Wall clock time and date at job start Tue Mar 31 2020 19:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 119.52854 * 2 1 4 4 C 1.38543 * 119.26782 * 179.77543 * 3 2 1 5 5 C 1.39254 * 118.37429 * 0.49386 * 4 3 2 6 6 N 1.39794 * 120.50024 * 179.73308 * 5 4 3 7 7 C 1.34774 * 119.99955 * 17.19801 * 6 5 4 8 8 O 1.21374 * 119.99976 * 5.32521 * 7 6 5 9 9 C 1.49349 * 119.99691 * 185.32621 * 7 6 5 10 10 O 1.21359 * 120.00141 * 5.10419 * 9 7 6 11 11 N 1.34781 * 119.99702 * 185.10272 * 9 7 6 12 12 C 1.46497 * 119.99963 * 174.98000 * 11 9 7 13 13 C 1.52994 * 109.47291 * 185.11484 * 12 11 9 14 14 C 1.50706 * 115.55040 * 62.12124 * 13 12 11 15 15 H 1.08006 * 119.99772 * 269.49575 * 14 13 12 16 16 C 1.37871 * 120.00136 * 89.49599 * 14 13 12 17 17 N 1.31514 * 120.00087 * 180.73993 * 16 14 13 18 18 Si 1.86799 * 119.99943 * 0.73824 * 16 14 13 19 19 H 1.48508 * 109.47207 * 92.54312 * 18 16 14 20 20 H 1.48497 * 109.47191 * 212.53726 * 18 16 14 21 21 H 1.48497 * 109.47483 * 332.54014 * 18 16 14 22 22 C 1.52999 * 117.50049 * 276.45413 * 13 12 11 23 23 C 1.53000 * 117.50220 * 207.79210 * 13 12 11 24 24 C 1.39068 * 119.00252 * 359.74955 * 5 4 3 25 25 Cl 1.73604 * 119.68790 * 179.97438 * 24 5 4 26 26 N 1.31883 * 120.62689 * 0.02562 * 24 5 4 27 27 H 1.09002 * 109.47256 * 269.72266 * 1 2 3 28 28 H 1.09000 * 109.47448 * 29.72225 * 1 2 3 29 29 H 1.09000 * 109.47520 * 149.72434 * 1 2 3 30 30 H 1.08001 * 120.36239 * 0.02562 * 3 2 1 31 31 H 1.08005 * 120.81278 * 180.24318 * 4 3 2 32 32 H 0.97001 * 120.00028 * 197.20086 * 6 5 4 33 33 H 0.96996 * 119.99931 * 354.98188 * 11 9 7 34 34 H 1.09008 * 109.47203 * 305.11462 * 12 11 9 35 35 H 1.08998 * 109.47258 * 65.10986 * 12 11 9 36 36 H 0.97007 * 120.00254 * 179.97438 * 17 16 14 37 37 H 1.08999 * 117.49505 * 359.97438 * 22 13 12 38 38 H 1.08997 * 117.50091 * 145.02104 * 22 13 12 39 39 H 1.09004 * 117.50070 * 214.97960 * 23 13 12 40 40 H 1.09000 * 117.49488 * 359.97153 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2028 0.0000 4 6 3.5737 1.1965 0.0047 5 6 4.2299 -0.0317 -0.0012 6 7 5.6266 -0.0899 -0.0024 7 6 6.3465 0.9945 0.3471 8 8 5.7849 1.9901 0.7553 9 6 7.8354 0.9711 0.2321 10 8 8.3909 0.0120 -0.2621 11 7 8.5621 2.0154 0.6772 12 6 10.0254 1.9472 0.6659 13 6 10.5994 3.1977 1.3349 14 6 10.2361 3.3837 2.7856 15 1 9.3505 3.9410 3.0534 16 6 11.0342 2.8425 3.7710 17 7 10.7093 2.9923 5.0365 18 14 12.5770 1.8962 3.3085 19 1 13.7395 2.8204 3.2962 20 1 12.8127 0.8178 4.3017 21 1 12.4056 1.2984 1.9600 22 6 10.7431 4.4556 0.4758 23 6 11.9866 3.6641 0.8887 24 6 3.4749 -1.1996 -0.0063 25 17 4.2746 -2.7404 -0.0144 26 7 2.1571 -1.1477 -0.0060 27 1 -0.3634 -0.0050 1.0277 28 1 -0.3634 0.8924 -0.5095 29 1 -0.3634 -0.8875 -0.5181 30 1 1.6465 2.1371 0.0004 31 1 4.1311 2.1215 0.0088 32 1 6.0776 -0.9108 -0.2548 33 1 8.1162 2.8119 1.0050 34 1 10.3522 1.0613 1.2106 35 1 10.3786 1.8913 -0.3637 36 1 11.2706 2.6112 5.7298 37 1 10.4291 4.3921 -0.5660 38 1 10.5754 5.4176 0.9600 39 1 12.6363 4.1058 1.6443 40 1 12.4905 3.0797 0.1188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515204939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:52 Heat of formation + Delta-G solvation = -26.766676 kcal Electronic energy + Delta-G solvation = -25890.606463 eV Core-core repulsion = 21924.723535 eV Total energy + Delta-G solvation = -3965.882927 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.52109 -41.22232 -39.91703 -38.75620 -37.93614 -36.86084 -35.12757 -34.22172 -33.35664 -32.90552 -29.27691 -28.39400 -27.44969 -25.29038 -24.91841 -23.43316 -23.14683 -21.52255 -21.17581 -20.07863 -18.89176 -18.26384 -18.05234 -17.91914 -17.29842 -16.94923 -16.90430 -16.27669 -16.04915 -15.68777 -15.43893 -15.29912 -14.89049 -14.74696 -14.44997 -14.28302 -13.95016 -13.76245 -13.54697 -13.11700 -13.08038 -12.80945 -12.73822 -12.69668 -12.48594 -12.19192 -12.17859 -11.98649 -11.58358 -11.24370 -11.01859 -10.80201 -10.66524 -10.56716 -10.33926 -10.13300 -9.39658 -8.29918 -6.38191 -0.51830 -0.06504 0.35305 0.57593 0.97537 1.35305 1.41074 1.50852 1.91735 2.33246 2.36534 2.47272 3.04171 3.08743 3.26614 3.35186 3.47101 3.79397 3.82530 3.97658 4.22489 4.33399 4.39072 4.48673 4.49732 4.70995 4.79428 4.82925 4.85850 4.88242 4.97819 5.09463 5.17240 5.19029 5.28504 5.49913 5.50302 5.64429 5.68054 6.15885 6.27399 6.43580 6.56979 6.71815 6.79910 7.32921 8.84809 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.002662 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.009939 B =10514.262064 C =10858.761957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.118 3.882 3 C -0.131 4.131 4 C -0.094 4.094 5 C 0.097 3.903 6 N -0.628 5.628 7 C 0.519 3.481 8 O -0.501 6.501 9 C 0.505 3.495 10 O -0.545 6.545 11 N -0.664 5.664 12 C 0.160 3.840 13 C -0.045 4.045 14 C -0.484 4.484 15 H 0.041 0.959 16 C 0.022 3.978 17 N -0.946 5.946 18 Si 0.934 3.066 19 H -0.268 1.268 20 H -0.306 1.306 21 H -0.231 1.231 22 C -0.154 4.154 23 C -0.187 4.187 24 C 0.137 3.863 25 Cl -0.025 7.025 26 N -0.474 5.474 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.184 0.816 31 H 0.174 0.826 32 H 0.430 0.570 33 H 0.418 0.582 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.264 0.736 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.617 -4.849 -14.655 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.021 4.021 3 C -0.151 4.151 4 C -0.121 4.121 5 C -0.002 4.002 6 N -0.275 5.275 7 C 0.302 3.698 8 O -0.376 6.376 9 C 0.284 3.716 10 O -0.424 6.424 11 N -0.313 5.313 12 C 0.037 3.963 13 C -0.046 4.046 14 C -0.521 4.521 15 H 0.059 0.941 16 C -0.176 4.176 17 N -0.585 5.585 18 Si 0.759 3.241 19 H -0.194 1.194 20 H -0.233 1.233 21 H -0.153 1.153 22 C -0.191 4.191 23 C -0.224 4.224 24 C -0.030 4.030 25 Cl 0.003 6.997 26 N -0.186 5.186 27 H 0.109 0.891 28 H 0.125 0.875 29 H 0.096 0.904 30 H 0.202 0.798 31 H 0.191 0.809 32 H 0.270 0.730 33 H 0.255 0.745 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.857 -5.747 -14.536 22.989 hybrid contribution 1.571 -0.045 0.799 1.763 sum -15.286 -5.793 -13.738 21.353 Atomic orbital electron populations 1.20848 0.85169 1.05094 1.04464 1.21886 0.98873 0.86607 0.94699 1.22443 0.93167 1.00996 0.98445 1.22407 0.95822 0.97493 0.96381 1.18500 0.82944 0.94444 1.04271 1.43059 1.04119 1.16137 1.64154 1.20277 0.88543 0.83334 0.77664 1.90659 1.71626 1.32861 1.42439 1.19775 0.87386 0.83904 0.80521 1.90744 1.72601 1.34195 1.44871 1.45689 1.08002 1.17775 1.59877 1.21188 0.77410 0.98203 0.99539 1.19453 0.98229 0.93049 0.93901 1.20379 1.09864 1.33471 0.88404 0.94095 1.25811 1.00963 0.96361 0.94448 1.70038 1.40453 1.47143 1.00890 0.85973 0.80133 0.78496 0.79490 1.19379 1.23348 1.15345 1.22940 1.01079 0.95669 0.99449 1.23030 0.91126 1.05060 1.03216 1.21305 0.90220 0.86289 1.05197 1.98411 1.76732 1.27896 1.96642 1.66871 1.06504 1.31599 1.13665 0.89061 0.87502 0.90404 0.79849 0.80917 0.73010 0.74530 0.92973 0.90313 0.92689 0.87418 0.89857 0.90396 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.17 71.24 0.72 -0.20 16 2 C 0.12 2.05 6.78 42.55 0.29 2.34 16 3 C -0.13 -2.09 9.73 22.34 0.22 -1.87 16 4 C -0.09 -2.06 8.93 22.59 0.20 -1.86 16 5 C 0.10 2.41 6.55 38.31 0.25 2.66 16 6 N -0.63 -16.38 5.26 -304.44 -1.60 -17.98 16 7 C 0.52 15.47 7.75 87.24 0.68 16.15 16 8 O -0.50 -15.78 13.32 -3.32 -0.04 -15.82 16 9 C 0.50 16.81 7.88 87.24 0.69 17.50 16 10 O -0.54 -19.57 16.51 -3.27 -0.05 -19.63 16 11 N -0.66 -23.27 5.41 -464.52 -2.51 -25.78 16 12 C 0.16 5.92 5.24 86.38 0.45 6.38 16 13 C -0.05 -1.82 0.85 -52.93 -0.04 -1.87 16 14 C -0.48 -25.17 9.19 25.60 0.24 -24.93 16 15 H 0.04 2.39 8.06 -2.91 -0.02 2.36 16 16 C 0.02 1.22 5.47 84.65 0.46 1.69 16 17 N -0.95 -57.26 13.96 21.44 0.30 -56.96 16 18 Si 0.93 42.52 24.75 68.60 1.70 44.22 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 H -0.31 -14.43 7.11 99.48 0.71 -13.73 16 21 H -0.23 -9.42 5.85 99.48 0.58 -8.84 16 22 C -0.15 -5.16 9.95 30.62 0.30 -4.86 16 23 C -0.19 -6.66 7.33 30.62 0.22 -6.43 16 24 C 0.14 3.34 7.30 84.88 0.62 3.96 16 25 Cl -0.03 -0.57 27.86 -2.72 -0.08 -0.65 16 26 N -0.47 -10.92 10.24 -174.32 -1.79 -12.71 16 27 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.11 0.43 8.07 -2.39 -0.02 0.41 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.18 1.54 8.06 -2.91 -0.02 1.51 16 31 H 0.17 4.03 5.37 -2.92 -0.02 4.01 16 32 H 0.43 10.55 7.09 -92.71 -0.66 9.90 16 33 H 0.42 14.68 7.85 -92.71 -0.73 13.95 16 34 H 0.05 2.15 7.16 -2.38 -0.02 2.13 16 35 H 0.08 2.54 8.11 -2.39 -0.02 2.52 16 36 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 37 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.08 3.01 6.87 -2.39 -0.02 3.00 16 40 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -66.41 356.14 0.83 -65.58 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -0.39 Total: 31.09 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 5.30 Total: 8.63 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -5.60 Total: -113.43 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.10 Total: -35.45 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.70 Total: 44.22 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.65 kcal Total: -66.41 0.83 -65.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515204939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.812 kcal (2) G-P(sol) polarization free energy of solvation -66.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds