Wall clock time and date at job start Tue Mar 31 2020 19:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31133 * 126.55206 * 2 1 4 4 C 1.34496 * 105.61569 * 180.12432 * 3 2 1 5 5 C 1.50697 * 126.28493 * 179.90450 * 4 3 2 6 6 H 1.08997 * 109.47427 * 344.71357 * 5 4 3 7 7 N 1.46508 * 109.46862 * 224.71029 * 5 4 3 8 8 C 1.34773 * 119.99776 * 85.00074 * 7 5 4 9 9 O 1.21274 * 120.00051 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99554 * 179.97438 * 8 7 5 11 11 S 1.81006 * 109.46853 * 180.02562 * 10 8 7 12 12 C 1.76201 * 99.99711 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00529 * 359.97438 * 12 11 10 14 14 C 1.38803 * 119.99827 * 180.02562 * 12 11 10 15 15 N 1.31628 * 120.00029 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99783 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46736 * 90.00663 * 16 14 12 18 18 H 1.48502 * 109.47216 * 210.00082 * 16 14 12 19 19 H 1.48499 * 109.47466 * 330.00464 * 16 14 12 20 20 C 1.50703 * 109.47210 * 104.71554 * 5 4 3 21 21 C 1.39868 * 126.04299 * 79.99096 * 20 5 4 22 22 N 1.30837 * 108.20148 * 180.02562 * 21 20 5 23 23 N 1.40081 * 108.20828 * 0.02562 * 22 21 20 24 24 C 1.46494 * 126.04084 * 180.26238 * 23 22 21 25 25 C 1.34954 * 107.92384 * 0.02562 * 23 22 21 26 26 N 1.29949 * 107.42115 * 359.63958 * 4 3 2 27 27 O 1.21295 * 110.25643 * 0.22617 * 26 4 3 28 28 H 1.09000 * 109.47275 * 180.25005 * 1 2 3 29 29 H 1.09003 * 109.47125 * 300.25150 * 1 2 3 30 30 H 1.08998 * 109.47304 * 60.25359 * 1 2 3 31 31 H 0.96999 * 119.99465 * 264.99972 * 7 5 4 32 32 H 1.08991 * 109.47500 * 300.00088 * 10 8 7 33 33 H 1.08999 * 109.46944 * 60.00899 * 10 8 7 34 34 H 0.96999 * 119.99543 * 179.97438 * 15 14 12 35 35 H 1.08001 * 125.89990 * 359.97438 * 21 20 5 36 36 H 1.09007 * 109.47152 * 269.69483 * 24 23 22 37 37 H 1.09004 * 109.47324 * 29.69107 * 24 23 22 38 38 H 1.08997 * 109.47734 * 149.69123 * 24 23 22 39 39 H 1.07999 * 126.12426 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5728 -0.0028 5 6 4.8111 1.3887 -0.0060 6 1 4.5793 2.4188 -0.2766 7 7 5.7508 0.8274 -0.9798 8 6 5.6706 1.1847 -2.2769 9 8 4.8208 1.9711 -2.6378 10 6 6.6376 0.6078 -3.2784 11 16 6.2757 1.2769 -4.9209 12 6 7.5177 0.4581 -5.8652 13 1 8.2047 -0.2202 -5.3812 14 6 7.6139 0.6856 -7.2310 15 7 8.5413 0.0736 -7.9366 16 14 6.4260 1.8594 -8.0682 17 1 6.9922 3.2321 -8.0512 18 1 6.2129 1.4293 -9.4735 19 1 5.1288 1.8500 -7.3455 20 6 5.4321 1.3576 1.3668 21 6 6.2070 0.3205 1.8962 22 7 6.5653 0.6562 3.1090 23 7 6.0283 1.9190 3.3903 24 6 6.1932 2.6670 4.6391 25 6 5.3366 2.3272 2.3058 26 7 3.4644 -0.7242 0.0035 27 8 2.3029 -1.0736 0.0052 28 1 -0.3634 -1.0276 0.0045 29 1 -0.3633 0.5177 0.8877 30 1 -0.3634 0.5099 -0.8922 31 1 6.4307 0.1988 -0.6910 32 1 7.6559 0.8731 -2.9948 33 1 6.5366 -0.4773 -3.2975 34 1 8.6082 0.2324 -8.8911 35 1 6.4645 -0.5989 1.3914 36 1 5.3847 2.4125 5.3245 37 1 7.1496 2.4088 5.0938 38 1 6.1679 3.7361 4.4284 39 1 4.8037 3.2612 2.2049 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556797571.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:46 Heat of formation + Delta-G solvation = 118.699966 kcal Electronic energy + Delta-G solvation = -25892.361287 eV Core-core repulsion = 21967.122724 eV Total energy + Delta-G solvation = -3925.238563 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.61051 -41.64958 -39.38737 -36.43569 -35.14252 -33.43252 -33.16694 -32.42530 -31.28920 -29.56341 -28.95532 -27.61588 -26.03223 -25.56781 -23.69492 -22.21779 -21.58360 -20.61764 -20.02401 -18.31628 -17.96502 -17.70221 -17.22347 -16.43643 -16.05285 -15.71763 -15.31391 -14.97049 -14.88928 -14.65136 -14.16929 -13.86710 -13.79684 -13.68084 -13.41665 -13.33854 -13.01040 -12.87233 -12.80919 -12.76385 -12.19542 -12.03883 -11.63548 -11.25818 -11.11111 -10.99902 -10.92415 -10.61256 -10.01174 -9.84459 -9.79165 -9.59472 -9.29318 -8.98824 -8.87764 -8.49487 -6.90767 -6.27535 -3.99262 1.10646 1.47572 2.06787 2.13414 2.38954 2.73678 2.76396 2.90322 3.22422 3.34034 3.51380 3.56639 3.79738 4.04005 4.12708 4.34253 4.46675 4.65653 4.71446 4.74269 4.85221 4.87048 4.97123 4.98081 5.00409 5.11495 5.14842 5.28925 5.35452 5.45944 5.66334 5.72682 5.77910 5.94287 6.02692 6.21180 6.36476 6.57186 7.29910 7.51931 7.95655 8.14277 8.40683 8.43698 9.18553 10.81757 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.003080 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.709689 B = 9087.515947 C =10624.609789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.171 3.829 3 N -0.472 5.472 4 C 0.172 3.828 5 C 0.325 3.675 6 H 0.123 0.877 7 N -0.722 5.722 8 C 0.534 3.466 9 O -0.511 6.511 10 C -0.123 4.123 11 S -0.140 6.140 12 C -0.521 4.521 13 H 0.089 0.911 14 C 0.096 3.904 15 N -0.880 5.880 16 Si 0.856 3.144 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 C -0.251 4.251 21 C 0.070 3.930 22 N -0.292 5.292 23 N -0.374 5.374 24 C 0.101 3.899 25 C 0.087 3.913 26 N -0.370 5.370 27 O 0.075 5.925 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.404 0.596 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.271 0.729 35 H 0.185 0.815 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.494 2.661 26.286 29.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.050 4.050 3 N -0.206 5.206 4 C -0.103 4.103 5 C 0.215 3.785 6 H 0.140 0.860 7 N -0.377 5.377 8 C 0.320 3.680 9 O -0.384 6.384 10 C -0.273 4.273 11 S 0.086 5.914 12 C -0.668 4.668 13 H 0.107 0.893 14 C -0.113 4.113 15 N -0.517 5.517 16 Si 0.681 3.319 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 C -0.265 4.265 21 C -0.117 4.117 22 N -0.112 5.112 23 N -0.155 5.155 24 C -0.040 4.040 25 C -0.061 4.061 26 N -0.077 5.077 27 O 0.016 5.984 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.240 0.760 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.201 0.799 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -12.341 3.597 26.698 29.632 hybrid contribution 0.380 -0.650 -0.772 1.078 sum -11.961 2.947 25.926 28.704 Atomic orbital electron populations 1.20353 0.80391 1.05445 1.05573 1.28792 0.98892 0.80845 0.96433 1.71809 1.00064 1.28904 1.19867 1.26153 0.95323 0.88489 1.00347 1.16752 0.80628 0.96287 0.84783 0.85960 1.45937 1.35196 1.49213 1.07335 1.20402 0.84770 0.80886 0.81943 1.90721 1.35840 1.33387 1.78477 1.23270 1.01128 1.04375 0.98562 1.84776 1.46953 1.61710 0.97954 1.22317 1.17508 1.31329 0.95678 0.89329 1.24711 0.95088 0.95284 0.96223 1.69940 1.32400 1.41608 1.07751 0.86739 0.83543 0.81625 0.79967 1.19182 1.19942 1.15938 1.19694 1.11392 0.97952 0.97422 1.23715 0.96637 0.99326 0.92041 1.77424 1.21326 0.95615 1.16855 1.48514 1.39494 1.14593 1.12917 1.21908 1.04133 0.95330 0.82644 1.22303 0.96761 0.99998 0.87072 1.74548 0.97116 1.15646 1.20342 1.85291 1.11587 1.35844 1.65679 0.88626 0.88090 0.87819 0.76025 0.88177 0.88300 0.91944 0.79859 0.90607 0.89043 0.89175 0.80190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.32 10.51 36.00 0.38 0.06 16 2 C 0.17 1.91 8.51 -13.06 -0.11 1.80 16 3 N -0.47 -6.58 11.55 -9.87 -0.11 -6.70 16 4 C 0.17 2.50 7.00 -156.37 -1.09 1.40 16 5 C 0.32 4.33 2.94 -70.23 -0.21 4.12 16 6 H 0.12 1.73 7.57 -51.93 -0.39 1.34 16 7 N -0.72 -10.23 5.04 -56.07 -0.28 -10.51 16 8 C 0.53 9.84 7.80 -10.99 -0.09 9.76 16 9 O -0.51 -11.22 15.52 5.56 0.09 -11.13 16 10 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 11 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 12 C -0.52 -15.17 10.04 30.94 0.31 -14.86 16 13 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 14 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 15 N -0.88 -26.82 13.97 55.49 0.78 -26.04 16 16 Si 0.86 21.98 27.74 -169.99 -4.71 17.26 16 17 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 20 C -0.25 -2.81 5.07 -105.05 -0.53 -3.35 16 21 C 0.07 0.78 11.20 -17.37 -0.19 0.59 16 22 N -0.29 -3.42 12.58 30.62 0.39 -3.03 16 23 N -0.37 -3.45 4.01 -68.16 -0.27 -3.72 16 24 C 0.10 0.47 11.47 59.84 0.69 1.16 16 25 C 0.09 0.80 11.40 -17.22 -0.20 0.60 16 26 N -0.37 -5.41 12.15 30.90 0.38 -5.03 16 27 O 0.08 0.97 11.31 18.09 0.20 1.18 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.40 4.73 7.63 -40.82 -0.31 4.42 16 32 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 33 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 34 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.18 1.77 7.72 -52.49 -0.41 1.37 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -39.16 363.43 -5.49 -44.65 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.49 Total: 1.41 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -0.92 Total: 1.79 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.87 Total: -55.03 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.29 Total: -9.95 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.26 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -39.16 -5.49 -44.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556797571.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.345 kcal (2) G-P(sol) polarization free energy of solvation -39.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds