Wall clock time and date at job start Tue Mar 31 2020 20:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00306 * 2 1 4 4 C 1.53002 * 109.47348 * 270.00509 * 3 2 1 5 5 H 1.08997 * 109.47109 * 59.99559 * 4 3 2 6 6 O 1.42900 * 109.46661 * 299.99730 * 4 3 2 7 7 C 1.52995 * 109.46995 * 179.97438 * 4 3 2 8 8 N 1.46504 * 109.47057 * 184.99933 * 7 4 3 9 9 C 1.36932 * 119.99808 * 179.72560 * 8 7 4 10 10 H 1.08002 * 120.00268 * 0.27744 * 9 8 7 11 11 C 1.38818 * 119.99918 * 180.27314 * 9 8 7 12 12 N 1.31618 * 120.00169 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99906 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47021 * 89.99464 * 13 11 9 15 15 H 1.48491 * 109.47235 * 209.99667 * 13 11 9 16 16 H 1.48503 * 109.46854 * 329.99960 * 13 11 9 17 17 C 1.34785 * 120.00018 * 180.02562 * 2 1 3 18 18 O 1.21582 * 120.00033 * 176.12965 * 17 2 1 19 19 C 1.47510 * 119.99739 * 356.13033 * 17 2 1 20 20 C 1.36821 * 126.94445 * 185.79936 * 19 17 2 21 21 C 1.41259 * 103.84958 * 179.97438 * 20 19 17 22 22 C 1.50700 * 126.70778 * 180.09695 * 21 20 19 23 23 F 1.39895 * 109.47458 * 185.25776 * 22 21 20 24 24 F 1.39901 * 109.47226 * 305.26301 * 22 21 20 25 25 F 1.39906 * 109.46652 * 65.26059 * 22 21 20 26 26 N 1.30126 * 106.58871 * 0.33608 * 21 20 19 27 27 O 1.20887 * 111.98093 * 359.78327 * 26 21 20 28 28 H 1.08997 * 109.47615 * 95.62130 * 1 2 3 29 29 H 1.08997 * 109.46959 * 215.62150 * 1 2 3 30 30 H 1.09005 * 109.46790 * 335.61493 * 1 2 3 31 31 H 1.08998 * 109.46933 * 149.99940 * 3 2 1 32 32 H 1.09003 * 109.46509 * 30.00554 * 3 2 1 33 33 H 0.96692 * 114.00368 * 299.99861 * 6 4 3 34 34 H 1.09005 * 109.47356 * 65.00357 * 7 4 3 35 35 H 1.09002 * 109.47420 * 304.99642 * 7 4 3 36 36 H 0.96998 * 119.99973 * 0.02562 * 8 7 4 37 37 H 0.97003 * 119.99809 * 179.97438 * 12 11 9 38 38 H 1.08008 * 128.07567 * 0.03511 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5001 1.8408 -1.9563 6 8 3.2248 0.7145 -2.1161 7 6 3.2170 3.0357 -1.4424 8 7 3.3568 3.5189 -2.8184 9 6 4.0058 4.6988 -3.0670 10 1 4.4184 5.2709 -2.2493 11 6 4.1334 5.1594 -4.3703 12 7 4.7567 6.2938 -4.6093 13 14 3.4191 4.1701 -5.7847 14 1 2.0198 4.6007 -6.0330 15 1 4.2311 4.3970 -7.0071 16 1 3.4386 2.7262 -5.4383 17 6 2.1389 -1.1673 -0.0005 18 8 3.3527 -1.1684 -0.0716 19 6 1.4038 -2.4433 0.0851 20 6 1.9416 -3.6956 0.2062 21 6 0.8139 -4.5455 0.2451 22 6 0.8216 -6.0469 0.3738 23 9 -0.4852 -6.5319 0.2548 24 9 1.6172 -6.5976 -0.6366 25 9 1.3399 -6.4052 1.6229 26 7 -0.2327 -3.7790 0.1429 27 8 0.0684 -2.6116 0.0531 28 1 -0.3634 -0.1007 -1.0227 29 1 -0.3633 -0.8354 0.5985 30 1 -0.3633 0.9361 0.4243 31 1 3.1499 1.1383 0.5138 32 1 1.6085 2.0283 0.5140 33 1 4.0872 0.5460 -1.7127 34 1 4.2053 2.8851 -1.0081 35 1 2.6693 3.7711 -0.8530 36 1 2.9860 3.0052 -3.5528 37 1 4.8461 6.6154 -5.5201 38 1 2.9847 -3.9702 0.2604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507486733.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:15 Heat of formation + Delta-G solvation = -162.276820 kcal Electronic energy + Delta-G solvation = -29042.759216 eV Core-core repulsion = 24088.434223 eV Total energy + Delta-G solvation = -4954.324993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.45580 -48.97123 -48.95549 -46.68013 -41.15643 -38.78375 -36.82943 -36.02521 -35.79646 -33.67513 -33.42984 -31.16594 -28.63063 -28.11187 -27.49923 -25.27487 -24.47088 -23.60561 -22.71232 -21.76135 -20.01794 -19.79436 -19.77512 -19.42926 -19.15680 -18.38610 -17.97580 -17.42972 -17.04480 -16.61242 -16.37707 -16.26630 -15.79974 -15.73961 -15.40252 -15.35522 -15.24515 -15.07469 -15.06450 -14.98832 -14.76365 -14.33457 -14.02818 -13.86728 -13.80572 -13.38302 -13.28744 -13.12663 -12.83633 -12.58010 -12.28621 -12.24909 -11.94670 -11.84465 -11.56730 -11.22066 -11.12042 -10.98983 -9.73964 -9.29587 -8.03343 -5.35818 -0.62449 0.18242 0.91275 1.15370 1.38524 1.41432 1.49343 1.73475 1.81124 2.08654 2.41861 2.48276 3.00355 3.14253 3.27292 3.31370 3.37555 3.47957 3.67484 3.69011 4.00961 4.14684 4.20913 4.36503 4.38855 4.54477 4.64210 4.76254 4.95820 4.96267 5.23544 5.26367 5.75000 6.00520 6.20796 6.35803 6.73922 6.82846 7.08432 7.85644 8.02566 9.17966 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.024165 B = 0.002235 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.445962 B =12525.513336 C =12854.140760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.588 5.588 3 C 0.094 3.906 4 C 0.089 3.911 5 H 0.101 0.899 6 O -0.569 6.569 7 C 0.124 3.876 8 N -0.756 5.756 9 C -0.232 4.232 10 H 0.061 0.939 11 C -0.064 4.064 12 N -0.983 5.983 13 Si 0.954 3.046 14 H -0.275 1.275 15 H -0.297 1.297 16 H -0.259 1.259 17 C 0.604 3.396 18 O -0.527 6.527 19 C -0.065 4.065 20 C -0.106 4.106 21 C -0.091 4.091 22 C 0.565 3.435 23 F -0.167 7.167 24 F -0.159 7.159 25 F -0.159 7.159 26 N -0.306 5.306 27 O 0.165 5.835 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.381 0.619 34 H 0.029 0.971 35 H 0.050 0.950 36 H 0.366 0.634 37 H 0.258 0.742 38 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.071 -25.317 15.917 32.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.318 5.318 3 C -0.029 4.029 4 C 0.029 3.971 5 H 0.119 0.881 6 O -0.376 6.376 7 C -0.003 4.003 8 N -0.401 5.401 9 C -0.363 4.363 10 H 0.079 0.921 11 C -0.255 4.255 12 N -0.634 5.634 13 Si 0.781 3.219 14 H -0.201 1.201 15 H -0.224 1.224 16 H -0.184 1.184 17 C 0.388 3.612 18 O -0.404 6.404 19 C -0.131 4.131 20 C -0.128 4.128 21 C -0.248 4.248 22 C 0.510 3.490 23 F -0.148 7.148 24 F -0.141 7.141 25 F -0.140 7.140 26 N 0.003 4.997 27 O 0.079 5.921 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.110 0.890 32 H 0.148 0.852 33 H 0.230 0.770 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.199 0.801 37 H 0.067 0.933 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -14.177 -25.507 15.568 33.075 hybrid contribution 1.124 -0.324 -0.800 1.417 sum -13.053 -25.830 14.768 32.491 Atomic orbital electron populations 1.22406 0.76380 1.05800 1.03690 1.47656 1.08795 1.04873 1.70503 1.22326 0.99540 0.84663 0.96360 1.22525 0.94881 0.86157 0.93534 0.88086 1.86503 1.33871 1.59247 1.57945 1.21470 0.98229 0.94692 0.85878 1.42638 1.68952 1.24113 1.04446 1.19065 1.27064 0.97079 0.93141 0.92119 1.25475 1.01736 0.98365 0.99952 1.69875 1.49708 1.23490 1.20280 0.85420 0.78047 0.79361 0.79029 1.20131 1.22422 1.18364 1.16552 0.85792 0.81264 0.77571 1.90862 1.12967 1.85737 1.50793 1.24233 0.82896 0.97541 1.08386 1.22921 1.02110 0.88608 0.99203 1.23484 0.91953 0.96476 1.12894 1.16496 0.74324 0.83510 0.74671 1.93258 1.36641 1.89229 1.95664 1.93288 1.73944 1.86581 1.60254 1.93286 1.86715 1.92544 1.41450 1.73789 1.23513 0.90337 1.12015 1.85229 1.23012 1.19506 1.64319 0.91308 0.89563 0.86942 0.88995 0.85196 0.77032 0.95288 0.93234 0.80100 0.93347 0.76890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 9.75 127.77 1.25 1.80 16 2 N -0.59 -9.28 2.83 -850.57 -2.41 -11.69 16 3 C 0.09 1.59 5.18 86.38 0.45 2.03 16 4 C 0.09 2.27 3.27 30.59 0.10 2.37 16 5 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 6 O -0.57 -17.32 12.01 -136.73 -1.64 -18.96 16 7 C 0.12 4.17 5.90 86.38 0.51 4.68 16 8 N -0.76 -34.59 5.35 -343.44 -1.84 -36.43 16 9 C -0.23 -13.15 10.47 84.04 0.88 -12.27 16 10 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 11 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 12 N -0.98 -63.06 13.97 21.65 0.30 -62.76 16 13 Si 0.95 46.32 27.74 68.60 1.90 48.23 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 15 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 16 H -0.26 -11.82 6.52 99.48 0.65 -11.17 16 17 C 0.60 11.80 7.23 86.69 0.63 12.43 16 18 O -0.53 -13.22 15.07 8.28 0.12 -13.10 16 19 C -0.07 -1.07 6.90 24.38 0.17 -0.91 16 20 C -0.11 -1.59 10.92 22.68 0.25 -1.35 16 21 C -0.09 -1.47 6.58 43.55 0.29 -1.19 16 22 C 0.57 8.62 3.53 71.24 0.25 8.87 16 23 F -0.17 -2.83 17.17 44.97 0.77 -2.06 16 24 F -0.16 -2.46 17.30 44.97 0.78 -1.68 16 25 F -0.16 -2.32 17.30 44.97 0.78 -1.54 16 26 N -0.31 -5.34 11.86 -48.87 -0.58 -5.91 16 27 O 0.17 2.51 7.97 65.86 0.53 3.04 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 29 H 0.09 0.69 5.37 -2.39 -0.01 0.68 16 30 H 0.11 0.54 7.83 -2.38 -0.02 0.52 16 31 H 0.09 1.66 7.48 -2.39 -0.02 1.64 16 32 H 0.13 1.38 7.86 -2.39 -0.02 1.36 16 33 H 0.38 10.88 8.33 -74.06 -0.62 10.26 16 34 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.37 16.64 5.53 -92.71 -0.51 16.13 16 37 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 38 H 0.21 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -73.51 343.92 3.92 -69.59 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -0.03 Total: 20.11 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 5.23 Total: 13.17 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -4.52 Total: -116.79 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.99 Total: -29.03 kcal Atomic # 9 Polarization: -7.61 SS G_CDS: 2.33 Total: -5.28 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.90 Total: 48.23 kcal Total: -73.51 3.92 -69.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507486733.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.684 kcal (2) G-P(sol) polarization free energy of solvation -73.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds