Wall clock time and date at job start Tue Mar 31 2020 20:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46500 * 120.00316 * 2 1 4 4 C 1.53002 * 109.47354 * 270.00200 * 3 2 1 5 5 H 1.09005 * 109.47191 * 305.00516 * 4 3 2 6 6 O 1.42905 * 109.46903 * 64.99761 * 4 3 2 7 7 C 1.52997 * 109.47467 * 184.99607 * 4 3 2 8 8 N 1.46494 * 109.47218 * 179.97438 * 7 4 3 9 9 C 1.36937 * 119.99924 * 180.02562 * 8 7 4 10 10 H 1.08001 * 120.00345 * 359.97438 * 9 8 7 11 11 C 1.38817 * 120.00271 * 180.02562 * 9 8 7 12 12 N 1.31628 * 119.99370 * 359.97438 * 11 9 8 13 13 Si 1.86787 * 120.00358 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47277 * 59.99590 * 13 11 9 15 15 H 1.48503 * 109.47514 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47163 * 299.99700 * 13 11 9 17 17 C 1.34781 * 120.00183 * 180.02562 * 2 1 3 18 18 O 1.21582 * 120.00274 * 183.43043 * 17 2 1 19 19 C 1.47517 * 119.99673 * 3.43002 * 17 2 1 20 20 C 1.36822 * 126.94343 * 173.45655 * 19 17 2 21 21 C 1.41263 * 103.84821 * 180.26243 * 20 19 17 22 22 C 1.50699 * 126.70601 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.46877 * 184.99915 * 22 21 20 24 24 F 1.39891 * 109.47377 * 305.00185 * 22 21 20 25 25 F 1.39897 * 109.46676 * 65.00768 * 22 21 20 26 26 N 1.30130 * 106.58879 * 0.02562 * 21 20 19 27 27 O 1.20893 * 111.98589 * 359.97438 * 26 21 20 28 28 H 1.09003 * 109.47182 * 264.14786 * 1 2 3 29 29 H 1.09000 * 109.47491 * 24.14656 * 1 2 3 30 30 H 1.08999 * 109.47856 * 144.14705 * 1 2 3 31 31 H 1.08993 * 109.47272 * 29.99969 * 3 2 1 32 32 H 1.08995 * 109.47151 * 150.00513 * 3 2 1 33 33 H 0.96698 * 113.99758 * 60.00405 * 6 4 3 34 34 H 1.08996 * 109.47418 * 300.00683 * 7 4 3 35 35 H 1.09000 * 109.46595 * 60.00445 * 7 4 3 36 36 H 0.97000 * 120.00225 * 0.02562 * 8 7 4 37 37 H 0.97006 * 119.99228 * 180.02562 * 12 11 9 38 38 H 1.07996 * 128.07714 * 0.24124 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9641 0.9131 -1.9816 6 8 1.2060 1.9936 -2.0814 7 6 3.3238 2.9681 -1.4444 8 7 3.5684 3.3906 -2.8255 9 6 4.3295 4.5009 -3.0773 10 1 4.7490 5.0652 -2.2576 11 6 4.5609 4.9016 -4.3860 12 7 4.0491 4.2141 -5.3850 13 14 5.5984 6.4164 -4.7294 14 1 6.9593 6.2221 -4.1677 15 1 5.6944 6.6287 -6.1960 16 1 4.9669 7.6027 -4.0974 17 6 2.1389 -1.1672 -0.0005 18 8 3.3530 -1.1682 0.0625 19 6 1.4032 -2.4436 -0.0775 20 6 1.9396 -3.6950 -0.2126 21 6 0.8117 -4.5451 -0.2400 22 6 0.8181 -6.0460 -0.3751 23 9 -0.4976 -6.5108 -0.4752 24 9 1.5293 -6.4078 -1.5241 25 9 1.4285 -6.6127 0.7490 26 7 -0.2339 -3.7788 -0.1269 27 8 0.0680 -2.6118 -0.0354 28 1 -0.3634 -0.1048 1.0223 29 1 -0.3634 0.9377 -0.4204 30 1 -0.3635 -0.8329 -0.6019 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5137 33 1 0.6955 2.6950 -1.6542 34 1 2.8122 3.7654 -0.9052 35 1 4.2746 2.7520 -0.9571 36 1 3.1913 2.8840 -3.5618 37 1 4.2112 4.4940 -6.2996 38 1 2.9819 -3.9689 -0.2824 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507486734.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:18 Heat of formation + Delta-G solvation = -140.574376 kcal Electronic energy + Delta-G solvation = -28892.867501 eV Core-core repulsion = 23939.483597 eV Total energy + Delta-G solvation = -4953.383904 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.74172 -48.25555 -48.24053 -45.92578 -40.28796 -37.70108 -35.83202 -35.04221 -34.05579 -32.88677 -31.38524 -29.65835 -27.87079 -27.08767 -26.17307 -24.19312 -23.53330 -22.56145 -21.34628 -20.95750 -19.29351 -19.04172 -18.65224 -18.41085 -17.65108 -17.19822 -16.86125 -16.58705 -16.20037 -15.37660 -15.22122 -15.08764 -15.00492 -14.63993 -14.54445 -14.47821 -14.35748 -14.34291 -14.04918 -13.85269 -13.34506 -13.14035 -13.00723 -12.68884 -12.59252 -12.45793 -12.16016 -11.66501 -11.53353 -10.97777 -10.85963 -10.80450 -10.69725 -10.46483 -10.23103 -9.94004 -9.73986 -8.91137 -8.80610 -6.94480 -5.76252 -3.06179 0.12526 0.91532 1.63682 1.93080 2.45769 2.62013 2.80157 3.14001 3.43435 3.47623 3.49114 3.70885 3.87689 4.03820 4.14325 4.39688 4.50440 4.64996 4.82138 4.90222 5.01957 5.05291 5.19567 5.48979 5.53589 5.56564 5.60895 5.86461 6.05454 6.24125 6.48144 6.64421 6.79234 7.08884 7.53561 7.66782 7.93023 8.41801 9.53240 10.10397 10.45875 11.45962 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.022418 B = 0.002131 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.705837 B =13137.330409 C =13574.921910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.588 5.588 3 C 0.085 3.915 4 C 0.085 3.915 5 H 0.101 0.899 6 O -0.549 6.549 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.245 4.245 10 H 0.069 0.931 11 C -0.012 4.012 12 N -0.930 5.930 13 Si 0.909 3.091 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.599 3.401 18 O -0.500 6.500 19 C -0.060 4.060 20 C -0.112 4.112 21 C -0.086 4.086 22 C 0.560 3.440 23 F -0.162 7.162 24 F -0.159 7.159 25 F -0.161 7.161 26 N -0.293 5.293 27 O 0.155 5.845 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.368 0.632 34 H 0.021 0.979 35 H 0.028 0.972 36 H 0.389 0.611 37 H 0.256 0.744 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.725 -18.384 15.436 26.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.319 5.319 3 C -0.038 4.038 4 C 0.024 3.976 5 H 0.119 0.881 6 O -0.354 6.354 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.376 4.376 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.383 3.617 18 O -0.375 6.375 19 C -0.125 4.125 20 C -0.135 4.135 21 C -0.244 4.244 22 C 0.505 3.495 23 F -0.143 7.143 24 F -0.140 7.140 25 F -0.143 7.143 26 N 0.015 4.985 27 O 0.070 5.930 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.215 0.785 34 H 0.039 0.961 35 H 0.046 0.954 36 H 0.224 0.776 37 H 0.066 0.934 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -11.091 -19.055 15.103 26.725 hybrid contribution 0.983 0.795 -0.199 1.280 sum -10.108 -18.260 14.904 25.646 Atomic orbital electron populations 1.22132 0.78060 1.04832 1.02214 1.47632 1.07918 1.05445 1.70905 1.22449 0.98667 0.83442 0.99201 1.22576 0.85437 0.98490 0.91072 0.88071 1.86638 1.32189 1.59047 1.57503 1.21204 0.96353 0.92737 0.89905 1.42224 1.61784 1.32307 1.00712 1.19165 1.23878 1.02727 0.91806 0.91282 1.24771 1.01111 0.99390 0.95590 1.69679 1.48963 1.40836 0.98294 0.86254 0.80158 0.82733 0.76917 1.21234 1.21656 1.21259 1.16524 0.86056 0.80814 0.78341 1.90937 1.11517 1.85363 1.49687 1.24404 0.82718 0.97735 1.07656 1.22689 1.01512 0.89037 1.00259 1.23397 0.91931 0.96263 1.12786 1.16585 0.74544 0.83727 0.74651 1.93268 1.35411 1.89826 1.95804 1.93286 1.78438 1.92449 1.49877 1.93277 1.83155 1.86042 1.51796 1.73808 1.23057 0.89949 1.11679 1.85239 1.23245 1.19895 1.64575 0.91802 0.89008 0.90440 0.89115 0.88098 0.78509 0.96138 0.95398 0.77639 0.93414 0.78384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 9.45 59.84 0.57 1.07 16 2 N -0.59 -5.96 2.84 -182.83 -0.52 -6.48 16 3 C 0.08 0.92 5.06 -4.04 -0.02 0.90 16 4 C 0.08 1.27 3.30 -26.73 -0.09 1.18 16 5 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 6 O -0.55 -8.20 12.02 -35.23 -0.42 -8.62 16 7 C 0.13 2.38 5.92 -4.05 -0.02 2.35 16 8 N -0.73 -18.29 5.49 -59.91 -0.33 -18.62 16 9 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 10 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 11 C -0.01 -0.35 5.50 -17.42 -0.10 -0.45 16 12 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 13 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 C 0.60 7.00 7.67 -12.48 -0.10 6.90 16 18 O -0.50 -7.33 16.48 5.29 0.09 -7.25 16 19 C -0.06 -0.59 6.89 -36.31 -0.25 -0.84 16 20 C -0.11 -1.03 10.92 -38.95 -0.43 -1.45 16 21 C -0.09 -0.82 6.58 -82.16 -0.54 -1.36 16 22 C 0.56 4.96 3.53 36.01 0.13 5.09 16 23 F -0.16 -1.55 17.17 2.25 0.04 -1.51 16 24 F -0.16 -1.43 17.30 2.25 0.04 -1.39 16 25 F -0.16 -1.38 17.30 2.25 0.04 -1.34 16 26 N -0.29 -2.98 11.86 33.52 0.40 -2.58 16 27 O 0.16 1.43 7.99 15.54 0.12 1.55 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.59 7.24 -51.93 -0.38 0.22 16 30 H 0.08 0.58 5.41 -51.93 -0.28 0.30 16 31 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.10 1.16 7.38 -51.93 -0.38 0.78 16 33 H 0.37 4.17 9.04 45.56 0.41 4.59 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.39 10.63 7.54 -40.82 -0.31 10.32 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.20 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 348.65 15.07 5.25 5.25 Total: -1.00 -33.59 348.65 -3.60 -37.19 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -3.01 Total: 7.75 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -1.00 Total: 6.41 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.27 Total: -55.39 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.21 Total: -14.32 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.12 Total: -4.24 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.59 -3.60 -37.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507486734.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.384 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds