Wall clock time and date at job start Tue Mar 31 2020 19:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30011 * 127.33341 * 2 1 4 4 O 1.20663 * 112.30145 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15437 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.82832 * 179.97438 * 5 4 3 7 7 F 1.39905 * 109.47034 * 270.02184 * 6 5 4 8 8 F 1.39901 * 109.47033 * 30.02055 * 6 5 4 9 9 F 1.39904 * 109.47112 * 150.02246 * 6 5 4 10 10 C 1.37356 * 106.34151 * 359.97438 * 5 4 3 11 11 C 1.47402 * 128.56698 * 180.02562 * 10 5 4 12 12 O 1.21606 * 120.00045 * 269.97525 * 11 10 5 13 13 N 1.34779 * 120.00213 * 89.96921 * 11 10 5 14 14 C 1.46491 * 120.00279 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47318 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.47535 * 305.00074 * 15 14 13 17 17 O 1.42901 * 109.47407 * 65.00273 * 15 14 13 18 18 C 1.53005 * 109.47440 * 184.99805 * 15 14 13 19 19 N 1.46501 * 109.47434 * 179.97438 * 18 15 14 20 20 C 1.36932 * 119.99829 * 180.02562 * 19 18 15 21 21 H 1.07994 * 120.00447 * 359.97438 * 20 19 18 22 22 C 1.38817 * 119.99708 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99767 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00123 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47461 * 89.99633 * 24 22 20 26 26 H 1.48500 * 109.47115 * 209.99851 * 24 22 20 27 27 H 1.48498 * 109.47137 * 329.99907 * 24 22 20 28 28 H 1.08998 * 109.47240 * 90.01952 * 1 2 3 29 29 H 1.08998 * 109.47078 * 210.02447 * 1 2 3 30 30 H 1.09004 * 109.46609 * 330.02345 * 1 2 3 31 31 H 0.97000 * 119.99727 * 0.02562 * 13 11 10 32 32 H 1.09007 * 109.47114 * 300.00533 * 14 13 11 33 33 H 1.09004 * 109.47361 * 60.00220 * 14 13 11 34 34 H 0.96694 * 114.00219 * 59.99865 * 17 15 14 35 35 H 1.08998 * 109.46977 * 300.00611 * 18 15 14 36 36 H 1.09003 * 109.46771 * 59.99831 * 18 15 14 37 37 H 0.96993 * 119.99697 * 0.02562 * 19 18 15 38 38 H 0.96996 * 119.99616 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4609 0.7208 0.0005 5 6 3.6495 -0.6008 0.0004 6 6 4.9713 -1.3246 0.0003 7 9 5.3806 -1.5480 -1.3187 8 9 5.9288 -0.5469 0.6604 9 9 4.8315 -2.5508 0.6593 10 6 2.3992 -1.1696 0.0003 11 6 2.0401 -2.5992 0.0006 12 8 1.8917 -3.1891 -1.0523 13 7 1.8762 -3.2526 1.1680 14 6 1.5198 -4.6735 1.1684 15 6 1.3952 -5.1677 2.6109 16 1 2.3172 -4.9508 3.1503 17 8 0.3026 -4.5038 3.2493 18 6 1.1461 -6.6773 2.6132 19 7 1.0274 -7.1506 3.9946 20 6 0.8017 -8.4775 4.2466 21 1 0.7107 -9.1750 3.4272 22 6 0.6887 -8.9259 5.5555 23 7 0.4712 -10.2012 5.7978 24 14 0.8453 -7.7193 6.9729 25 1 -0.4939 -7.1719 7.3074 26 1 1.4046 -8.4179 8.1581 27 1 1.7499 -6.6091 6.5802 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5135 31 1 1.9943 -2.7819 2.0079 32 1 0.5681 -4.8095 0.6546 33 1 2.2946 -5.2426 0.6546 34 1 -0.5519 -4.6526 2.8219 35 1 0.2241 -6.8942 2.0739 36 1 1.9795 -7.1838 2.1263 37 1 1.1088 -6.5241 4.7305 38 1 0.3919 -10.5144 6.7124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568580661.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:48 Heat of formation + Delta-G solvation = -152.474943 kcal Electronic energy + Delta-G solvation = -29448.587183 eV Core-core repulsion = 24494.687232 eV Total energy + Delta-G solvation = -4953.899952 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.85369 -48.38768 -48.33072 -45.75904 -40.12819 -37.94040 -35.38332 -34.75951 -34.24807 -33.64297 -31.55590 -29.85176 -29.42612 -27.51618 -26.14674 -24.56835 -22.39552 -21.89104 -21.65487 -21.01844 -19.42342 -19.38690 -19.02484 -18.32230 -18.19853 -17.78785 -16.71282 -16.55485 -16.23543 -15.51493 -15.18953 -15.13643 -14.90450 -14.71722 -14.61695 -14.44765 -14.42551 -14.29907 -13.98605 -13.97086 -13.87054 -13.66663 -13.33760 -12.97040 -12.80515 -12.46662 -12.16747 -12.05442 -11.37074 -11.02280 -10.93046 -10.88710 -10.71542 -10.55236 -10.22979 -9.89596 -9.62156 -9.51613 -8.98170 -7.31581 -5.82294 -3.19053 0.09042 1.08721 1.10727 1.79021 2.30689 2.58187 2.86742 3.33163 3.35929 3.40395 3.43564 3.55142 3.58697 3.72205 4.16182 4.23955 4.40193 4.54273 4.55753 4.74778 4.91328 4.98256 5.00486 5.32099 5.40191 5.45290 5.51044 5.68755 5.72473 5.93654 6.33757 6.45430 6.94845 7.27069 7.58429 7.67664 7.92998 8.36117 9.15325 9.87101 10.06295 11.35690 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.002667 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.990660 B =10497.900193 C =11001.951954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.061 3.939 3 N -0.325 5.325 4 O 0.140 5.860 5 C -0.095 4.095 6 C 0.564 3.436 7 F -0.153 7.153 8 F -0.156 7.156 9 F -0.148 7.148 10 C -0.165 4.165 11 C 0.586 3.414 12 O -0.510 6.510 13 N -0.700 5.700 14 C 0.089 3.911 15 C 0.084 3.916 16 H 0.106 0.894 17 O -0.556 6.556 18 C 0.131 3.869 19 N -0.749 5.749 20 C -0.250 4.250 21 H 0.090 0.910 22 C 0.006 3.994 23 N -0.932 5.932 24 Si 0.888 3.112 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.277 1.277 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.409 0.591 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.377 0.623 35 H 0.033 0.967 36 H 0.038 0.962 37 H 0.366 0.634 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.106 24.408 -13.379 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 N -0.025 5.025 4 O 0.070 5.930 5 C -0.161 4.161 6 C 0.508 3.492 7 F -0.134 7.134 8 F -0.137 7.137 9 F -0.129 7.129 10 C -0.172 4.172 11 C 0.368 3.632 12 O -0.385 6.385 13 N -0.352 5.352 14 C -0.035 4.035 15 C 0.025 3.975 16 H 0.124 0.876 17 O -0.361 6.361 18 C 0.003 3.997 19 N -0.396 5.396 20 C -0.380 4.380 21 H 0.108 0.892 22 C -0.190 4.190 23 N -0.580 5.580 24 Si 0.718 3.282 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.203 1.203 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.244 0.756 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.225 0.775 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.200 0.800 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.232 25.192 -13.764 29.180 hybrid contribution -0.050 -0.085 1.035 1.040 sum 5.183 25.107 -12.729 28.623 Atomic orbital electron populations 1.20364 0.83700 1.05079 1.04731 1.24929 0.99225 0.85182 1.00646 1.73666 0.88665 1.22761 1.17402 1.84677 1.21865 1.19733 1.66716 1.24213 0.95124 0.86795 1.09934 1.16507 0.80572 0.76901 0.75214 1.93333 1.90697 1.94606 1.34756 1.93306 1.65340 1.74359 1.80739 1.93338 1.95533 1.43326 1.80734 1.22283 0.91472 0.96748 1.06690 1.16772 0.78268 0.83327 0.84812 1.90906 1.49653 1.66981 1.30980 1.45833 1.69385 1.11953 1.07990 1.22258 1.02510 0.79702 0.99017 1.22466 0.91299 0.93404 0.90369 0.87572 1.86556 1.18416 1.73575 1.57587 1.21158 0.99538 0.90083 0.88918 1.42548 1.88777 1.07083 1.01145 1.19031 1.41917 0.83331 0.93673 0.89227 1.24679 1.01522 0.95766 0.97001 1.69706 1.55712 1.12956 1.19609 0.86497 0.77992 0.80747 0.82942 1.20994 1.21759 1.20295 0.88817 0.89012 0.89084 0.75581 0.90143 0.89507 0.77545 0.94927 0.94372 0.80000 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.49 36.01 0.38 -0.09 16 2 C 0.06 0.53 7.59 -79.77 -0.61 -0.07 16 3 N -0.32 -3.11 12.01 34.78 0.42 -2.69 16 4 O 0.14 1.30 11.06 18.65 0.21 1.50 16 5 C -0.10 -0.88 6.85 -34.63 -0.24 -1.12 16 6 C 0.56 5.04 3.52 36.01 0.13 5.17 16 7 F -0.15 -1.46 17.30 2.25 0.04 -1.42 16 8 F -0.16 -1.31 17.30 2.25 0.04 -1.27 16 9 F -0.15 -1.43 16.09 2.25 0.04 -1.39 16 10 C -0.16 -1.60 6.19 -102.89 -0.64 -2.24 16 11 C 0.59 6.50 6.59 -12.53 -0.08 6.42 16 12 O -0.51 -7.37 17.11 5.27 0.09 -7.28 16 13 N -0.70 -6.72 5.50 -61.40 -0.34 -7.05 16 14 C 0.09 0.93 5.31 -4.05 -0.02 0.91 16 15 C 0.08 1.07 3.09 -26.73 -0.08 0.98 16 16 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 17 O -0.56 -7.09 13.03 -35.23 -0.46 -7.54 16 18 C 0.13 2.24 5.92 -4.04 -0.02 2.21 16 19 N -0.75 -17.01 5.30 -59.91 -0.32 -17.33 16 20 C -0.25 -6.92 10.47 -15.06 -0.16 -7.08 16 21 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -28.98 13.97 55.49 0.78 -28.21 16 24 Si 0.89 21.95 27.73 -169.99 -4.71 17.24 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 27 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.41 3.38 8.46 -40.82 -0.35 3.04 16 32 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.38 3.79 9.04 45.56 0.41 4.20 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.37 8.31 5.41 -40.82 -0.22 8.09 16 38 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -33.81 353.07 -3.47 -37.28 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -3.13 Total: 7.67 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -1.44 Total: 5.18 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.54 Total: -55.28 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.16 Total: -13.32 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.11 Total: -4.08 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.81 -3.47 -37.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568580661.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.193 kcal (2) G-P(sol) polarization free energy of solvation -33.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds