Wall clock time and date at job start Tue Mar 31 2020 20:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46500 * 120.00316 * 2 1 4 4 C 1.53002 * 109.47354 * 270.00200 * 3 2 1 5 5 H 1.09005 * 109.47191 * 305.00516 * 4 3 2 6 6 O 1.42905 * 109.46903 * 64.99761 * 4 3 2 7 7 C 1.52997 * 109.47467 * 184.99607 * 4 3 2 8 8 N 1.46494 * 109.47218 * 179.97438 * 7 4 3 9 9 C 1.36937 * 119.99924 * 180.02562 * 8 7 4 10 10 H 1.08001 * 120.00345 * 359.97438 * 9 8 7 11 11 C 1.38817 * 120.00271 * 180.02562 * 9 8 7 12 12 N 1.31628 * 119.99370 * 359.97438 * 11 9 8 13 13 Si 1.86787 * 120.00358 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47277 * 59.99590 * 13 11 9 15 15 H 1.48503 * 109.47514 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47163 * 299.99700 * 13 11 9 17 17 C 1.34781 * 120.00183 * 180.02562 * 2 1 3 18 18 O 1.21582 * 120.00274 * 183.43043 * 17 2 1 19 19 C 1.47517 * 119.99673 * 3.43002 * 17 2 1 20 20 C 1.36822 * 126.94343 * 173.45655 * 19 17 2 21 21 C 1.41263 * 103.84821 * 180.26243 * 20 19 17 22 22 C 1.50699 * 126.70601 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.46877 * 184.99915 * 22 21 20 24 24 F 1.39891 * 109.47377 * 305.00185 * 22 21 20 25 25 F 1.39897 * 109.46676 * 65.00768 * 22 21 20 26 26 N 1.30130 * 106.58879 * 0.02562 * 21 20 19 27 27 O 1.20893 * 111.98589 * 359.97438 * 26 21 20 28 28 H 1.09003 * 109.47182 * 264.14786 * 1 2 3 29 29 H 1.09000 * 109.47491 * 24.14656 * 1 2 3 30 30 H 1.08999 * 109.47856 * 144.14705 * 1 2 3 31 31 H 1.08993 * 109.47272 * 29.99969 * 3 2 1 32 32 H 1.08995 * 109.47151 * 150.00513 * 3 2 1 33 33 H 0.96698 * 113.99758 * 60.00405 * 6 4 3 34 34 H 1.08996 * 109.47418 * 300.00683 * 7 4 3 35 35 H 1.09000 * 109.46595 * 60.00445 * 7 4 3 36 36 H 0.97000 * 120.00225 * 0.02562 * 8 7 4 37 37 H 0.97006 * 119.99228 * 180.02562 * 12 11 9 38 38 H 1.07996 * 128.07714 * 0.24124 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9641 0.9131 -1.9816 6 8 1.2060 1.9936 -2.0814 7 6 3.3238 2.9681 -1.4444 8 7 3.5684 3.3906 -2.8255 9 6 4.3295 4.5009 -3.0773 10 1 4.7490 5.0652 -2.2576 11 6 4.5609 4.9016 -4.3860 12 7 4.0491 4.2141 -5.3850 13 14 5.5984 6.4164 -4.7294 14 1 6.9593 6.2221 -4.1677 15 1 5.6944 6.6287 -6.1960 16 1 4.9669 7.6027 -4.0974 17 6 2.1389 -1.1672 -0.0005 18 8 3.3530 -1.1682 0.0625 19 6 1.4032 -2.4436 -0.0775 20 6 1.9396 -3.6950 -0.2126 21 6 0.8117 -4.5451 -0.2400 22 6 0.8181 -6.0460 -0.3751 23 9 -0.4976 -6.5108 -0.4752 24 9 1.5293 -6.4078 -1.5241 25 9 1.4285 -6.6127 0.7490 26 7 -0.2339 -3.7788 -0.1269 27 8 0.0680 -2.6118 -0.0354 28 1 -0.3634 -0.1048 1.0223 29 1 -0.3634 0.9377 -0.4204 30 1 -0.3635 -0.8329 -0.6019 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5137 33 1 0.6955 2.6950 -1.6542 34 1 2.8122 3.7654 -0.9052 35 1 4.2746 2.7520 -0.9571 36 1 3.1913 2.8840 -3.5618 37 1 4.2112 4.4940 -6.2996 38 1 2.9819 -3.9689 -0.2824 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507486734.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:17 Heat of formation + Delta-G solvation = -166.262895 kcal Electronic energy + Delta-G solvation = -28893.981439 eV Core-core repulsion = 23939.483597 eV Total energy + Delta-G solvation = -4954.497842 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.45935 -48.97182 -48.95950 -46.68993 -41.20227 -38.89873 -36.78371 -35.97720 -35.71845 -33.71820 -33.15907 -30.98744 -28.61734 -27.92888 -27.48520 -25.43063 -24.56547 -23.77253 -22.69624 -21.79511 -20.02122 -19.78598 -19.43969 -19.23600 -19.15309 -18.40000 -17.93793 -17.43197 -17.14444 -16.60301 -16.40741 -16.28840 -15.80201 -15.74040 -15.41389 -15.35688 -15.26379 -15.07607 -15.07521 -15.02463 -14.65397 -14.35152 -13.92623 -13.82309 -13.67614 -13.37235 -13.20138 -12.95623 -12.71764 -12.58190 -12.28121 -12.20445 -12.04586 -11.80830 -11.66744 -11.25823 -11.15011 -10.95048 -9.73648 -8.99511 -7.93364 -5.22988 -0.65679 0.16198 0.90448 1.12923 1.48000 1.51544 1.57564 1.60572 1.82577 2.07667 2.40247 2.57128 3.00100 3.13021 3.29677 3.38129 3.40423 3.49938 3.65180 3.75180 4.02392 4.17689 4.27995 4.36675 4.47214 4.56684 4.67264 4.77412 4.95849 5.00848 5.17438 5.31656 5.49052 5.96769 6.27491 6.33224 6.67718 6.93774 7.34151 8.11342 8.32867 9.29910 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.022418 B = 0.002131 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.705837 B =13137.330409 C =13574.921910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.584 5.584 3 C 0.096 3.904 4 C 0.101 3.899 5 H 0.068 0.932 6 O -0.562 6.562 7 C 0.122 3.878 8 N -0.743 5.743 9 C -0.246 4.246 10 H 0.079 0.921 11 C -0.079 4.079 12 N -0.971 5.971 13 Si 0.976 3.024 14 H -0.278 1.278 15 H -0.298 1.298 16 H -0.274 1.274 17 C 0.597 3.403 18 O -0.538 6.538 19 C -0.066 4.066 20 C -0.106 4.106 21 C -0.090 4.090 22 C 0.566 3.434 23 F -0.166 7.166 24 F -0.159 7.159 25 F -0.158 7.158 26 N -0.304 5.304 27 O 0.168 5.832 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.130 0.870 32 H 0.095 0.905 33 H 0.386 0.614 34 H 0.044 0.956 35 H 0.027 0.973 36 H 0.374 0.626 37 H 0.250 0.750 38 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.437 -17.887 17.089 27.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.313 5.313 3 C -0.027 4.027 4 C 0.040 3.960 5 H 0.086 0.914 6 O -0.369 6.369 7 C -0.005 4.005 8 N -0.385 5.385 9 C -0.378 4.378 10 H 0.097 0.903 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.805 3.195 14 H -0.205 1.205 15 H -0.224 1.224 16 H -0.200 1.200 17 C 0.381 3.619 18 O -0.416 6.416 19 C -0.131 4.131 20 C -0.129 4.129 21 C -0.248 4.248 22 C 0.511 3.489 23 F -0.147 7.147 24 F -0.141 7.141 25 F -0.140 7.140 26 N 0.006 4.994 27 O 0.082 5.918 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.093 0.907 31 H 0.148 0.852 32 H 0.113 0.887 33 H 0.235 0.765 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.206 0.794 37 H 0.059 0.941 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -11.845 -18.561 16.823 27.710 hybrid contribution 1.137 0.604 -0.649 1.442 sum -10.708 -17.957 16.174 26.433 Atomic orbital electron populations 1.22380 0.76031 1.05389 1.03928 1.47715 1.09122 1.04717 1.69789 1.22293 0.99600 0.84663 0.96156 1.22244 0.84749 0.95692 0.93320 0.91414 1.86608 1.31983 1.59929 1.58413 1.21448 0.97299 0.95014 0.86736 1.42463 1.61503 1.31658 1.02924 1.19639 1.23025 1.03050 0.92102 0.90289 1.25636 1.03132 1.02726 0.95616 1.69853 1.51120 1.42849 0.98326 0.85177 0.78722 0.79457 0.76180 1.20451 1.22391 1.19978 1.16706 0.85744 0.81584 0.77829 1.90915 1.13080 1.86003 1.51578 1.24144 0.83015 0.97311 1.08666 1.22931 1.02178 0.88687 0.99084 1.23485 0.91864 0.96544 1.12868 1.16473 0.74359 0.83426 0.74679 1.93260 1.35762 1.89847 1.95834 1.93287 1.78414 1.92425 1.49934 1.93284 1.83071 1.85963 1.51640 1.73782 1.23414 0.90307 1.11920 1.85245 1.22799 1.19528 1.64235 0.89265 0.87815 0.90735 0.85233 0.88674 0.76490 0.93842 0.95481 0.79407 0.94091 0.76964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 9.45 127.77 1.21 1.96 16 2 N -0.58 -10.75 2.84 -850.61 -2.41 -13.17 16 3 C 0.10 1.87 5.06 86.38 0.44 2.30 16 4 C 0.10 2.93 3.30 30.59 0.10 3.03 16 5 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 6 O -0.56 -16.01 12.02 -148.98 -1.79 -17.80 16 7 C 0.12 4.45 5.92 86.38 0.51 4.96 16 8 N -0.74 -37.51 5.49 -343.47 -1.89 -39.40 16 9 C -0.25 -13.68 9.99 84.03 0.84 -12.84 16 10 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 11 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 12 N -0.97 -60.49 13.06 21.65 0.28 -60.21 16 13 Si 0.98 46.05 29.55 68.60 2.03 48.08 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 17 C 0.60 13.43 7.67 86.69 0.67 14.10 16 18 O -0.54 -15.75 16.48 -3.97 -0.07 -15.82 16 19 C -0.07 -1.24 6.89 24.39 0.17 -1.07 16 20 C -0.11 -1.84 10.92 22.68 0.25 -1.59 16 21 C -0.09 -1.63 6.58 43.55 0.29 -1.34 16 22 C 0.57 9.47 3.53 71.24 0.25 9.72 16 23 F -0.17 -3.02 17.17 44.97 0.77 -2.25 16 24 F -0.16 -2.71 17.30 44.97 0.78 -1.93 16 25 F -0.16 -2.53 17.30 44.97 0.78 -1.76 16 26 N -0.30 -5.79 11.86 -48.84 -0.58 -6.37 16 27 O 0.17 2.86 7.99 65.77 0.53 3.39 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 29 H 0.10 1.00 7.24 -2.39 -0.02 0.98 16 30 H 0.07 0.95 5.41 -2.39 -0.01 0.94 16 31 H 0.13 1.56 8.07 -2.39 -0.02 1.54 16 32 H 0.09 2.04 7.38 -2.39 -0.02 2.02 16 33 H 0.39 7.77 9.04 -74.06 -0.67 7.10 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.37 20.86 7.54 -92.71 -0.70 20.16 16 37 H 0.25 15.15 8.31 -92.70 -0.77 14.38 16 38 H 0.21 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -72.96 348.65 3.40 -69.56 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -0.21 Total: 22.54 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 5.18 Total: 15.13 kcal Atomic # 7 Polarization: -114.55 SS G_CDS: -4.60 Total: -119.15 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.33 Total: -30.23 kcal Atomic # 9 Polarization: -8.26 SS G_CDS: 2.33 Total: -5.94 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -72.96 3.40 -69.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507486734.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.703 kcal (2) G-P(sol) polarization free energy of solvation -72.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds