Wall clock time and date at job start Tue Mar 31 2020 19:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31132 * 126.54761 * 2 1 4 4 C 1.34497 * 105.61225 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.29154 * 180.12933 * 4 3 2 6 6 H 1.09002 * 109.46553 * 15.28414 * 5 4 3 7 7 N 1.46494 * 109.47432 * 135.28430 * 5 4 3 8 8 C 1.34777 * 120.00121 * 275.00642 * 7 5 4 9 9 O 1.21282 * 120.00009 * 359.97438 * 8 7 5 10 10 C 1.50697 * 120.00021 * 179.97438 * 8 7 5 11 11 S 1.81001 * 109.47326 * 179.97438 * 10 8 7 12 12 C 1.76199 * 99.99994 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00278 * 0.02562 * 12 11 10 14 14 C 1.38806 * 120.00010 * 180.02562 * 12 11 10 15 15 N 1.31636 * 119.99671 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00237 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47121 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47248 * 119.99754 * 16 14 12 19 19 H 1.48494 * 109.47104 * 239.99892 * 16 14 12 20 20 C 1.50697 * 109.47030 * 255.28590 * 5 4 3 21 21 C 1.39864 * 126.04408 * 280.02045 * 20 5 4 22 22 N 1.30832 * 108.20418 * 179.97438 * 21 20 5 23 23 N 1.40088 * 108.20997 * 359.97438 * 22 21 20 24 24 C 1.46495 * 126.03875 * 179.97438 * 23 22 21 25 25 C 1.34951 * 107.91773 * 359.76046 * 23 22 21 26 26 N 1.29954 * 107.42455 * 0.35161 * 4 3 2 27 27 O 1.21300 * 110.24992 * 359.77819 * 26 4 3 28 28 H 1.09002 * 109.47152 * 179.70998 * 1 2 3 29 29 H 1.09001 * 109.46980 * 59.71099 * 1 2 3 30 30 H 1.09004 * 109.47113 * 299.71079 * 1 2 3 31 31 H 0.97002 * 120.00106 * 94.99919 * 7 5 4 32 32 H 1.09003 * 109.47269 * 299.99987 * 10 8 7 33 33 H 1.09006 * 109.47473 * 59.99493 * 10 8 7 34 34 H 0.96991 * 119.99447 * 179.97438 * 15 14 12 35 35 H 1.08007 * 125.89736 * 359.96127 * 21 20 5 36 36 H 1.08995 * 109.47032 * 89.98176 * 24 23 22 37 37 H 1.09003 * 109.47069 * 209.97497 * 24 23 22 38 38 H 1.08996 * 109.47394 * 329.97685 * 24 23 22 39 39 H 1.08005 * 126.12332 * 180.23953 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8112 1.3887 0.0036 6 1 4.5797 2.4183 0.2761 7 7 5.7520 0.8260 0.9754 8 6 5.6733 1.1812 2.2731 9 8 4.8238 1.9670 2.6363 10 6 6.6407 0.6020 3.2729 11 16 6.2809 1.2687 4.9167 12 6 7.5231 0.4473 5.8586 13 1 8.2091 -0.2307 5.3728 14 6 7.6200 0.6718 7.2249 15 7 6.7842 1.4987 7.8169 16 14 8.9373 -0.1983 8.2233 17 1 9.7433 -1.0674 7.3286 18 1 9.8209 0.8098 8.8623 19 1 8.2948 -1.0295 9.2727 20 6 5.4305 1.3597 -1.3700 21 6 6.2045 0.3233 -1.9020 22 7 6.5614 0.6608 -3.1146 23 7 6.0245 1.9243 -3.3933 24 6 6.1841 2.6721 -4.6429 25 6 5.3303 2.3288 -2.3091 26 7 3.4645 -0.7242 -0.0067 27 8 2.3029 -1.0736 -0.0072 28 1 -0.3633 -1.0277 -0.0052 29 1 -0.3633 0.5183 -0.8874 30 1 -0.3633 0.5094 0.8926 31 1 6.4316 0.1977 0.6849 32 1 6.5390 -0.4831 3.2903 33 1 7.6591 0.8669 2.9886 34 1 6.8517 1.6552 8.7717 35 1 6.4632 -0.5966 -1.3986 36 1 5.3752 2.4143 -5.3264 37 1 6.1552 3.7413 -4.4327 38 1 7.1406 2.4173 -5.0992 39 1 4.7934 3.2605 -2.2079 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556797572.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:49 Heat of formation + Delta-G solvation = 87.062681 kcal Electronic energy + Delta-G solvation = -25835.433886 eV Core-core repulsion = 21908.823427 eV Total energy + Delta-G solvation = -3926.610458 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.59284 -42.42409 -40.73947 -37.51639 -36.16638 -34.59552 -34.18275 -34.09086 -32.31066 -30.74369 -29.67731 -28.49696 -27.65344 -26.82260 -24.66581 -23.16782 -22.40439 -21.57923 -21.11958 -19.90741 -19.22350 -18.63822 -18.31795 -17.80930 -17.08755 -16.88922 -16.65100 -16.38279 -15.97924 -15.60154 -15.41407 -15.15955 -14.94595 -14.50136 -14.40218 -14.17048 -13.97814 -13.73115 -13.64079 -13.41864 -13.34917 -13.17368 -12.93724 -12.91931 -12.64943 -12.52179 -12.10044 -11.76064 -11.72273 -11.17500 -11.16537 -10.86165 -10.55626 -10.50924 -10.30537 -9.65223 -8.68281 -8.35832 -6.13923 0.18820 0.73520 1.08802 1.26178 1.38933 1.41102 1.43364 1.52981 1.59256 1.62670 1.97577 2.11605 2.25816 2.80133 2.98423 3.10707 3.29610 3.42485 3.79493 3.85201 3.98727 4.02636 4.20940 4.25153 4.32242 4.42348 4.46139 4.55747 4.64812 4.65575 4.68785 4.70038 4.83173 5.01322 5.13582 5.20830 5.41417 5.41596 5.95134 6.19360 6.31234 6.53327 7.05459 7.06486 7.19062 8.73737 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.002928 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.463536 B = 9560.886078 C =11134.362786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.181 3.819 3 N -0.504 5.504 4 C 0.160 3.840 5 C 0.330 3.670 6 H 0.110 0.890 7 N -0.702 5.702 8 C 0.540 3.460 9 O -0.552 6.552 10 C -0.129 4.129 11 S -0.144 6.144 12 C -0.546 4.546 13 H 0.082 0.918 14 C 0.014 3.986 15 N -0.911 5.911 16 Si 0.999 3.001 17 H -0.258 1.258 18 H -0.273 1.273 19 H -0.274 1.274 20 C -0.270 4.270 21 C 0.063 3.937 22 N -0.320 5.320 23 N -0.371 5.371 24 C 0.091 3.909 25 C 0.097 3.903 26 N -0.390 5.390 27 O 0.069 5.931 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.111 0.889 31 H 0.417 0.583 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.272 0.728 35 H 0.190 0.810 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 -1.103 -27.167 28.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.039 4.039 3 N -0.238 5.238 4 C -0.115 4.115 5 C 0.221 3.779 6 H 0.128 0.872 7 N -0.356 5.356 8 C 0.326 3.674 9 O -0.429 6.429 10 C -0.280 4.280 11 S 0.083 5.917 12 C -0.694 4.694 13 H 0.100 0.900 14 C -0.191 4.191 15 N -0.547 5.547 16 Si 0.821 3.179 17 H -0.181 1.181 18 H -0.198 1.198 19 H -0.199 1.199 20 C -0.283 4.283 21 C -0.123 4.123 22 N -0.141 5.141 23 N -0.151 5.151 24 C -0.049 4.049 25 C -0.053 4.053 26 N -0.099 5.099 27 O 0.010 5.990 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.129 0.871 31 H 0.254 0.746 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.081 0.919 35 H 0.207 0.793 36 H 0.107 0.893 37 H 0.136 0.864 38 H 0.113 0.887 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -8.083 -0.062 -27.661 28.818 hybrid contribution 1.262 -1.358 1.173 2.194 sum -6.821 -1.420 -26.489 27.390 Atomic orbital electron populations 1.20747 0.76398 1.07648 1.06865 1.29892 1.00596 0.79675 0.93693 1.71814 1.00254 1.30150 1.21626 1.26345 0.95944 0.88721 1.00468 1.16710 0.80350 0.95299 0.85525 0.87235 1.45715 1.35259 1.48579 1.06070 1.20160 0.83962 0.80389 0.82903 1.90712 1.37462 1.35405 1.79289 1.23358 1.02278 1.04657 0.97733 1.85538 1.46678 1.61222 0.98213 1.23232 1.18745 1.31372 0.96060 0.89984 1.26129 0.99074 0.95878 0.98036 1.70185 1.37707 1.35366 1.11447 0.84896 0.77290 0.77994 0.77710 1.18137 1.19786 1.19901 1.19564 1.12706 0.99218 0.96807 1.23835 0.96717 0.99640 0.92108 1.77357 1.22581 0.97092 1.17118 1.48874 1.38355 1.13953 1.13955 1.22301 1.04866 0.96480 0.81222 1.22750 0.95706 1.00378 0.86420 1.74509 0.98153 1.15750 1.21508 1.85241 1.11394 1.36365 1.65953 0.86018 0.85793 0.87078 0.74579 0.87545 0.86739 0.91944 0.79315 0.89257 0.86367 0.88748 0.77273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.56 10.51 71.24 0.75 0.19 16 2 C 0.18 4.05 8.51 88.38 0.75 4.81 16 3 N -0.50 -14.53 11.55 -303.17 -3.50 -18.03 16 4 C 0.16 4.85 7.00 138.46 0.97 5.82 16 5 C 0.33 9.21 2.94 43.50 0.13 9.34 16 6 H 0.11 3.33 7.57 -2.39 -0.02 3.31 16 7 N -0.70 -20.77 5.04 -449.70 -2.27 -23.03 16 8 C 0.54 21.18 7.80 87.66 0.68 21.87 16 9 O -0.55 -26.39 15.52 -3.03 -0.05 -26.43 16 10 C -0.13 -5.36 6.16 71.23 0.44 -4.92 16 11 S -0.14 -8.12 20.57 -56.49 -1.16 -9.29 16 12 C -0.55 -31.68 9.50 67.96 0.65 -31.04 16 13 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 14 C 0.01 0.78 5.49 84.86 0.47 1.25 16 15 N -0.91 -56.37 13.22 21.65 0.29 -56.08 16 16 Si 1.00 44.19 29.55 68.60 2.03 46.22 16 17 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 C -0.27 -6.09 5.07 -20.15 -0.10 -6.19 16 21 C 0.06 1.42 11.20 85.24 0.95 2.38 16 22 N -0.32 -7.35 12.57 -57.03 -0.72 -8.07 16 23 N -0.37 -6.36 4.01 -369.57 -1.48 -7.85 16 24 C 0.09 0.67 11.47 127.77 1.47 2.13 16 25 C 0.10 1.70 11.40 83.54 0.95 2.65 16 26 N -0.39 -11.79 12.15 -60.30 -0.73 -12.52 16 27 O 0.07 1.81 11.31 74.84 0.85 2.65 16 28 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.42 9.98 7.63 -92.71 -0.71 9.27 16 32 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 33 H 0.11 4.24 8.14 -2.39 -0.02 4.22 16 34 H 0.27 15.53 8.31 -92.72 -0.77 14.76 16 35 H 0.19 3.73 7.72 -2.91 -0.02 3.70 16 36 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 39 H 0.21 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -88.51 366.12 1.75 -86.76 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.40 Total: 17.40 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 8.10 Total: 8.28 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -8.42 Total: -125.59 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: 0.80 Total: -23.78 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.16 Total: -9.29 kcal Total: -88.51 1.75 -86.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556797572.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.824 kcal (2) G-P(sol) polarization free energy of solvation -88.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds