Wall clock time and date at job start Tue Mar 31 2020 19:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30011 * 127.32988 * 2 1 4 4 O 1.20663 * 112.30145 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15437 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.82848 * 179.97438 * 5 4 3 7 7 F 1.39899 * 109.46714 * 270.01993 * 6 5 4 8 8 F 1.39899 * 109.47032 * 30.01845 * 6 5 4 9 9 F 1.39902 * 109.47136 * 150.02237 * 6 5 4 10 10 C 1.37356 * 106.34151 * 359.97438 * 5 4 3 11 11 C 1.47403 * 128.56722 * 179.97438 * 10 5 4 12 12 O 1.21611 * 119.99957 * 270.04868 * 11 10 5 13 13 N 1.34772 * 120.00442 * 90.03899 * 11 10 5 14 14 C 1.46493 * 120.00481 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47531 * 180.02562 * 14 13 11 16 16 H 1.09003 * 109.46703 * 59.99762 * 15 14 13 17 17 O 1.42898 * 109.46927 * 300.00299 * 15 14 13 18 18 C 1.52996 * 109.47304 * 179.97438 * 15 14 13 19 19 N 1.46498 * 109.47150 * 185.00033 * 18 15 14 20 20 C 1.36938 * 120.00285 * 180.02562 * 19 18 15 21 21 H 1.07999 * 119.99656 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00387 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99629 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00109 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47163 * 60.00225 * 24 22 20 26 26 H 1.48498 * 109.47078 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47151 * 300.00436 * 24 22 20 28 28 H 1.08996 * 109.46955 * 90.02599 * 1 2 3 29 29 H 1.09004 * 109.46954 * 210.02330 * 1 2 3 30 30 H 1.09001 * 109.47301 * 330.02242 * 1 2 3 31 31 H 0.97006 * 119.99414 * 0.02562 * 13 11 10 32 32 H 1.09007 * 109.47148 * 300.00396 * 14 13 11 33 33 H 1.09003 * 109.47322 * 60.00268 * 14 13 11 34 34 H 0.96696 * 113.99932 * 299.99816 * 17 15 14 35 35 H 1.09005 * 109.47426 * 305.00251 * 18 15 14 36 36 H 1.09002 * 109.46947 * 64.99903 * 18 15 14 37 37 H 0.97002 * 120.00279 * 0.02562 * 19 18 15 38 38 H 0.96999 * 119.99727 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6495 -0.6006 0.0004 6 6 4.9713 -1.3244 0.0003 7 9 5.3805 -1.5478 -1.3187 8 9 5.9288 -0.5467 0.6603 9 9 4.8316 -2.5506 0.6593 10 6 2.3993 -1.1695 0.0003 11 6 2.0402 -2.5991 -0.0004 12 8 1.8928 -3.1885 -1.0538 13 7 1.8754 -3.2532 1.1664 14 6 1.5191 -4.6741 1.1658 15 6 1.3933 -5.1691 2.6081 16 1 0.6179 -4.6003 3.1211 17 8 2.6401 -4.9910 3.2832 18 6 1.0206 -6.6530 2.6073 19 7 0.7834 -7.0976 3.9829 20 6 0.4345 -8.3982 4.2316 21 1 0.3346 -9.0963 3.4136 22 6 0.2103 -8.8197 5.5351 23 7 0.3327 -7.9690 6.5319 24 14 -0.2649 -10.5940 5.8743 25 1 0.8085 -11.4962 5.3852 26 1 -0.4469 -10.7870 7.3354 27 1 -1.5347 -10.9093 5.1719 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5135 31 1 1.9928 -2.7829 2.0067 32 1 0.5678 -4.8099 0.6511 33 1 2.2944 -5.2429 0.6524 34 1 3.3774 -5.4698 2.8804 35 1 0.1162 -6.8002 2.0169 36 1 1.8358 -7.2322 2.1737 37 1 0.8736 -6.4707 4.7176 38 1 0.1757 -8.2634 7.4427 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568580655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:45 Heat of formation + Delta-G solvation = -156.215471 kcal Electronic energy + Delta-G solvation = -29411.845191 eV Core-core repulsion = 24457.783038 eV Total energy + Delta-G solvation = -4954.062153 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.79606 -48.32220 -48.27994 -45.70511 -40.05192 -37.77066 -35.33012 -34.62570 -34.09462 -33.58205 -31.38789 -29.60746 -29.25495 -27.39849 -25.94031 -24.50269 -22.65468 -21.82311 -21.58003 -20.95830 -19.36591 -19.31657 -18.96423 -18.26531 -18.12933 -17.21765 -16.66791 -16.53038 -15.99280 -15.55623 -15.11534 -15.07522 -14.77955 -14.65224 -14.51609 -14.38758 -14.36650 -14.28846 -13.96327 -13.92936 -13.74820 -13.61640 -13.06657 -12.91203 -12.76417 -12.43154 -12.07320 -11.93248 -11.02754 -10.91896 -10.83676 -10.73459 -10.66308 -10.48687 -10.25072 -9.87798 -9.61897 -9.43417 -8.94801 -6.99507 -5.80626 -3.10756 0.14851 1.14527 1.15900 1.85409 2.36483 2.65327 2.92543 3.38419 3.41326 3.45802 3.46896 3.60889 3.64798 3.78314 4.21735 4.31253 4.47338 4.62663 4.73647 4.80590 4.95759 5.04958 5.09817 5.44798 5.48554 5.51528 5.60559 5.82846 5.99639 6.16178 6.42926 6.58400 7.03535 7.32229 7.63443 7.66787 7.85346 8.37347 9.49084 10.04668 10.40097 11.41576 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.018990 B = 0.002452 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.091953 B =11416.517066 C =12010.518136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.060 3.940 3 N -0.325 5.325 4 O 0.139 5.861 5 C -0.095 4.095 6 C 0.564 3.436 7 F -0.154 7.154 8 F -0.156 7.156 9 F -0.147 7.147 10 C -0.164 4.164 11 C 0.586 3.414 12 O -0.512 6.512 13 N -0.699 5.699 14 C 0.088 3.912 15 C 0.089 3.911 16 H 0.107 0.893 17 O -0.552 6.552 18 C 0.128 3.872 19 N -0.725 5.725 20 C -0.246 4.246 21 H 0.070 0.930 22 C -0.011 4.011 23 N -0.930 5.930 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.286 1.286 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.410 0.590 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.375 0.625 35 H 0.029 0.971 36 H 0.024 0.976 37 H 0.389 0.611 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.300 19.081 -14.723 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 N -0.025 5.025 4 O 0.070 5.930 5 C -0.160 4.160 6 C 0.508 3.492 7 F -0.135 7.135 8 F -0.138 7.138 9 F -0.128 7.128 10 C -0.171 4.171 11 C 0.368 3.632 12 O -0.388 6.388 13 N -0.350 5.350 14 C -0.036 4.036 15 C 0.029 3.971 16 H 0.124 0.876 17 O -0.356 6.356 18 C -0.001 4.001 19 N -0.370 5.370 20 C -0.377 4.377 21 H 0.088 0.912 22 C -0.207 4.207 23 N -0.578 5.578 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.246 0.754 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.222 0.778 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.223 0.777 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.581 20.123 -15.086 25.762 hybrid contribution 0.287 -1.732 0.432 1.808 sum 5.868 18.391 -14.654 24.237 Atomic orbital electron populations 1.20364 0.83720 1.05074 1.04735 1.24927 0.99217 0.85216 1.00707 1.73661 0.88671 1.22770 1.17413 1.84672 1.21855 1.19762 1.66739 1.24211 0.95145 0.86761 1.09898 1.16504 0.80558 0.76968 0.75165 1.93327 1.90714 1.94621 1.34838 1.93304 1.65342 1.74371 1.80740 1.93345 1.95518 1.43225 1.80686 1.22287 0.91469 0.96760 1.06627 1.16778 0.78295 0.83320 0.84840 1.90900 1.49836 1.67071 1.30975 1.45828 1.69196 1.11933 1.08015 1.22284 1.02345 0.79585 0.99388 1.22413 0.87408 0.97854 0.89438 0.87565 1.86588 1.18121 1.73829 1.57112 1.21190 0.98270 0.90602 0.90043 1.42219 1.83495 1.10099 1.01233 1.19163 1.39393 0.86954 0.92215 0.91233 1.24761 1.02392 0.97983 0.95597 1.69662 1.55554 1.33853 0.98709 0.86252 0.78355 0.84522 0.76932 1.21208 1.21627 1.21219 0.88821 0.89034 0.89072 0.75444 0.89724 0.90350 0.77815 0.95313 0.95811 0.77706 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.49 36.01 0.38 -0.13 16 2 C 0.06 0.55 7.59 -79.77 -0.61 -0.05 16 3 N -0.33 -3.25 12.01 34.78 0.42 -2.83 16 4 O 0.14 1.36 11.06 18.65 0.21 1.56 16 5 C -0.09 -0.92 6.85 -34.63 -0.24 -1.16 16 6 C 0.56 5.27 3.52 36.01 0.13 5.40 16 7 F -0.15 -1.52 17.30 2.25 0.04 -1.48 16 8 F -0.16 -1.38 17.30 2.25 0.04 -1.34 16 9 F -0.15 -1.48 16.09 2.25 0.04 -1.44 16 10 C -0.16 -1.69 6.19 -102.89 -0.64 -2.32 16 11 C 0.59 6.84 6.59 -12.53 -0.08 6.76 16 12 O -0.51 -7.67 17.11 5.27 0.09 -7.58 16 13 N -0.70 -7.24 5.44 -61.39 -0.33 -7.57 16 14 C 0.09 1.00 5.34 -4.04 -0.02 0.97 16 15 C 0.09 1.23 3.08 -26.73 -0.08 1.15 16 16 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 17 O -0.55 -7.99 13.03 -35.23 -0.46 -8.45 16 18 C 0.13 2.31 5.90 -4.05 -0.02 2.29 16 19 N -0.73 -17.71 5.55 -59.91 -0.33 -18.04 16 20 C -0.25 -6.75 9.99 -15.06 -0.15 -6.90 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 24 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.41 3.78 8.33 -40.82 -0.34 3.44 16 32 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.37 4.50 9.05 45.56 0.41 4.91 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.39 10.17 7.67 -40.82 -0.31 9.86 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -32.84 356.19 -3.83 -36.67 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -3.17 Total: 9.61 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -1.43 Total: 5.60 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.48 Total: -55.56 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.16 Total: -14.47 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.11 Total: -4.26 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.84 -3.83 -36.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568580655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.550 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds