Wall clock time and date at job start Tue Mar 31 2020 20:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00306 * 2 1 4 4 C 1.53002 * 109.47348 * 270.00509 * 3 2 1 5 5 H 1.08997 * 109.47109 * 59.99559 * 4 3 2 6 6 O 1.42900 * 109.46661 * 299.99730 * 4 3 2 7 7 C 1.52995 * 109.46995 * 179.97438 * 4 3 2 8 8 N 1.46504 * 109.47057 * 184.99933 * 7 4 3 9 9 C 1.36932 * 119.99808 * 179.72560 * 8 7 4 10 10 H 1.08002 * 120.00268 * 0.27744 * 9 8 7 11 11 C 1.38818 * 119.99918 * 180.27314 * 9 8 7 12 12 N 1.31618 * 120.00169 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99906 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47021 * 89.99464 * 13 11 9 15 15 H 1.48491 * 109.47235 * 209.99667 * 13 11 9 16 16 H 1.48503 * 109.46854 * 329.99960 * 13 11 9 17 17 C 1.34785 * 120.00018 * 180.02562 * 2 1 3 18 18 O 1.21582 * 120.00033 * 176.12965 * 17 2 1 19 19 C 1.47510 * 119.99739 * 356.13033 * 17 2 1 20 20 C 1.36821 * 126.94445 * 185.79936 * 19 17 2 21 21 C 1.41259 * 103.84958 * 179.97438 * 20 19 17 22 22 C 1.50700 * 126.70778 * 180.09695 * 21 20 19 23 23 F 1.39895 * 109.47458 * 185.25776 * 22 21 20 24 24 F 1.39901 * 109.47226 * 305.26301 * 22 21 20 25 25 F 1.39906 * 109.46652 * 65.26059 * 22 21 20 26 26 N 1.30126 * 106.58871 * 0.33608 * 21 20 19 27 27 O 1.20887 * 111.98093 * 359.78327 * 26 21 20 28 28 H 1.08997 * 109.47615 * 95.62130 * 1 2 3 29 29 H 1.08997 * 109.46959 * 215.62150 * 1 2 3 30 30 H 1.09005 * 109.46790 * 335.61493 * 1 2 3 31 31 H 1.08998 * 109.46933 * 149.99940 * 3 2 1 32 32 H 1.09003 * 109.46509 * 30.00554 * 3 2 1 33 33 H 0.96692 * 114.00368 * 299.99861 * 6 4 3 34 34 H 1.09005 * 109.47356 * 65.00357 * 7 4 3 35 35 H 1.09002 * 109.47420 * 304.99642 * 7 4 3 36 36 H 0.96998 * 119.99973 * 0.02562 * 8 7 4 37 37 H 0.97003 * 119.99809 * 179.97438 * 12 11 9 38 38 H 1.08008 * 128.07567 * 0.03511 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5001 1.8408 -1.9563 6 8 3.2248 0.7145 -2.1161 7 6 3.2170 3.0357 -1.4424 8 7 3.3568 3.5189 -2.8184 9 6 4.0058 4.6988 -3.0670 10 1 4.4184 5.2709 -2.2493 11 6 4.1334 5.1594 -4.3703 12 7 4.7567 6.2938 -4.6093 13 14 3.4191 4.1701 -5.7847 14 1 2.0198 4.6007 -6.0330 15 1 4.2311 4.3970 -7.0071 16 1 3.4386 2.7262 -5.4383 17 6 2.1389 -1.1673 -0.0005 18 8 3.3527 -1.1684 -0.0716 19 6 1.4038 -2.4433 0.0851 20 6 1.9416 -3.6956 0.2062 21 6 0.8139 -4.5455 0.2451 22 6 0.8216 -6.0469 0.3738 23 9 -0.4852 -6.5319 0.2548 24 9 1.6172 -6.5976 -0.6366 25 9 1.3399 -6.4052 1.6229 26 7 -0.2327 -3.7790 0.1429 27 8 0.0684 -2.6116 0.0531 28 1 -0.3634 -0.1007 -1.0227 29 1 -0.3633 -0.8354 0.5985 30 1 -0.3633 0.9361 0.4243 31 1 3.1499 1.1383 0.5138 32 1 1.6085 2.0283 0.5140 33 1 4.0872 0.5460 -1.7127 34 1 4.2053 2.8851 -1.0081 35 1 2.6693 3.7711 -0.8530 36 1 2.9860 3.0052 -3.5528 37 1 4.8461 6.6154 -5.5201 38 1 2.9847 -3.9702 0.2604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507486733.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:15 Heat of formation + Delta-G solvation = -136.797150 kcal Electronic energy + Delta-G solvation = -29041.654335 eV Core-core repulsion = 24088.434223 eV Total energy + Delta-G solvation = -4953.220112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.79541 -48.30901 -48.29555 -45.98810 -40.33987 -37.62404 -35.96896 -35.12986 -34.20244 -32.91531 -31.50589 -29.92103 -27.94443 -27.30491 -26.37599 -24.23901 -23.54431 -22.30127 -21.36031 -21.00026 -19.35138 -19.09996 -18.72903 -18.46642 -17.75348 -17.70935 -16.95595 -16.63099 -16.22461 -15.43271 -15.14699 -15.11227 -15.03601 -14.69575 -14.67276 -14.50967 -14.41202 -14.40262 -14.13481 -13.70372 -13.50502 -13.29452 -13.17955 -12.74357 -12.64875 -12.43440 -12.33568 -11.73529 -11.59772 -11.29135 -11.00827 -10.86839 -10.70215 -10.50638 -10.21397 -9.91879 -9.60719 -8.94343 -8.89201 -7.26353 -5.78644 -3.14571 0.07463 0.86016 1.57880 1.86914 2.50259 2.50646 2.74851 3.08436 3.39087 3.46666 3.46958 3.65240 3.81732 3.97997 4.06991 4.34286 4.55477 4.59870 4.72075 4.74529 4.95928 5.02152 5.11559 5.36077 5.40393 5.45738 5.51433 5.73175 5.81466 6.00141 6.37626 6.54226 6.73372 7.03447 7.51028 7.92731 8.00176 8.40064 9.19621 9.91936 10.11545 11.39387 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.024165 B = 0.002235 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.445962 B =12525.513336 C =12854.140760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.591 5.591 3 C 0.085 3.915 4 C 0.080 3.920 5 H 0.098 0.902 6 O -0.552 6.552 7 C 0.131 3.869 8 N -0.749 5.749 9 C -0.247 4.247 10 H 0.089 0.911 11 C 0.006 3.994 12 N -0.933 5.933 13 Si 0.883 3.117 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.272 1.272 17 C 0.606 3.394 18 O -0.496 6.496 19 C -0.059 4.059 20 C -0.113 4.113 21 C -0.086 4.086 22 C 0.560 3.440 23 F -0.162 7.162 24 F -0.159 7.159 25 F -0.161 7.161 26 N -0.294 5.294 27 O 0.154 5.846 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.378 0.622 34 H 0.031 0.969 35 H 0.035 0.965 36 H 0.366 0.634 37 H 0.260 0.740 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.457 -23.795 15.257 30.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.323 5.323 3 C -0.037 4.037 4 C 0.019 3.981 5 H 0.116 0.884 6 O -0.357 6.357 7 C 0.002 3.998 8 N -0.395 5.395 9 C -0.377 4.377 10 H 0.107 0.893 11 C -0.190 4.190 12 N -0.581 5.581 13 Si 0.713 3.287 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.198 1.198 17 C 0.390 3.610 18 O -0.370 6.370 19 C -0.125 4.125 20 C -0.135 4.135 21 C -0.244 4.244 22 C 0.505 3.495 23 F -0.143 7.143 24 F -0.141 7.141 25 F -0.143 7.143 26 N 0.015 4.985 27 O 0.069 5.931 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.226 0.774 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.199 0.801 37 H 0.070 0.930 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -12.512 -23.934 14.858 30.824 hybrid contribution 0.626 -0.803 -0.713 1.243 sum -11.886 -24.737 14.145 30.875 Atomic orbital electron populations 1.22167 0.78308 1.04019 1.03243 1.47589 1.07640 1.05608 1.71464 1.22462 0.98561 0.83566 0.99144 1.22579 0.95962 0.88553 0.90968 0.88366 1.86531 1.33384 1.58884 1.56936 1.21208 0.97438 0.92291 0.88849 1.42578 1.69542 1.25516 1.01903 1.19036 1.28502 0.96166 0.94011 0.89275 1.24670 1.00331 0.97014 0.97010 1.69705 1.47242 1.21279 1.19885 0.86548 0.78797 0.80354 0.82977 1.21127 1.21726 1.19824 1.16376 0.86016 0.80591 0.77996 1.90878 1.11684 1.85198 1.49257 1.24437 0.82677 0.97849 1.07494 1.22679 1.01471 0.89001 1.00389 1.23401 0.91935 0.96261 1.12763 1.16591 0.74551 0.83750 0.74631 1.93268 1.36225 1.89179 1.95627 1.93287 1.73980 1.86594 1.60212 1.93280 1.86785 1.92582 1.41610 1.73811 1.23098 0.89945 1.11695 1.85228 1.23317 1.19893 1.64651 0.91291 0.90414 0.89399 0.88750 0.88453 0.77408 0.95143 0.94744 0.80101 0.93019 0.78402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 9.75 59.85 0.58 1.00 16 2 N -0.59 -5.46 2.83 -182.82 -0.52 -5.98 16 3 C 0.09 0.84 5.18 -4.04 -0.02 0.82 16 4 C 0.08 1.11 3.27 -26.73 -0.09 1.02 16 5 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 6 O -0.55 -8.85 12.01 -48.05 -0.58 -9.43 16 7 C 0.13 2.30 5.90 -4.04 -0.02 2.28 16 8 N -0.75 -17.61 5.35 -59.91 -0.32 -17.93 16 9 C -0.25 -6.98 10.47 -15.06 -0.16 -7.13 16 10 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 11 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 12 N -0.93 -29.35 13.97 55.49 0.78 -28.58 16 13 Si 0.88 22.40 27.74 -169.99 -4.71 17.68 16 14 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 16 H -0.27 -6.68 6.52 56.52 0.37 -6.31 16 17 C 0.61 6.48 7.23 -12.48 -0.09 6.39 16 18 O -0.50 -6.52 15.07 -7.52 -0.11 -6.64 16 19 C -0.06 -0.54 6.90 -36.32 -0.25 -0.79 16 20 C -0.11 -0.94 10.92 -38.95 -0.43 -1.37 16 21 C -0.09 -0.76 6.58 -82.17 -0.54 -1.30 16 22 C 0.56 4.64 3.53 36.01 0.13 4.77 16 23 F -0.16 -1.47 17.17 2.25 0.04 -1.43 16 24 F -0.16 -1.33 17.30 2.25 0.04 -1.29 16 25 F -0.16 -1.29 17.30 2.25 0.04 -1.25 16 26 N -0.29 -2.80 11.86 33.52 0.40 -2.41 16 27 O 0.15 1.32 7.97 15.56 0.12 1.44 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.42 5.37 -51.93 -0.28 0.15 16 30 H 0.09 0.39 7.83 -51.93 -0.41 -0.01 16 31 H 0.09 0.96 7.48 -51.93 -0.39 0.57 16 32 H 0.10 0.73 7.86 -51.93 -0.41 0.32 16 33 H 0.38 5.58 8.33 45.56 0.38 5.96 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.37 8.67 5.53 -40.82 -0.23 8.45 16 37 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 38 H 0.20 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 343.92 15.07 5.18 5.18 Total: -1.00 -34.05 343.92 -3.66 -37.71 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -3.03 Total: 7.16 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -0.98 Total: 5.76 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.33 Total: -54.89 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.57 Total: -14.63 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.12 Total: -3.97 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.68 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.05 -3.66 -37.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507486733.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.088 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds