Wall clock time and date at job start Tue Mar 31 2020 19:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46627 * 221.94619 * 3 2 1 5 5 C 1.34776 * 120.00051 * 274.43065 * 4 3 2 6 6 O 1.21590 * 120.00020 * 185.16104 * 5 4 3 7 7 C 1.47522 * 120.00203 * 5.15755 * 5 4 3 8 8 C 1.36777 * 126.92962 * 183.44814 * 7 5 4 9 9 C 1.41410 * 103.83924 * 179.97438 * 8 7 5 10 10 Cl 1.73596 * 126.72680 * 179.97438 * 9 8 7 11 11 N 1.30225 * 106.54842 * 0.02562 * 9 8 7 12 12 O 1.20890 * 111.95863 * 359.72331 * 11 9 8 13 13 C 1.46502 * 119.99978 * 94.43477 * 4 3 2 14 14 C 1.53072 * 109.45653 * 119.78710 * 13 4 3 15 15 C 1.53185 * 109.29875 * 181.24214 * 14 13 4 16 16 N 1.46930 * 108.89197 * 305.58041 * 15 14 13 17 17 C 1.36944 * 120.62467 * 233.51258 * 16 15 14 18 18 H 1.08002 * 119.99366 * 149.72719 * 17 16 15 19 19 C 1.38804 * 120.00264 * 329.72378 * 17 16 15 20 20 N 1.31619 * 119.99713 * 159.39942 * 19 17 16 21 21 Si 1.86798 * 120.00142 * 339.40747 * 19 17 16 22 22 H 1.48494 * 109.47552 * 95.30754 * 21 19 17 23 23 H 1.48501 * 109.46803 * 215.30874 * 21 19 17 24 24 H 1.48503 * 109.47005 * 335.30337 * 21 19 17 25 25 C 1.46920 * 118.74077 * 53.53540 * 16 15 14 26 26 C 1.53043 * 109.45793 * 239.99682 * 13 4 3 27 27 H 4.40641 * 5.51487 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.46854 * 101.95420 * 3 2 1 29 29 H 1.08990 * 109.47238 * 341.94479 * 3 2 1 30 30 H 1.08003 * 128.08124 * 359.97438 * 8 7 5 31 31 H 1.09001 * 109.46156 * 359.96809 * 13 4 3 32 32 H 1.08999 * 109.39239 * 61.36034 * 14 13 4 33 33 H 1.09002 * 109.62036 * 301.25857 * 14 13 4 34 34 H 1.09002 * 109.59277 * 185.71745 * 15 14 13 35 35 H 1.09000 * 109.58491 * 65.43372 * 15 14 13 36 36 H 0.97010 * 119.99734 * 180.02562 * 20 19 17 37 37 H 1.08992 * 109.59131 * 66.18127 * 25 16 15 38 38 H 1.09001 * 109.58457 * 186.46558 * 25 16 15 39 39 H 1.09004 * 109.50173 * 58.65968 * 26 13 4 40 40 H 1.09006 * 109.49982 * 298.56261 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.0282 0.9233 5 6 3.2728 2.3011 0.5025 6 8 3.7653 3.1343 1.2385 7 6 2.8275 2.6834 -0.8509 8 6 2.9593 3.9089 -1.4438 9 6 2.3745 3.7322 -2.7192 10 17 2.2245 4.9295 -3.9672 11 7 1.9696 2.4957 -2.7735 12 8 2.2140 1.8948 -1.7534 13 6 3.4706 0.6722 2.3039 14 6 4.9459 0.9853 2.5658 15 6 5.3018 0.5830 4.0004 16 7 4.3689 1.2420 4.9247 17 6 4.8364 1.9946 5.9689 18 1 4.2593 2.8325 6.3314 19 6 6.0517 1.6806 6.5614 20 7 6.6975 2.5899 7.2602 21 14 6.7707 -0.0325 6.3669 22 1 7.7314 -0.0406 5.2347 23 1 7.4746 -0.4186 7.6162 24 1 5.6775 -1.0002 6.0954 25 6 2.9252 1.0776 4.7076 26 6 2.5946 1.4777 3.2663 27 1 -1.0502 -0.0001 -0.0003 28 1 3.0092 0.2137 -1.0054 29 1 3.0098 -0.9761 0.3185 30 1 3.4057 4.8028 -1.0337 31 1 3.2948 -0.3925 2.4576 32 1 5.1180 2.0535 2.4342 33 1 5.5683 0.4272 1.8664 34 1 6.3214 0.8960 4.2255 35 1 5.2196 -0.4986 4.1076 36 1 7.5471 2.3706 7.6740 37 1 2.6472 0.0365 4.8708 38 1 2.3766 1.7152 5.4009 39 1 1.5441 1.2697 3.0628 40 1 2.7882 2.5418 3.1305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500053965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:29 Heat of formation + Delta-G solvation = 105.955577 kcal Electronic energy + Delta-G solvation = -27224.865648 eV Core-core repulsion = 23264.737990 eV Total energy + Delta-G solvation = -3960.127658 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.42034 -41.57575 -38.98090 -38.30603 -37.32038 -34.95115 -34.87943 -33.57845 -33.38468 -31.91020 -31.82185 -28.20290 -27.26917 -25.25735 -24.83890 -24.28419 -23.55972 -22.04863 -21.06440 -19.80545 -19.29095 -18.85720 -18.32952 -17.72729 -17.50045 -16.87532 -16.37160 -16.32283 -15.83675 -15.36256 -15.25571 -15.10132 -14.90541 -14.77029 -14.54045 -14.25757 -14.11392 -13.91963 -13.66639 -13.64341 -13.37172 -12.79267 -12.53347 -12.27584 -12.22097 -12.07730 -11.79576 -11.62216 -11.51023 -11.42745 -11.29892 -11.12284 -10.96893 -10.94310 -10.68547 -9.99556 -8.86226 -8.13825 -5.47821 -0.54403 0.22927 0.54830 1.13598 1.34970 1.45143 1.51775 1.55689 1.71408 1.96687 2.30105 2.46417 2.92742 3.07923 3.36607 3.41918 3.46023 3.53877 3.72016 3.87994 3.99504 4.10172 4.29334 4.38670 4.48252 4.54008 4.57793 4.64712 4.68915 4.81782 4.99398 5.00889 5.10854 5.11490 5.31331 5.37471 5.57398 5.91640 6.05345 6.16512 6.52924 6.72775 6.78384 6.96672 7.65899 8.06024 9.06628 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.003077 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.452084 B = 9097.236127 C = 9889.680994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.234 4.234 3 C 0.209 3.791 4 N -0.586 5.586 5 C 0.602 3.398 6 O -0.521 6.521 7 C -0.070 4.070 8 C -0.134 4.134 9 C 0.051 3.949 10 Cl 0.046 6.954 11 N -0.341 5.341 12 O 0.148 5.852 13 C 0.166 3.834 14 C -0.143 4.143 15 C 0.128 3.872 16 N -0.619 5.619 17 C -0.250 4.250 18 H 0.040 0.960 19 C -0.037 4.037 20 N -0.961 5.961 21 Si 0.951 3.049 22 H -0.275 1.275 23 H -0.312 1.312 24 H -0.248 1.248 25 C 0.150 3.850 26 C -0.138 4.138 27 H 0.239 0.761 28 H 0.115 0.885 29 H 0.144 0.856 30 H 0.206 0.794 31 H 0.122 0.878 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.261 0.739 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.768 -6.124 -24.239 27.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.235 4.235 3 C 0.089 3.911 4 N -0.316 5.316 5 C 0.387 3.613 6 O -0.396 6.396 7 C -0.136 4.136 8 C -0.157 4.157 9 C -0.132 4.132 10 Cl 0.074 6.926 11 N -0.042 5.042 12 O 0.071 5.929 13 C 0.065 3.935 14 C -0.183 4.183 15 C 0.002 3.998 16 N -0.344 5.344 17 C -0.380 4.380 18 H 0.058 0.942 19 C -0.232 4.232 20 N -0.607 5.607 21 Si 0.779 3.221 22 H -0.201 1.201 23 H -0.241 1.241 24 H -0.172 1.172 25 C 0.025 3.975 26 C -0.177 4.177 27 H 0.255 0.745 28 H 0.133 0.867 29 H 0.161 0.839 30 H 0.223 0.777 31 H 0.140 0.860 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.001 -6.248 -24.815 28.264 hybrid contribution 0.724 0.759 0.711 1.267 sum -11.277 -5.489 -24.104 27.171 Atomic orbital electron populations 1.25647 0.96803 0.98130 0.98669 1.23607 0.95262 1.02516 1.02115 1.18942 0.84092 0.93586 0.94503 1.48135 1.63286 1.07235 1.12913 1.16774 0.78675 0.83198 0.82652 1.90954 1.43921 1.50916 1.53850 1.24101 1.03465 0.92040 0.94005 1.22991 1.01382 0.99861 0.91476 1.24149 1.03886 0.91416 0.93742 1.98435 1.96560 1.49065 1.48504 1.73805 1.17765 1.07267 1.05334 1.85245 1.56171 1.34610 1.16892 1.21132 0.93925 1.00562 0.77894 1.22371 0.96086 1.02826 0.96998 1.21345 0.93347 0.95787 0.89277 1.44449 1.02001 1.58934 1.28974 1.18783 1.04367 1.06074 1.08779 0.94222 1.26050 0.98154 1.01349 0.97627 1.70009 1.16097 1.34827 1.39738 0.85782 0.78490 0.82110 0.75732 1.20104 1.24115 1.17174 1.21014 0.83187 0.99068 0.94229 1.22258 0.99156 1.00631 0.95682 0.74482 0.86748 0.83890 0.77741 0.86046 0.92277 0.89588 0.93671 0.93448 0.93012 0.93271 0.93105 0.90303 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 19.25 74.32 1.43 -1.27 16 2 C -0.23 -3.97 12.25 31.13 0.38 -3.59 16 3 C 0.21 3.11 5.50 84.57 0.46 3.57 16 4 N -0.59 -12.96 2.39 -811.86 -1.94 -14.91 16 5 C 0.60 15.89 7.04 86.69 0.61 16.50 16 6 O -0.52 -18.18 13.19 -4.00 -0.05 -18.23 16 7 C -0.07 -1.54 6.79 24.38 0.17 -1.38 16 8 C -0.13 -2.70 10.96 22.71 0.25 -2.45 16 9 C 0.05 0.99 7.97 85.71 0.68 1.67 16 10 Cl 0.05 0.74 29.33 -2.72 -0.08 0.67 16 11 N -0.34 -7.16 12.05 -51.03 -0.61 -7.78 16 12 O 0.15 2.94 7.15 65.82 0.47 3.41 16 13 C 0.17 4.38 2.50 45.03 0.11 4.50 16 14 C -0.14 -4.69 5.28 30.68 0.16 -4.53 16 15 C 0.13 5.18 4.22 86.36 0.36 5.55 16 16 N -0.62 -28.98 2.72 -699.12 -1.90 -30.89 16 17 C -0.25 -14.54 10.00 84.03 0.84 -13.70 16 18 H 0.04 2.58 8.06 -2.91 -0.02 2.55 16 19 C -0.04 -2.21 5.20 84.86 0.44 -1.77 16 20 N -0.96 -61.76 13.97 21.65 0.30 -61.46 16 21 Si 0.95 45.95 24.43 68.60 1.68 47.62 16 22 H -0.27 -12.53 6.78 99.48 0.67 -11.85 16 23 H -0.31 -15.43 7.11 99.48 0.71 -14.73 16 24 H -0.25 -10.99 6.60 99.48 0.66 -10.34 16 25 C 0.15 5.64 6.52 86.36 0.56 6.21 16 26 C -0.14 -4.35 5.27 30.67 0.16 -4.19 16 27 H 0.24 2.19 7.80 -4.41 -0.03 2.16 16 28 H 0.11 1.47 5.84 -2.39 -0.01 1.46 16 29 H 0.14 1.29 7.83 -2.39 -0.02 1.28 16 30 H 0.21 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.12 2.49 7.74 -2.39 -0.02 2.47 16 32 H 0.06 2.37 6.05 -2.39 -0.01 2.36 16 33 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.04 2.09 4.94 -2.39 -0.01 2.08 16 35 H 0.05 1.72 7.01 -2.39 -0.02 1.71 16 36 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 39 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.05 1.95 6.39 -2.38 -0.02 1.93 16 Total: -1.00 -74.26 344.83 5.48 -68.78 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.00 Total: 7.66 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 6.63 Total: 5.12 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -4.16 Total: -115.02 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: 0.42 Total: -14.82 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.68 Total: 47.62 kcal Atomic # 17 Polarization: 0.74 SS G_CDS: -0.08 Total: 0.67 kcal Total: -74.26 5.48 -68.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500053965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.736 kcal (2) G-P(sol) polarization free energy of solvation -74.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds