Wall clock time and date at job start Tue Mar 31 2020 20:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00121 * 2 1 4 4 C 1.53000 * 109.46989 * 269.99928 * 3 2 1 5 5 H 1.08996 * 109.46846 * 60.00068 * 4 3 2 6 6 O 1.42897 * 109.47286 * 299.99915 * 4 3 2 7 7 C 1.53000 * 109.46857 * 179.97438 * 4 3 2 8 8 N 1.46495 * 109.47242 * 184.99833 * 7 4 3 9 9 C 1.36930 * 120.00288 * 180.02562 * 8 7 4 10 10 H 1.08001 * 120.00146 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00307 * 180.02562 * 9 8 7 12 12 N 1.31619 * 119.99995 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00206 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47573 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47397 * 119.99871 * 13 11 9 16 16 H 1.48507 * 109.47439 * 240.00008 * 13 11 9 17 17 C 1.34778 * 120.00112 * 179.97438 * 2 1 3 18 18 O 1.21606 * 120.00507 * 181.01592 * 17 2 1 19 19 C 1.47403 * 119.99584 * 1.02116 * 17 2 1 20 20 C 1.37354 * 128.56954 * 349.83962 * 19 17 2 21 21 O 1.33488 * 106.34371 * 179.97438 * 20 19 17 22 22 N 1.20652 * 113.15725 * 359.97438 * 21 20 19 23 23 C 1.30010 * 112.30333 * 0.02562 * 22 21 20 24 24 C 1.50703 * 127.33950 * 180.02562 * 23 22 21 25 25 F 1.39906 * 109.46979 * 4.97190 * 24 23 22 26 26 F 1.39901 * 109.47179 * 124.97062 * 24 23 22 27 27 F 1.39899 * 109.47300 * 244.97470 * 24 23 22 28 28 H 1.08997 * 109.47119 * 263.28615 * 1 2 3 29 29 H 1.09002 * 109.46790 * 23.28674 * 1 2 3 30 30 H 1.09002 * 109.46900 * 143.28426 * 1 2 3 31 31 H 1.08996 * 109.46813 * 30.00019 * 3 2 1 32 32 H 1.09000 * 109.47036 * 149.99837 * 3 2 1 33 33 H 0.96701 * 113.99799 * 300.00383 * 6 4 3 34 34 H 1.09000 * 109.47320 * 305.00212 * 7 4 3 35 35 H 1.09004 * 109.47127 * 65.00071 * 7 4 3 36 36 H 0.97002 * 120.00096 * 0.02562 * 8 7 4 37 37 H 0.97003 * 120.00158 * 180.02562 * 12 11 9 38 38 H 1.08007 * 126.82315 * 359.95180 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5002 1.8407 -1.9563 6 8 3.2248 0.7145 -2.1161 7 6 3.2170 3.0357 -1.4425 8 7 3.3570 3.5188 -2.8184 9 6 4.0113 4.6955 -3.0677 10 1 4.4238 5.2678 -2.2499 11 6 4.1434 5.1535 -4.3714 12 7 3.6403 4.4564 -5.3680 13 14 5.0353 6.7592 -4.7114 14 1 5.5033 7.3466 -3.4303 15 1 6.2020 6.5004 -5.5931 16 1 4.1095 7.7076 -5.3812 17 6 2.1389 -1.1672 0.0005 18 8 3.3548 -1.1674 0.0192 19 6 1.4020 -2.4436 -0.0217 20 6 0.0556 -2.6582 0.1452 21 8 -0.1305 -3.9759 0.0415 22 7 0.8911 -4.5848 -0.1615 23 6 1.9270 -3.8021 -0.2290 24 6 3.3602 -4.2012 -0.4694 25 9 3.4244 -5.5742 -0.7306 26 9 3.8636 -3.4938 -1.5664 27 9 4.1231 -3.9063 0.6656 28 1 -0.3633 -0.1201 1.0206 29 1 -0.3633 0.9440 -0.4063 30 1 -0.3633 -0.8238 -0.6144 31 1 1.6085 2.0284 0.5138 32 1 3.1500 1.1384 0.5139 33 1 4.0873 0.5460 -1.7126 34 1 2.6693 3.7711 -0.8531 35 1 4.2053 2.8851 -1.0080 36 1 2.9862 3.0050 -3.5529 37 1 3.7330 4.7763 -6.2791 38 1 -0.7018 -1.9094 0.3250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507494085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:37 Heat of formation + Delta-G solvation = -158.281345 kcal Electronic energy + Delta-G solvation = -29959.636792 eV Core-core repulsion = 25005.485056 eV Total energy + Delta-G solvation = -4954.151736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.39573 -48.94421 -48.88651 -46.53865 -41.08125 -38.68112 -36.65200 -35.92047 -35.52779 -33.73866 -33.14249 -30.86023 -28.63050 -28.23873 -27.39384 -25.59302 -24.19040 -23.21343 -22.65280 -21.41043 -19.93782 -19.91023 -19.57157 -19.23061 -19.03992 -18.57286 -17.90709 -17.42622 -17.00770 -16.54273 -16.45239 -16.11541 -15.80875 -15.74742 -15.41950 -15.32953 -15.28384 -15.04174 -15.00643 -14.92103 -14.51529 -14.20864 -13.97382 -13.76668 -13.66604 -13.27421 -12.99701 -12.86356 -12.77756 -12.48715 -12.13408 -12.01430 -12.00174 -11.81845 -11.34240 -11.15349 -11.01722 -10.95922 -9.64151 -9.00756 -7.94944 -5.24476 -0.19747 -0.03185 1.02608 1.44603 1.47094 1.48462 1.58238 1.92792 2.05305 2.13632 2.44556 2.55730 3.04166 3.16610 3.24129 3.37320 3.50330 3.54713 3.70264 3.79930 4.07153 4.13796 4.24943 4.31219 4.47638 4.54222 4.65730 4.79198 4.88972 4.94789 5.25835 5.36910 5.48292 6.20969 6.26193 6.62775 6.79817 6.98736 7.32655 8.09564 8.31339 9.28648 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.002699 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.191874 B =10370.031064 C =11087.261115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.592 5.592 3 C 0.098 3.902 4 C 0.093 3.907 5 H 0.096 0.904 6 O -0.569 6.569 7 C 0.123 3.877 8 N -0.742 5.742 9 C -0.245 4.245 10 H 0.078 0.922 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.975 3.025 14 H -0.264 1.264 15 H -0.297 1.297 16 H -0.291 1.291 17 C 0.584 3.416 18 O -0.555 6.555 19 C -0.229 4.229 20 C 0.033 3.967 21 O 0.151 5.849 22 N -0.309 5.309 23 C -0.066 4.066 24 C 0.557 3.443 25 F -0.169 7.169 26 F -0.165 7.165 27 F -0.163 7.163 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.080 0.920 33 H 0.375 0.625 34 H 0.046 0.954 35 H 0.019 0.981 36 H 0.374 0.626 37 H 0.250 0.750 38 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.207 -16.208 18.020 28.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.323 5.323 3 C -0.025 4.025 4 C 0.033 3.967 5 H 0.114 0.886 6 O -0.374 6.374 7 C -0.005 4.005 8 N -0.385 5.385 9 C -0.377 4.377 10 H 0.096 0.904 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.804 3.196 14 H -0.188 1.188 15 H -0.224 1.224 16 H -0.218 1.218 17 C 0.371 3.629 18 O -0.434 6.434 19 C -0.238 4.238 20 C -0.046 4.046 21 O 0.075 5.925 22 N -0.003 5.003 23 C -0.227 4.227 24 C 0.501 3.499 25 F -0.150 7.150 26 F -0.147 7.147 27 F -0.144 7.144 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.147 0.853 32 H 0.099 0.901 33 H 0.223 0.777 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.205 0.795 37 H 0.059 0.941 38 H 0.321 0.679 Dipole moment (debyes) X Y Z Total from point charges -14.084 -17.416 17.608 28.491 hybrid contribution 1.822 1.317 -0.685 2.350 sum -12.262 -16.099 16.922 26.380 Atomic orbital electron populations 1.22903 0.76737 1.06225 1.04790 1.47475 1.08749 1.04277 1.71789 1.22171 0.99286 0.85133 0.95926 1.22488 0.94610 0.86222 0.93405 0.88649 1.86530 1.33498 1.59426 1.57993 1.21465 0.97525 0.94685 0.86789 1.42483 1.67789 1.24668 1.03515 1.19702 1.27154 0.98401 0.92461 0.90398 1.25625 1.03120 1.02690 0.95630 1.69855 1.52372 1.41122 0.98719 0.85046 0.77419 0.79203 0.77909 1.18773 1.22397 1.21779 1.16998 0.86378 0.82697 0.76790 1.90825 1.14509 1.87202 1.50857 1.22087 0.95153 0.92793 1.13753 1.28560 0.96719 0.85308 0.94031 1.84636 1.26582 1.18858 1.62384 1.73746 0.92578 1.20555 1.13385 1.24526 0.94923 0.92319 1.10957 1.16673 0.83884 0.74451 0.74848 1.93233 1.96802 1.31045 1.93930 1.93288 1.88419 1.78635 1.54317 1.93254 1.77225 1.93068 1.50852 0.87302 0.88189 0.88934 0.85308 0.90113 0.77694 0.93661 0.96318 0.79465 0.94080 0.67924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 8.81 127.77 1.13 1.28 16 2 N -0.59 -9.96 2.83 -850.68 -2.41 -12.36 16 3 C 0.10 1.97 5.12 86.38 0.44 2.41 16 4 C 0.09 2.78 3.27 30.59 0.10 2.88 16 5 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 6 O -0.57 -21.07 12.12 -141.94 -1.72 -22.79 16 7 C 0.12 4.59 5.90 86.38 0.51 5.10 16 8 N -0.74 -38.02 5.55 -343.46 -1.91 -39.92 16 9 C -0.25 -13.80 9.99 84.04 0.84 -12.96 16 10 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 11 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 12 N -0.97 -60.77 13.06 21.65 0.28 -60.49 16 13 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 14 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 15 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 16 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 17 C 0.58 13.74 7.17 86.66 0.62 14.36 16 18 O -0.56 -17.88 14.07 2.99 0.04 -17.84 16 19 C -0.23 -4.26 6.26 -18.74 -0.12 -4.37 16 20 C 0.03 0.23 10.27 67.61 0.69 0.93 16 21 O 0.15 1.75 11.06 77.04 0.85 2.60 16 22 N -0.31 -6.10 11.85 -44.79 -0.53 -6.64 16 23 C -0.07 -1.53 6.83 45.16 0.31 -1.22 16 24 C 0.56 15.36 3.00 71.24 0.21 15.58 16 25 F -0.17 -4.44 17.19 44.97 0.77 -3.67 16 26 F -0.17 -5.26 16.75 44.97 0.75 -4.51 16 27 F -0.16 -4.70 16.98 44.97 0.76 -3.94 16 28 H 0.11 -0.32 7.75 -2.39 -0.02 -0.34 16 29 H 0.10 0.38 8.02 -2.39 -0.02 0.36 16 30 H 0.09 0.12 4.89 -2.39 -0.01 0.11 16 31 H 0.13 1.66 8.07 -2.39 -0.02 1.64 16 32 H 0.08 1.87 7.41 -2.39 -0.02 1.85 16 33 H 0.38 13.62 8.48 -74.06 -0.63 12.99 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.37 21.03 7.67 -92.71 -0.71 20.32 16 37 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.31 -1.64 4.83 -2.91 -0.01 -1.66 16 Total: -1.00 -83.76 342.11 3.96 -79.80 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -0.17 Total: 21.32 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 5.20 Total: 19.87 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -4.56 Total: -119.41 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.83 Total: -38.02 kcal Atomic # 9 Polarization: -14.40 SS G_CDS: 2.29 Total: -12.11 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -83.76 3.96 -79.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507494085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.482 kcal (2) G-P(sol) polarization free energy of solvation -83.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds