Wall clock time and date at job start Tue Mar 31 2020 20:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00121 * 2 1 4 4 C 1.53000 * 109.46989 * 269.99928 * 3 2 1 5 5 H 1.08996 * 109.46846 * 60.00068 * 4 3 2 6 6 O 1.42897 * 109.47286 * 299.99915 * 4 3 2 7 7 C 1.53000 * 109.46857 * 179.97438 * 4 3 2 8 8 N 1.46495 * 109.47242 * 184.99833 * 7 4 3 9 9 C 1.36930 * 120.00288 * 180.02562 * 8 7 4 10 10 H 1.08001 * 120.00146 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00307 * 180.02562 * 9 8 7 12 12 N 1.31619 * 119.99995 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00206 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47573 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47397 * 119.99871 * 13 11 9 16 16 H 1.48507 * 109.47439 * 240.00008 * 13 11 9 17 17 C 1.34778 * 120.00112 * 179.97438 * 2 1 3 18 18 O 1.21606 * 120.00507 * 181.01592 * 17 2 1 19 19 C 1.47403 * 119.99584 * 1.02116 * 17 2 1 20 20 C 1.37354 * 128.56954 * 349.83962 * 19 17 2 21 21 O 1.33488 * 106.34371 * 179.97438 * 20 19 17 22 22 N 1.20652 * 113.15725 * 359.97438 * 21 20 19 23 23 C 1.30010 * 112.30333 * 0.02562 * 22 21 20 24 24 C 1.50703 * 127.33950 * 180.02562 * 23 22 21 25 25 F 1.39906 * 109.46979 * 4.97190 * 24 23 22 26 26 F 1.39901 * 109.47179 * 124.97062 * 24 23 22 27 27 F 1.39899 * 109.47300 * 244.97470 * 24 23 22 28 28 H 1.08997 * 109.47119 * 263.28615 * 1 2 3 29 29 H 1.09002 * 109.46790 * 23.28674 * 1 2 3 30 30 H 1.09002 * 109.46900 * 143.28426 * 1 2 3 31 31 H 1.08996 * 109.46813 * 30.00019 * 3 2 1 32 32 H 1.09000 * 109.47036 * 149.99837 * 3 2 1 33 33 H 0.96701 * 113.99799 * 300.00383 * 6 4 3 34 34 H 1.09000 * 109.47320 * 305.00212 * 7 4 3 35 35 H 1.09004 * 109.47127 * 65.00071 * 7 4 3 36 36 H 0.97002 * 120.00096 * 0.02562 * 8 7 4 37 37 H 0.97003 * 120.00158 * 180.02562 * 12 11 9 38 38 H 1.08007 * 126.82315 * 359.95180 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5002 1.8407 -1.9563 6 8 3.2248 0.7145 -2.1161 7 6 3.2170 3.0357 -1.4425 8 7 3.3570 3.5188 -2.8184 9 6 4.0113 4.6955 -3.0677 10 1 4.4238 5.2678 -2.2499 11 6 4.1434 5.1535 -4.3714 12 7 3.6403 4.4564 -5.3680 13 14 5.0353 6.7592 -4.7114 14 1 5.5033 7.3466 -3.4303 15 1 6.2020 6.5004 -5.5931 16 1 4.1095 7.7076 -5.3812 17 6 2.1389 -1.1672 0.0005 18 8 3.3548 -1.1674 0.0192 19 6 1.4020 -2.4436 -0.0217 20 6 0.0556 -2.6582 0.1452 21 8 -0.1305 -3.9759 0.0415 22 7 0.8911 -4.5848 -0.1615 23 6 1.9270 -3.8021 -0.2290 24 6 3.3602 -4.2012 -0.4694 25 9 3.4244 -5.5742 -0.7306 26 9 3.8636 -3.4938 -1.5664 27 9 4.1231 -3.9063 0.6656 28 1 -0.3633 -0.1201 1.0206 29 1 -0.3633 0.9440 -0.4063 30 1 -0.3633 -0.8238 -0.6144 31 1 1.6085 2.0284 0.5138 32 1 3.1500 1.1384 0.5139 33 1 4.0873 0.5460 -1.7126 34 1 2.6693 3.7711 -0.8531 35 1 4.2053 2.8851 -1.0080 36 1 2.9862 3.0050 -3.5529 37 1 3.7330 4.7763 -6.2791 38 1 -0.7018 -1.9094 0.3250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507494085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:38 Heat of formation + Delta-G solvation = -129.296756 kcal Electronic energy + Delta-G solvation = -29958.379926 eV Core-core repulsion = 25005.485056 eV Total energy + Delta-G solvation = -4952.894870 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.35756 -47.91675 -47.80857 -45.80277 -40.22135 -37.39112 -35.74597 -34.79212 -34.02255 -32.95529 -31.29769 -29.55981 -27.71142 -27.53586 -26.09260 -24.34348 -22.71391 -22.41171 -21.25146 -20.58811 -19.10068 -18.97893 -18.57008 -18.21187 -17.80145 -17.17459 -16.77923 -16.57469 -16.12035 -15.30092 -15.06372 -14.87631 -14.68306 -14.59224 -14.43220 -14.24231 -13.96380 -13.94047 -13.85450 -13.72019 -13.47432 -12.99991 -12.86236 -12.59374 -12.52927 -12.29780 -12.08908 -11.58544 -11.26503 -10.95359 -10.84108 -10.78659 -10.42163 -10.39305 -10.13302 -9.81132 -9.70461 -8.91002 -8.74909 -6.93051 -5.75661 -3.05269 0.42524 0.72374 1.89149 2.11959 2.64376 2.83098 2.99785 3.29421 3.43247 3.48496 3.51121 3.91219 4.00086 4.06203 4.14918 4.44660 4.52357 4.55822 4.70859 4.78034 4.83097 5.01157 5.13592 5.22546 5.49158 5.59162 5.64010 5.92244 6.10059 6.27494 6.48623 6.69030 6.95033 7.26289 7.68733 7.79403 8.15173 8.42405 9.53921 10.11418 10.46725 11.46729 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.002699 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.191874 B =10370.031064 C =11087.261115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.596 5.596 3 C 0.086 3.914 4 C 0.085 3.915 5 H 0.096 0.904 6 O -0.547 6.547 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.070 0.930 11 C -0.013 4.013 12 N -0.929 5.929 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.292 1.292 17 C 0.592 3.408 18 O -0.506 6.506 19 C -0.198 4.198 20 C -0.018 4.018 21 O 0.130 5.870 22 N -0.296 5.296 23 C -0.038 4.038 24 C 0.561 3.439 25 F -0.168 7.168 26 F -0.149 7.149 27 F -0.155 7.155 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.376 0.624 34 H 0.025 0.975 35 H 0.022 0.978 36 H 0.388 0.612 37 H 0.255 0.745 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.610 -16.982 16.117 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.328 5.328 3 C -0.037 4.037 4 C 0.024 3.976 5 H 0.114 0.886 6 O -0.353 6.353 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.088 0.912 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.219 1.219 17 C 0.378 3.622 18 O -0.381 6.381 19 C -0.206 4.206 20 C -0.098 4.098 21 O 0.057 5.943 22 N 0.008 4.992 23 C -0.201 4.201 24 C 0.506 3.494 25 F -0.149 7.149 26 F -0.130 7.130 27 F -0.136 7.136 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.223 0.777 34 H 0.042 0.958 35 H 0.040 0.960 36 H 0.223 0.777 37 H 0.065 0.935 38 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -11.467 -18.177 15.647 26.584 hybrid contribution 1.115 1.586 -0.165 1.946 sum -10.352 -16.591 15.482 24.942 Atomic orbital electron populations 1.22431 0.80062 1.04929 1.01696 1.47403 1.06701 1.05716 1.73019 1.22406 0.98474 0.83506 0.99266 1.22503 0.95921 0.88534 0.90625 0.88566 1.86558 1.33180 1.58736 1.56783 1.21230 0.96848 0.92313 0.89849 1.42248 1.68080 1.25305 1.01379 1.19257 1.28191 0.97738 0.92204 0.91200 1.24766 1.01475 0.99055 0.95624 1.69691 1.50288 1.39166 0.98608 0.86116 0.79058 0.83209 0.77769 1.20562 1.21809 1.21866 1.16634 0.86642 0.81510 0.77379 1.90854 1.12361 1.86427 1.48485 1.22219 0.93422 0.94277 1.10679 1.27671 0.97740 0.85822 0.98597 1.84643 1.27922 1.17968 1.63725 1.73733 0.92354 1.20012 1.13107 1.24653 0.95614 0.90971 1.08846 1.16482 0.82762 0.74663 0.75522 1.93248 1.96694 1.31035 1.93945 1.93333 1.87968 1.78225 1.53468 1.93283 1.76742 1.93006 1.50602 0.91497 0.89102 0.90473 0.88981 0.88891 0.77665 0.95763 0.96024 0.77745 0.93535 0.73159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.25 8.81 59.85 0.53 0.78 16 2 N -0.60 -5.84 2.83 -182.85 -0.52 -6.36 16 3 C 0.09 0.96 5.12 -4.04 -0.02 0.94 16 4 C 0.09 1.31 3.27 -26.73 -0.09 1.22 16 5 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 6 O -0.55 -9.94 12.12 -42.59 -0.52 -10.45 16 7 C 0.13 2.42 5.90 -4.04 -0.02 2.40 16 8 N -0.73 -18.51 5.55 -59.91 -0.33 -18.84 16 9 C -0.24 -6.84 9.99 -15.06 -0.15 -7.00 16 10 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 11 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 12 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 13 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 17 C 0.59 7.29 7.17 -12.53 -0.09 7.20 16 18 O -0.51 -7.93 14.07 -2.09 -0.03 -7.96 16 19 C -0.20 -2.02 6.26 -102.89 -0.64 -2.66 16 20 C -0.02 -0.10 10.27 30.41 0.31 0.21 16 21 O 0.13 0.97 11.06 18.67 0.21 1.18 16 22 N -0.30 -3.14 11.85 34.78 0.41 -2.72 16 23 C -0.04 -0.44 6.83 -79.77 -0.54 -0.99 16 24 C 0.56 7.39 3.00 36.01 0.11 7.50 16 25 F -0.17 -2.11 17.19 2.25 0.04 -2.08 16 26 F -0.15 -2.22 16.75 2.25 0.04 -2.18 16 27 F -0.16 -2.11 16.98 2.25 0.04 -2.08 16 28 H 0.07 0.13 7.75 -51.93 -0.40 -0.27 16 29 H 0.09 0.41 8.02 -51.93 -0.42 -0.01 16 30 H 0.08 0.27 4.89 -51.93 -0.25 0.01 16 31 H 0.09 0.78 8.07 -51.93 -0.42 0.37 16 32 H 0.09 1.12 7.41 -51.93 -0.38 0.74 16 33 H 0.38 6.48 8.48 45.56 0.39 6.87 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.39 10.71 7.67 -40.82 -0.31 10.40 16 37 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.25 0.18 4.83 -52.48 -0.25 -0.07 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -36.34 342.11 -3.39 -39.73 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -2.87 Total: 7.83 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -0.71 Total: 9.12 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.29 Total: -55.78 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.34 Total: -17.23 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.11 Total: -6.33 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.34 -3.39 -39.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507494085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.568 kcal (2) G-P(sol) polarization free energy of solvation -36.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds