120 22 H -0.288 1.288 23 H -0.303 1.303 24 H -0.269 1.269 25 C 0.154 3.846 26 C -0.149 4.149 27 H 0.217 0.783 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.195 0.805 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.024 0.976 36 H 0.262 0.738 37 H 0.022 0.978 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.632 -3.283 -21.600 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.210 4.210 3 C 0.090 3.910 4 N -0.325 5.325 5 C 0.385 3.615 6 O -0.349 6.349 7 C -0.130 4.130 8 C -0.162 4.162 9 C -0.131 4.131 10 Cl 0.059 6.941 11 N -0.034 5.034 12 O 0.063 5.937 13 C 0.058 3.942 14 C -0.192 4.192 15 C 0.007 3.993 16 N -0.326 5.326 17 C -0.387 4.387 18 H 0.101 0.899 19 C -0.174 4.174 20 N -0.550 5.550 21 Si 0.710 3.290 22 H -0.216 1.216 23 H -0.231 1.231 24 H -0.194 1.194 25 C 0.027 3.973 26 C -0.189 4.189 27 H 0.234 0.766 28 H 0.121 0.879 29 H 0.132 0.868 30 H 0.212 0.788 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.811 -3.365 -22.099 24.831 hybrid contribution 0.503 -0.243 -0.017 0.558 sum -10.309 -3.607 -22.116 24.666 Atomic orbital electron populations 1.24929 0.95887 0.99023 0.99589 1.23342 0.94701 1.01674 1.01245 1.18631 0.84282 0.93400 0.94649 1.48246 1.63890 1.06979 1.13348 1.16589 0.79395 0.83166 0.82364 1.90956 1.41916 1.49615 1.52455 1.24470 1.02467 0.91574 0.94455 1.22779 1.02164 0.99748 0.91552 1.24044 1.04284 0.91348 0.93389 1.98426 1.96671 1.49777 1.49246 1.73830 1.17524 1.06822 1.05202 1.85245 1.56356 1.34931 1.17193 1.21316 0.96395 0.99326 0.77129 1.22558 0.93351 1.04459 0.98822 1.21271 0.95304 0.94996 0.87730 1.44334 0.99836 1.58966 1.29495 1.18891 1.04961 1.06955 1.07868 0.89884 1.25343 0.97369 0.97435 0.97224 1.69854 1.15239 1.32595 1.37277 0.86925 0.78719 0.87412 0.75955 1.21596 1.23098 1.19419 1.20862 0.85772 0.97904 0.92736 1.22456 0.97295 1.02258 0.96892 0.76644 0.87866 0.86847 0.78757 0.89401 0.89017 0.92687 0.90769 0.95848 0.92803 0.96005 0.91496 0.92720 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 19.25 29.55 0.57 -1.08 16 2 C -0.21 -2.13 12.25 -37.12 -0.45 -2.59 16 3 C 0.21 1.98 5.50 -6.83 -0.04 1.95 16 4 N -0.59 -7.39 2.39 -170.58 -0.41 -7.80 16 5 C 0.60 8.31 7.04 -12.48 -0.09 8.22 16 6 O -0.48 -8.24 13.19 5.29 0.07 -8.17 16 7 C -0.06 -0.75 6.79 -36.33 -0.25 -1.00 16 8 C -0.14 -1.49 10.96 -38.90 -0.43 -1.91 16 9 C 0.05 0.56 7.97 -17.03 -0.14 0.42 16 10 Cl 0.03 0.27 29.33 -51.86 -1.52 -1.25 16 11 N -0.33 -3.83 12.05 32.82 0.40 -3.44 16 12 O 0.14 1.54 7.15 15.55 0.11 1.65 16 13 C 0.16 2.34 2.50 -67.87 -0.17 2.17 16 14 C -0.15 -2.65 5.28 -26.60 -0.14 -2.79 16 15 C 0.13 2.83 4.22 -3.71 -0.02 2.81 16 16 N -0.60 -14.17 2.72 -172.33 -0.47 -14.64 16 17 C -0.26 -7.24 10.00 -15.06 -0.15 -7.39 16 18 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 19 C 0.03 0.73 5.20 -17.43 -0.09 0.64 16 20 N -0.91 -27.93 13.97 55.49 0.78 -27.15 16 21 Si 0.88 22.09 24.43 -169.99 -4.15 17.93 16 22 H -0.29 -7.00 6.78 56.52 0.38 -6.61 16 23 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 24 H -0.27 -6.54 6.60 56.52 0.37 -6.17 16 25 C 0.15 2.97 6.52 -3.71 -0.02 2.95 16 26 C -0.15 -2.47 5.27 -26.61 -0.14 -2.61 16 27 H 0.22 1.36 7.80 -54.08 -0.42 0.94 16 28 H 0.10 0.84 5.84 -51.93 -0.30 0.54 16 29 H 0.11 0.81 7.83 -51.93 -0.41 0.41 16 30 H 0.20 1.78 8.06 -52.48 -0.42 1.35 16 31 H 0.09 1.15 7.74 -51.93 -0.40 0.75 16 32 H 0.09 1.84 6.05 -51.93 -0.31 1.52 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.75 4.94 -51.93 -0.26 1.50 16 35 H 0.02 0.48 7.01 -51.93 -0.36 0.11 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.59 6.39 -51.93 -0.33 1.26 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -32.54 344.83 -6.06 -38.60 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.51 Total: -0.72 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -1.55 Total: -0.21 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.29 Total: -53.04 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: 0.18 Total: -6.52 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.15 Total: 17.93 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.54 -6.06 -38.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500053965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.324 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds