Wall clock time and date at job start Tue Mar 31 2020 19:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 119.52854 * 2 1 4 4 C 1.38543 * 119.26782 * 179.77543 * 3 2 1 5 5 C 1.39254 * 118.37429 * 0.49386 * 4 3 2 6 6 N 1.39794 * 120.50024 * 179.73308 * 5 4 3 7 7 C 1.34774 * 119.99955 * 17.19801 * 6 5 4 8 8 O 1.21374 * 119.99976 * 5.32521 * 7 6 5 9 9 C 1.49349 * 119.99691 * 185.32621 * 7 6 5 10 10 O 1.21359 * 120.00141 * 5.10419 * 9 7 6 11 11 N 1.34781 * 119.99702 * 185.10272 * 9 7 6 12 12 C 1.46497 * 119.99963 * 174.98000 * 11 9 7 13 13 C 1.52994 * 109.47291 * 185.11484 * 12 11 9 14 14 C 1.50706 * 115.55040 * 62.12124 * 13 12 11 15 15 H 1.08006 * 119.99772 * 269.49575 * 14 13 12 16 16 C 1.37871 * 120.00136 * 89.49599 * 14 13 12 17 17 N 1.31514 * 120.00087 * 180.73993 * 16 14 13 18 18 Si 1.86799 * 119.99943 * 0.73824 * 16 14 13 19 19 H 1.48508 * 109.47207 * 92.54312 * 18 16 14 20 20 H 1.48497 * 109.47191 * 212.53726 * 18 16 14 21 21 H 1.48497 * 109.47483 * 332.54014 * 18 16 14 22 22 C 1.52999 * 117.50049 * 276.45413 * 13 12 11 23 23 C 1.53000 * 117.50220 * 207.79210 * 13 12 11 24 24 C 1.39068 * 119.00252 * 359.74955 * 5 4 3 25 25 Cl 1.73604 * 119.68790 * 179.97438 * 24 5 4 26 26 N 1.31883 * 120.62689 * 0.02562 * 24 5 4 27 27 H 1.09002 * 109.47256 * 269.72266 * 1 2 3 28 28 H 1.09000 * 109.47448 * 29.72225 * 1 2 3 29 29 H 1.09000 * 109.47520 * 149.72434 * 1 2 3 30 30 H 1.08001 * 120.36239 * 0.02562 * 3 2 1 31 31 H 1.08005 * 120.81278 * 180.24318 * 4 3 2 32 32 H 0.97001 * 120.00028 * 197.20086 * 6 5 4 33 33 H 0.96996 * 119.99931 * 354.98188 * 11 9 7 34 34 H 1.09008 * 109.47203 * 305.11462 * 12 11 9 35 35 H 1.08998 * 109.47258 * 65.10986 * 12 11 9 36 36 H 0.97007 * 120.00254 * 179.97438 * 17 16 14 37 37 H 1.08999 * 117.49505 * 359.97438 * 22 13 12 38 38 H 1.08997 * 117.50091 * 145.02104 * 22 13 12 39 39 H 1.09004 * 117.50070 * 214.97960 * 23 13 12 40 40 H 1.09000 * 117.49488 * 359.97153 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2028 0.0000 4 6 3.5737 1.1965 0.0047 5 6 4.2299 -0.0317 -0.0012 6 7 5.6266 -0.0899 -0.0024 7 6 6.3465 0.9945 0.3471 8 8 5.7849 1.9901 0.7553 9 6 7.8354 0.9711 0.2321 10 8 8.3909 0.0120 -0.2621 11 7 8.5621 2.0154 0.6772 12 6 10.0254 1.9472 0.6659 13 6 10.5994 3.1977 1.3349 14 6 10.2361 3.3837 2.7856 15 1 9.3505 3.9410 3.0534 16 6 11.0342 2.8425 3.7710 17 7 10.7093 2.9923 5.0365 18 14 12.5770 1.8962 3.3085 19 1 13.7395 2.8204 3.2962 20 1 12.8127 0.8178 4.3017 21 1 12.4056 1.2984 1.9600 22 6 10.7431 4.4556 0.4758 23 6 11.9866 3.6641 0.8887 24 6 3.4749 -1.1996 -0.0063 25 17 4.2746 -2.7404 -0.0144 26 7 2.1571 -1.1477 -0.0060 27 1 -0.3634 -0.0050 1.0277 28 1 -0.3634 0.8924 -0.5095 29 1 -0.3634 -0.8875 -0.5181 30 1 1.6465 2.1371 0.0004 31 1 4.1311 2.1215 0.0088 32 1 6.0776 -0.9108 -0.2548 33 1 8.1162 2.8119 1.0050 34 1 10.3522 1.0613 1.2106 35 1 10.3786 1.8913 -0.3637 36 1 11.2706 2.6112 5.7298 37 1 10.4291 4.3921 -0.5660 38 1 10.5754 5.4176 0.9600 39 1 12.6363 4.1058 1.6443 40 1 12.4905 3.0797 0.1188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515204939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:52 Heat of formation + Delta-G solvation = -5.522068 kcal Electronic energy + Delta-G solvation = -25889.685227 eV Core-core repulsion = 21924.723535 eV Total energy + Delta-G solvation = -3964.961692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.45922 -40.14141 -38.63377 -37.20603 -37.03910 -35.78861 -33.70522 -32.53098 -32.20333 -32.08097 -28.13979 -27.18334 -25.62616 -24.15757 -24.00268 -22.28607 -21.82638 -20.27882 -19.63078 -18.74744 -17.70362 -17.18057 -16.90038 -16.39105 -16.08343 -15.80594 -15.27672 -15.04224 -14.95050 -14.57214 -14.17957 -14.11154 -13.64057 -13.31985 -13.28416 -12.86936 -12.84465 -12.60877 -12.50037 -12.20423 -11.88859 -11.62656 -11.51947 -11.30883 -11.23834 -10.95130 -10.57804 -10.32266 -10.19662 -9.90824 -9.73541 -9.40961 -9.31818 -8.79931 -8.66877 -8.62499 -8.47676 -6.22363 -4.28533 0.42374 0.81468 1.46128 1.50786 2.15557 3.12599 3.21620 3.33201 3.35203 3.37839 3.55168 4.03202 4.30132 4.32128 4.44012 4.55605 4.70091 4.85082 4.95892 5.04868 5.24843 5.26975 5.45408 5.52841 5.55672 5.78737 5.82789 5.87933 5.94365 6.02379 6.24081 6.27623 6.33402 6.58738 6.59862 6.74005 6.87201 6.97694 7.35119 7.40938 7.57778 7.75383 8.18237 8.33728 8.78461 9.39402 10.88715 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.002662 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.009939 B =10514.262064 C =10858.761957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.119 3.881 3 C -0.141 4.141 4 C -0.085 4.085 5 C 0.119 3.881 6 N -0.638 5.638 7 C 0.514 3.486 8 O -0.490 6.490 9 C 0.502 3.498 10 O -0.531 6.531 11 N -0.659 5.659 12 C 0.152 3.848 13 C -0.019 4.019 14 C -0.495 4.495 15 H 0.080 0.920 16 C 0.080 3.920 17 N -0.891 5.891 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.294 1.294 21 H -0.257 1.257 22 C -0.178 4.178 23 C -0.190 4.190 24 C 0.146 3.854 25 Cl -0.025 7.025 26 N -0.455 5.455 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.148 0.852 31 H 0.180 0.820 32 H 0.427 0.573 33 H 0.418 0.582 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.266 0.734 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.820 -4.946 -12.302 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.020 4.020 3 C -0.161 4.161 4 C -0.112 4.112 5 C 0.019 3.981 6 N -0.284 5.284 7 C 0.297 3.703 8 O -0.363 6.363 9 C 0.281 3.719 10 O -0.410 6.410 11 N -0.309 5.309 12 C 0.030 3.970 13 C -0.020 4.020 14 C -0.532 4.532 15 H 0.098 0.902 16 C -0.124 4.124 17 N -0.528 5.528 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.221 1.221 21 H -0.181 1.181 22 C -0.215 4.215 23 C -0.227 4.227 24 C -0.022 4.022 25 Cl 0.004 6.996 26 N -0.167 5.167 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.166 0.834 31 H 0.197 0.803 32 H 0.267 0.733 33 H 0.255 0.745 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.041 -5.836 -12.141 20.947 hybrid contribution 1.528 -0.075 0.082 1.532 sum -14.513 -5.911 -12.059 19.773 Atomic orbital electron populations 1.20705 0.87903 1.03716 1.03436 1.21182 0.97130 0.87088 0.96636 1.22059 0.94106 0.99596 1.00384 1.22313 0.94637 0.98176 0.96096 1.18373 0.83494 0.93737 1.02510 1.43203 1.03675 1.16738 1.64830 1.20721 0.89446 0.82896 0.77253 1.90654 1.71767 1.32335 1.41541 1.19529 0.86534 0.84566 0.81304 1.90759 1.71994 1.33869 1.44343 1.45705 1.08315 1.17387 1.59477 1.21380 0.76681 1.00206 0.98757 1.19603 0.95850 0.90579 0.95994 1.20196 1.11840 1.35651 0.85527 0.90164 1.25000 0.97685 0.95007 0.94665 1.69886 1.38667 1.44631 0.99569 0.86845 0.83558 0.79903 0.78906 1.20400 1.22050 1.18140 1.22907 1.02731 0.97463 0.98425 1.22948 0.91754 1.05056 1.02989 1.21239 0.89862 0.86285 1.04768 1.98418 1.76648 1.27944 1.96618 1.66784 1.06745 1.30300 1.12829 0.90122 0.90287 0.90310 0.83402 0.80332 0.73288 0.74510 0.90882 0.92843 0.92373 0.90756 0.89167 0.89021 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 10.17 36.00 0.37 -0.26 16 2 C 0.12 1.16 6.78 -82.57 -0.56 0.60 16 3 C -0.14 -1.30 9.73 -39.47 -0.38 -1.69 16 4 C -0.08 -0.98 8.93 -39.09 -0.35 -1.33 16 5 C 0.12 1.50 6.55 -83.54 -0.55 0.95 16 6 N -0.64 -8.37 5.26 -10.17 -0.05 -8.42 16 7 C 0.51 7.70 7.75 -11.63 -0.09 7.61 16 8 O -0.49 -7.73 13.32 5.48 0.07 -7.65 16 9 C 0.50 8.50 7.88 -11.63 -0.09 8.40 16 10 O -0.53 -9.76 16.51 5.49 0.09 -9.67 16 11 N -0.66 -11.77 5.41 -60.77 -0.33 -12.10 16 12 C 0.15 2.97 5.24 -4.05 -0.02 2.94 16 13 C -0.02 -0.40 0.85 -155.66 -0.13 -0.53 16 14 C -0.50 -12.66 9.19 -34.44 -0.32 -12.97 16 15 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 16 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 17 N -0.89 -25.96 13.96 55.43 0.77 -25.18 16 18 Si 0.88 20.67 24.75 -169.99 -4.21 16.46 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.26 -5.68 5.85 56.52 0.33 -5.35 16 22 C -0.18 -3.23 9.95 -26.69 -0.27 -3.49 16 23 C -0.19 -3.67 7.33 -26.69 -0.20 -3.87 16 24 C 0.15 1.82 7.30 -17.22 -0.13 1.70 16 25 Cl -0.02 -0.28 27.86 -51.86 -1.44 -1.73 16 26 N -0.46 -5.51 10.24 -6.45 -0.07 -5.57 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 31 H 0.18 2.15 5.37 -52.48 -0.28 1.87 16 32 H 0.43 5.26 7.09 -40.82 -0.29 4.97 16 33 H 0.42 7.35 7.85 -40.82 -0.32 7.03 16 34 H 0.07 1.55 7.16 -51.92 -0.37 1.18 16 35 H 0.05 0.95 8.11 -51.93 -0.42 0.53 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 39 H 0.09 1.88 6.87 -51.93 -0.36 1.52 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 356.14 15.07 5.37 5.37 Total: -1.00 -29.85 356.14 -7.23 -37.08 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -4.63 Total: 11.30 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.81 Total: 0.13 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.33 Total: -51.28 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.16 Total: -17.33 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.21 Total: 16.46 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.44 Total: -1.73 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.85 -7.23 -37.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515204939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.554 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds