Wall clock time and date at job start Tue Mar 31 2020 19:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31132 * 126.54761 * 2 1 4 4 C 1.34497 * 105.61225 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.29154 * 180.12933 * 4 3 2 6 6 H 1.09002 * 109.46553 * 15.28414 * 5 4 3 7 7 N 1.46494 * 109.47432 * 135.28430 * 5 4 3 8 8 C 1.34777 * 120.00121 * 275.00642 * 7 5 4 9 9 O 1.21282 * 120.00009 * 359.97438 * 8 7 5 10 10 C 1.50697 * 120.00021 * 179.97438 * 8 7 5 11 11 S 1.81001 * 109.47326 * 179.97438 * 10 8 7 12 12 C 1.76199 * 99.99994 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00278 * 0.02562 * 12 11 10 14 14 C 1.38806 * 120.00010 * 180.02562 * 12 11 10 15 15 N 1.31636 * 119.99671 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00237 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47121 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47248 * 119.99754 * 16 14 12 19 19 H 1.48494 * 109.47104 * 239.99892 * 16 14 12 20 20 C 1.50697 * 109.47030 * 255.28590 * 5 4 3 21 21 C 1.39864 * 126.04408 * 280.02045 * 20 5 4 22 22 N 1.30832 * 108.20418 * 179.97438 * 21 20 5 23 23 N 1.40088 * 108.20997 * 359.97438 * 22 21 20 24 24 C 1.46495 * 126.03875 * 179.97438 * 23 22 21 25 25 C 1.34951 * 107.91773 * 359.76046 * 23 22 21 26 26 N 1.29954 * 107.42455 * 0.35161 * 4 3 2 27 27 O 1.21300 * 110.24992 * 359.77819 * 26 4 3 28 28 H 1.09002 * 109.47152 * 179.70998 * 1 2 3 29 29 H 1.09001 * 109.46980 * 59.71099 * 1 2 3 30 30 H 1.09004 * 109.47113 * 299.71079 * 1 2 3 31 31 H 0.97002 * 120.00106 * 94.99919 * 7 5 4 32 32 H 1.09003 * 109.47269 * 299.99987 * 10 8 7 33 33 H 1.09006 * 109.47473 * 59.99493 * 10 8 7 34 34 H 0.96991 * 119.99447 * 179.97438 * 15 14 12 35 35 H 1.08007 * 125.89736 * 359.96127 * 21 20 5 36 36 H 1.08995 * 109.47032 * 89.98176 * 24 23 22 37 37 H 1.09003 * 109.47069 * 209.97497 * 24 23 22 38 38 H 1.08996 * 109.47394 * 329.97685 * 24 23 22 39 39 H 1.08005 * 126.12332 * 180.23953 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8112 1.3887 0.0036 6 1 4.5797 2.4183 0.2761 7 7 5.7520 0.8260 0.9754 8 6 5.6733 1.1812 2.2731 9 8 4.8238 1.9670 2.6363 10 6 6.6407 0.6020 3.2729 11 16 6.2809 1.2687 4.9167 12 6 7.5231 0.4473 5.8586 13 1 8.2091 -0.2307 5.3728 14 6 7.6200 0.6718 7.2249 15 7 6.7842 1.4987 7.8169 16 14 8.9373 -0.1983 8.2233 17 1 9.7433 -1.0674 7.3286 18 1 9.8209 0.8098 8.8623 19 1 8.2948 -1.0295 9.2727 20 6 5.4305 1.3597 -1.3700 21 6 6.2045 0.3233 -1.9020 22 7 6.5614 0.6608 -3.1146 23 7 6.0245 1.9243 -3.3933 24 6 6.1841 2.6721 -4.6429 25 6 5.3303 2.3288 -2.3091 26 7 3.4645 -0.7242 -0.0067 27 8 2.3029 -1.0736 -0.0072 28 1 -0.3633 -1.0277 -0.0052 29 1 -0.3633 0.5183 -0.8874 30 1 -0.3633 0.5094 0.8926 31 1 6.4316 0.1977 0.6849 32 1 6.5390 -0.4831 3.2903 33 1 7.6591 0.8669 2.9886 34 1 6.8517 1.6552 8.7717 35 1 6.4632 -0.5966 -1.3986 36 1 5.3752 2.4143 -5.3264 37 1 6.1552 3.7413 -4.4327 38 1 7.1406 2.4173 -5.0992 39 1 4.7934 3.2605 -2.2079 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556797572.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:50 Heat of formation + Delta-G solvation = 118.369169 kcal Electronic energy + Delta-G solvation = -25834.076334 eV Core-core repulsion = 21908.823427 eV Total energy + Delta-G solvation = -3925.252907 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.55475 -41.61107 -39.26662 -36.36157 -35.07322 -33.39460 -33.09430 -32.41198 -31.21908 -29.45580 -28.89381 -27.55116 -25.98549 -25.42434 -23.63903 -22.15249 -21.53830 -20.55047 -19.93455 -18.25836 -17.91641 -17.65122 -17.20268 -16.30825 -16.00103 -15.67482 -15.21824 -14.85257 -14.78852 -14.61182 -14.09999 -13.90976 -13.78172 -13.63704 -13.32289 -13.24389 -12.98404 -12.84950 -12.72890 -12.54155 -12.13367 -11.90430 -11.57357 -11.05692 -11.05538 -11.00443 -10.88313 -10.74608 -9.95107 -9.79238 -9.75820 -9.47590 -9.19436 -9.05114 -8.83377 -8.22203 -6.48488 -6.20359 -3.90626 1.16021 1.51200 2.11467 2.17955 2.43495 2.81382 2.94706 3.05930 3.23077 3.28424 3.33167 3.57339 3.87372 4.09682 4.16656 4.21728 4.50753 4.70600 4.74354 4.88991 4.91431 5.00252 5.02023 5.05143 5.11903 5.15013 5.25679 5.39389 5.48228 5.61720 5.71802 5.81833 5.90438 6.00372 6.15697 6.24778 6.45937 6.60931 7.33128 7.61316 7.63242 8.19801 8.37285 8.54023 9.25227 10.87179 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.002928 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.463536 B = 9560.886078 C =11134.362786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.171 3.829 3 N -0.472 5.472 4 C 0.173 3.827 5 C 0.324 3.676 6 H 0.123 0.877 7 N -0.724 5.724 8 C 0.535 3.465 9 O -0.509 6.509 10 C -0.152 4.152 11 S -0.059 6.059 12 C -0.534 4.534 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.250 4.250 21 C 0.070 3.930 22 N -0.293 5.293 23 N -0.375 5.375 24 C 0.101 3.899 25 C 0.086 3.914 26 N -0.371 5.371 27 O 0.075 5.925 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.403 0.597 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.268 0.732 35 H 0.184 0.816 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.390 -0.455 -25.537 26.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.050 4.050 3 N -0.206 5.206 4 C -0.102 4.102 5 C 0.215 3.785 6 H 0.140 0.860 7 N -0.379 5.379 8 C 0.321 3.679 9 O -0.382 6.382 10 C -0.303 4.303 11 S 0.168 5.832 12 C -0.682 4.682 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.263 4.263 21 C -0.117 4.117 22 N -0.113 5.113 23 N -0.156 5.156 24 C -0.040 4.040 25 C -0.062 4.062 26 N -0.078 5.078 27 O 0.015 5.985 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.238 0.762 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.201 0.799 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.382 0.609 -25.957 27.284 hybrid contribution 1.467 -1.589 0.851 2.325 sum -6.915 -0.980 -25.106 26.059 Atomic orbital electron populations 1.20353 0.80406 1.05405 1.05579 1.28789 0.98885 0.80857 0.96467 1.71812 1.00073 1.28887 1.19816 1.26172 0.95341 0.88478 1.00233 1.16752 0.80663 0.96314 0.84805 0.85975 1.45979 1.35146 1.49310 1.07433 1.20435 0.84799 0.80858 0.81790 1.90726 1.35812 1.33309 1.78344 1.23526 1.00786 1.04269 1.01675 1.85391 1.45439 1.59523 0.92873 1.22911 1.18684 1.31225 0.95406 0.90833 1.24998 0.96601 0.95248 0.96781 1.70031 1.35637 1.33735 1.10916 0.86109 0.80602 0.79158 0.79587 1.19588 1.20567 1.20582 1.19711 1.11264 0.97940 0.97415 1.23706 0.96701 0.99319 0.92005 1.77413 1.21467 0.95522 1.16924 1.48507 1.39485 1.14647 1.12928 1.21901 1.04108 0.95344 0.82634 1.22310 0.96713 1.00065 0.87080 1.74545 0.97097 1.15675 1.20435 1.85285 1.11601 1.35861 1.65722 0.88665 0.88117 0.87792 0.76202 0.89075 0.88915 0.92256 0.79898 0.90645 0.89172 0.89076 0.80178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.17 1.99 8.51 -13.05 -0.11 1.88 16 3 N -0.47 -6.84 11.55 -9.86 -0.11 -6.95 16 4 C 0.17 2.61 7.00 -156.36 -1.09 1.52 16 5 C 0.32 4.52 2.94 -70.24 -0.21 4.31 16 6 H 0.12 1.82 7.57 -51.93 -0.39 1.43 16 7 N -0.72 -10.77 5.04 -56.07 -0.28 -11.06 16 8 C 0.53 10.40 7.80 -10.99 -0.09 10.31 16 9 O -0.51 -11.80 15.52 5.56 0.09 -11.72 16 10 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 11 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 12 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 13 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 15 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 16 Si 0.92 21.66 29.55 -169.99 -5.02 16.63 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.25 -2.91 5.07 -105.06 -0.53 -3.45 16 21 C 0.07 0.81 11.20 -17.37 -0.19 0.61 16 22 N -0.29 -3.51 12.57 30.62 0.39 -3.12 16 23 N -0.37 -3.56 4.01 -68.16 -0.27 -3.83 16 24 C 0.10 0.50 11.47 59.84 0.69 1.19 16 25 C 0.09 0.83 11.40 -17.22 -0.20 0.63 16 26 N -0.37 -5.60 12.15 30.90 0.38 -5.23 16 27 O 0.07 1.00 11.31 18.10 0.20 1.20 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.40 4.97 7.63 -40.82 -0.31 4.66 16 32 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 33 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 34 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.18 1.83 7.72 -52.48 -0.41 1.43 16 36 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.18 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -39.52 366.12 -6.00 -45.51 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.46 Total: 1.53 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -0.94 Total: 1.00 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.82 Total: -55.84 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.29 Total: -10.52 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -39.52 -6.00 -45.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556797572.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.884 kcal (2) G-P(sol) polarization free energy of solvation -39.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds