Wall clock time and date at job start Tue Mar 31 2020 19:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31133 * 126.55206 * 2 1 4 4 C 1.34496 * 105.61569 * 180.12432 * 3 2 1 5 5 C 1.50697 * 126.28493 * 179.90450 * 4 3 2 6 6 H 1.08997 * 109.47427 * 344.71357 * 5 4 3 7 7 N 1.46508 * 109.46862 * 224.71029 * 5 4 3 8 8 C 1.34773 * 119.99776 * 85.00074 * 7 5 4 9 9 O 1.21274 * 120.00051 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99554 * 179.97438 * 8 7 5 11 11 S 1.81006 * 109.46853 * 180.02562 * 10 8 7 12 12 C 1.76201 * 99.99711 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00529 * 359.97438 * 12 11 10 14 14 C 1.38803 * 119.99827 * 180.02562 * 12 11 10 15 15 N 1.31628 * 120.00029 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99783 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46736 * 90.00663 * 16 14 12 18 18 H 1.48502 * 109.47216 * 210.00082 * 16 14 12 19 19 H 1.48499 * 109.47466 * 330.00464 * 16 14 12 20 20 C 1.50703 * 109.47210 * 104.71554 * 5 4 3 21 21 C 1.39868 * 126.04299 * 79.99096 * 20 5 4 22 22 N 1.30837 * 108.20148 * 180.02562 * 21 20 5 23 23 N 1.40081 * 108.20828 * 0.02562 * 22 21 20 24 24 C 1.46494 * 126.04084 * 180.26238 * 23 22 21 25 25 C 1.34954 * 107.92384 * 0.02562 * 23 22 21 26 26 N 1.29949 * 107.42115 * 359.63958 * 4 3 2 27 27 O 1.21295 * 110.25643 * 0.22617 * 26 4 3 28 28 H 1.09000 * 109.47275 * 180.25005 * 1 2 3 29 29 H 1.09003 * 109.47125 * 300.25150 * 1 2 3 30 30 H 1.08998 * 109.47304 * 60.25359 * 1 2 3 31 31 H 0.96999 * 119.99465 * 264.99972 * 7 5 4 32 32 H 1.08991 * 109.47500 * 300.00088 * 10 8 7 33 33 H 1.08999 * 109.46944 * 60.00899 * 10 8 7 34 34 H 0.96999 * 119.99543 * 179.97438 * 15 14 12 35 35 H 1.08001 * 125.89990 * 359.97438 * 21 20 5 36 36 H 1.09007 * 109.47152 * 269.69483 * 24 23 22 37 37 H 1.09004 * 109.47324 * 29.69107 * 24 23 22 38 38 H 1.08997 * 109.47734 * 149.69123 * 24 23 22 39 39 H 1.07999 * 126.12426 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5728 -0.0028 5 6 4.8111 1.3887 -0.0060 6 1 4.5793 2.4188 -0.2766 7 7 5.7508 0.8274 -0.9798 8 6 5.6706 1.1847 -2.2769 9 8 4.8208 1.9711 -2.6378 10 6 6.6376 0.6078 -3.2784 11 16 6.2757 1.2769 -4.9209 12 6 7.5177 0.4581 -5.8652 13 1 8.2047 -0.2202 -5.3812 14 6 7.6139 0.6856 -7.2310 15 7 8.5413 0.0736 -7.9366 16 14 6.4260 1.8594 -8.0682 17 1 6.9922 3.2321 -8.0512 18 1 6.2129 1.4293 -9.4735 19 1 5.1288 1.8500 -7.3455 20 6 5.4321 1.3576 1.3668 21 6 6.2070 0.3205 1.8962 22 7 6.5653 0.6562 3.1090 23 7 6.0283 1.9190 3.3903 24 6 6.1932 2.6670 4.6391 25 6 5.3366 2.3272 2.3058 26 7 3.4644 -0.7242 0.0035 27 8 2.3029 -1.0736 0.0052 28 1 -0.3634 -1.0276 0.0045 29 1 -0.3633 0.5177 0.8877 30 1 -0.3634 0.5099 -0.8922 31 1 6.4307 0.1988 -0.6910 32 1 7.6559 0.8731 -2.9948 33 1 6.5366 -0.4773 -3.2975 34 1 8.6082 0.2324 -8.8911 35 1 6.4645 -0.5989 1.3914 36 1 5.3847 2.4125 5.3245 37 1 7.1496 2.4088 5.0938 38 1 6.1679 3.7361 4.4284 39 1 4.8037 3.2612 2.2049 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556797571.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:46 Heat of formation + Delta-G solvation = 87.577096 kcal Electronic energy + Delta-G solvation = -25893.710876 eV Core-core repulsion = 21967.122724 eV Total energy + Delta-G solvation = -3926.588152 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.59646 -42.42818 -40.78647 -37.53142 -36.17734 -34.68586 -34.19263 -34.09855 -32.33782 -30.79787 -29.68136 -28.50855 -27.84620 -26.83800 -24.66917 -23.18830 -22.41643 -21.60676 -21.13261 -19.96174 -19.22657 -18.64016 -18.33991 -17.86228 -17.18631 -17.02589 -16.67430 -16.39328 -15.91706 -15.58788 -15.40793 -15.19662 -14.99869 -14.85903 -14.42859 -14.17101 -13.98798 -13.77286 -13.66713 -13.44128 -13.36299 -13.35664 -13.02074 -12.93874 -12.72882 -12.52039 -12.10206 -11.88174 -11.74661 -11.22124 -11.18034 -10.87580 -10.58111 -10.57166 -10.51673 -9.65636 -9.01845 -8.52447 -6.23821 0.18610 0.72831 0.92766 1.14117 1.30860 1.35382 1.43171 1.49731 1.58227 1.61127 1.97418 2.07649 2.24366 2.65770 2.81258 2.85692 3.11006 3.41993 3.73422 3.79486 3.98132 4.01890 4.17860 4.20914 4.30960 4.41819 4.42148 4.55647 4.64843 4.65411 4.68591 4.69967 4.81935 5.00769 5.13243 5.18327 5.41255 5.69905 5.95194 6.10740 6.26731 6.53378 6.92292 7.00320 7.18826 8.60153 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.003080 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.709689 B = 9087.515947 C =10624.609789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.181 3.819 3 N -0.503 5.503 4 C 0.160 3.840 5 C 0.331 3.669 6 H 0.113 0.887 7 N -0.702 5.702 8 C 0.541 3.459 9 O -0.549 6.549 10 C -0.111 4.111 11 S -0.168 6.168 12 C -0.530 4.530 13 H 0.062 0.938 14 C 0.045 3.955 15 N -0.917 5.917 16 Si 0.915 3.085 17 H -0.260 1.260 18 H -0.258 1.258 19 H -0.237 1.237 20 C -0.270 4.270 21 C 0.062 3.938 22 N -0.321 5.321 23 N -0.371 5.371 24 C 0.090 3.910 25 C 0.098 3.902 26 N -0.391 5.391 27 O 0.069 5.931 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.417 0.583 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.277 0.723 35 H 0.189 0.811 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.164 3.664 27.960 31.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.038 4.038 3 N -0.237 5.237 4 C -0.115 4.115 5 C 0.222 3.778 6 H 0.131 0.869 7 N -0.356 5.356 8 C 0.327 3.673 9 O -0.426 6.426 10 C -0.262 4.262 11 S 0.058 5.942 12 C -0.678 4.678 13 H 0.080 0.920 14 C -0.160 4.160 15 N -0.555 5.555 16 Si 0.737 3.263 17 H -0.185 1.185 18 H -0.183 1.183 19 H -0.161 1.161 20 C -0.284 4.284 21 C -0.124 4.124 22 N -0.143 5.143 23 N -0.152 5.152 24 C -0.049 4.049 25 C -0.052 4.052 26 N -0.100 5.100 27 O 0.010 5.990 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.130 0.870 31 H 0.255 0.745 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.087 0.913 35 H 0.206 0.794 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -13.997 4.573 28.432 32.019 hybrid contribution 0.865 -1.001 -1.080 1.708 sum -13.132 3.572 27.352 30.551 Atomic orbital electron populations 1.20743 0.76434 1.07624 1.06882 1.29887 1.00583 0.79676 0.93679 1.71812 1.00197 1.30092 1.21638 1.26335 0.95945 0.88690 1.00507 1.16728 0.80261 0.95420 0.85385 0.86883 1.45708 1.35292 1.48501 1.06086 1.20044 0.83899 0.80451 0.82909 1.90708 1.37278 1.35274 1.79306 1.23249 1.02668 1.04805 0.95473 1.84658 1.45938 1.62028 1.01527 1.22456 1.17883 1.31016 0.96409 0.92009 1.25576 0.96666 0.96829 0.96927 1.70018 1.33973 1.43048 1.08463 0.85861 0.81254 0.79727 0.79491 1.18479 1.18257 1.16113 1.19567 1.12746 0.99111 0.96936 1.23841 0.96705 0.99673 0.92147 1.77368 1.22522 0.97252 1.17116 1.48877 1.38421 1.13889 1.13966 1.22301 1.04819 0.96488 0.81275 1.22763 0.95707 1.00355 0.86348 1.74519 0.98167 1.15815 1.21476 1.85248 1.11394 1.36389 1.65941 0.86093 0.85845 0.86981 0.74532 0.86352 0.87135 0.91316 0.79388 0.89249 0.88828 0.86323 0.77158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 71.23 0.75 0.27 16 2 C 0.18 3.80 8.51 88.38 0.75 4.55 16 3 N -0.50 -13.62 11.55 -303.17 -3.50 -17.13 16 4 C 0.16 4.58 7.00 138.46 0.97 5.55 16 5 C 0.33 8.63 2.94 43.50 0.13 8.76 16 6 H 0.11 3.17 7.57 -2.39 -0.02 3.15 16 7 N -0.70 -19.46 5.04 -449.69 -2.27 -21.73 16 8 C 0.54 19.71 7.80 87.66 0.68 20.39 16 9 O -0.55 -24.05 15.52 -3.01 -0.05 -24.10 16 10 C -0.11 -4.37 6.16 71.24 0.44 -3.93 16 11 S -0.17 -8.64 18.55 -56.49 -1.05 -9.68 16 12 C -0.53 -31.32 10.04 67.96 0.68 -30.64 16 13 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 14 C 0.05 2.70 5.50 84.86 0.47 3.16 16 15 N -0.92 -56.46 13.97 21.65 0.30 -56.16 16 16 Si 0.91 45.37 27.74 68.60 1.90 47.27 16 17 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 20 C -0.27 -5.78 5.07 -20.14 -0.10 -5.88 16 21 C 0.06 1.37 11.20 85.24 0.95 2.32 16 22 N -0.32 -7.23 12.58 -57.02 -0.72 -7.95 16 23 N -0.37 -6.11 4.01 -369.57 -1.48 -7.60 16 24 C 0.09 0.62 11.47 127.77 1.47 2.08 16 25 C 0.10 1.60 11.40 83.54 0.95 2.56 16 26 N -0.39 -11.31 12.15 -60.31 -0.73 -12.04 16 27 O 0.07 1.72 11.31 74.79 0.85 2.56 16 28 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.42 9.44 7.63 -92.71 -0.71 8.74 16 32 H 0.12 4.23 8.14 -2.40 -0.02 4.21 16 33 H 0.11 4.10 8.14 -2.40 -0.02 4.09 16 34 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 35 H 0.19 3.62 7.72 -2.91 -0.02 3.60 16 36 H 0.09 0.40 8.14 -2.38 -0.02 0.39 16 37 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.21 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -85.97 363.43 1.76 -84.22 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.36 Total: 13.14 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 8.14 Total: 9.19 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -8.40 Total: -122.59 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: 0.80 Total: -21.54 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.90 Total: 47.27 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.05 Total: -9.68 kcal Total: -85.97 1.76 -84.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556797571.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.793 kcal (2) G-P(sol) polarization free energy of solvation -85.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds