Wall clock time and date at job start Tue Mar 31 2020 19:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30011 * 127.33341 * 2 1 4 4 O 1.20663 * 112.30145 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15437 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.82832 * 179.97438 * 5 4 3 7 7 F 1.39905 * 109.47034 * 270.02184 * 6 5 4 8 8 F 1.39901 * 109.47033 * 30.02055 * 6 5 4 9 9 F 1.39904 * 109.47112 * 150.02246 * 6 5 4 10 10 C 1.37356 * 106.34151 * 359.97438 * 5 4 3 11 11 C 1.47402 * 128.56698 * 180.02562 * 10 5 4 12 12 O 1.21606 * 120.00045 * 269.97525 * 11 10 5 13 13 N 1.34779 * 120.00213 * 89.96921 * 11 10 5 14 14 C 1.46491 * 120.00279 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47318 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.47535 * 305.00074 * 15 14 13 17 17 O 1.42901 * 109.47407 * 65.00273 * 15 14 13 18 18 C 1.53005 * 109.47440 * 184.99805 * 15 14 13 19 19 N 1.46501 * 109.47434 * 179.97438 * 18 15 14 20 20 C 1.36932 * 119.99829 * 180.02562 * 19 18 15 21 21 H 1.07994 * 120.00447 * 359.97438 * 20 19 18 22 22 C 1.38817 * 119.99708 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99767 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00123 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47461 * 89.99633 * 24 22 20 26 26 H 1.48500 * 109.47115 * 209.99851 * 24 22 20 27 27 H 1.48498 * 109.47137 * 329.99907 * 24 22 20 28 28 H 1.08998 * 109.47240 * 90.01952 * 1 2 3 29 29 H 1.08998 * 109.47078 * 210.02447 * 1 2 3 30 30 H 1.09004 * 109.46609 * 330.02345 * 1 2 3 31 31 H 0.97000 * 119.99727 * 0.02562 * 13 11 10 32 32 H 1.09007 * 109.47114 * 300.00533 * 14 13 11 33 33 H 1.09004 * 109.47361 * 60.00220 * 14 13 11 34 34 H 0.96694 * 114.00219 * 59.99865 * 17 15 14 35 35 H 1.08998 * 109.46977 * 300.00611 * 18 15 14 36 36 H 1.09003 * 109.46771 * 59.99831 * 18 15 14 37 37 H 0.96993 * 119.99697 * 0.02562 * 19 18 15 38 38 H 0.96996 * 119.99616 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4609 0.7208 0.0005 5 6 3.6495 -0.6008 0.0004 6 6 4.9713 -1.3246 0.0003 7 9 5.3806 -1.5480 -1.3187 8 9 5.9288 -0.5469 0.6604 9 9 4.8315 -2.5508 0.6593 10 6 2.3992 -1.1696 0.0003 11 6 2.0401 -2.5992 0.0006 12 8 1.8917 -3.1891 -1.0523 13 7 1.8762 -3.2526 1.1680 14 6 1.5198 -4.6735 1.1684 15 6 1.3952 -5.1677 2.6109 16 1 2.3172 -4.9508 3.1503 17 8 0.3026 -4.5038 3.2493 18 6 1.1461 -6.6773 2.6132 19 7 1.0274 -7.1506 3.9946 20 6 0.8017 -8.4775 4.2466 21 1 0.7107 -9.1750 3.4272 22 6 0.6887 -8.9259 5.5555 23 7 0.4712 -10.2012 5.7978 24 14 0.8453 -7.7193 6.9729 25 1 -0.4939 -7.1719 7.3074 26 1 1.4046 -8.4179 8.1581 27 1 1.7499 -6.6091 6.5802 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5135 31 1 1.9943 -2.7819 2.0079 32 1 0.5681 -4.8095 0.6546 33 1 2.2946 -5.2426 0.6546 34 1 -0.5519 -4.6526 2.8219 35 1 0.2241 -6.8942 2.0739 36 1 1.9795 -7.1838 2.1263 37 1 1.1088 -6.5241 4.7305 38 1 0.3919 -10.5144 6.7124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568580661.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:47 Heat of formation + Delta-G solvation = -179.823430 kcal Electronic energy + Delta-G solvation = -29449.773103 eV Core-core repulsion = 24494.687232 eV Total energy + Delta-G solvation = -4955.085871 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.57941 -49.12246 -49.04789 -46.45742 -41.03543 -39.04720 -36.22347 -36.06337 -35.45935 -34.36973 -33.46760 -31.07496 -30.01647 -28.40863 -27.31455 -25.62135 -23.92550 -22.87374 -22.58576 -21.94201 -20.20666 -20.13525 -19.75525 -19.72990 -19.03021 -18.93833 -17.80467 -17.36917 -17.22504 -16.52981 -16.46443 -15.97992 -15.86020 -15.77217 -15.45816 -15.44599 -15.20401 -15.17120 -15.15507 -14.91085 -14.69002 -14.42089 -14.34919 -14.19140 -13.94102 -13.56606 -13.37673 -13.21102 -12.80464 -12.72807 -12.24332 -11.90643 -11.83448 -11.81086 -11.42286 -11.30964 -11.03268 -10.97594 -10.38196 -9.30556 -8.02904 -5.36445 -0.64111 0.36469 0.43940 0.94285 1.40775 1.43414 1.50774 1.54535 1.80194 2.15723 2.49370 2.68354 2.83073 2.86226 3.01648 3.28209 3.33891 3.44986 3.47507 3.57360 3.98334 4.08367 4.15506 4.20226 4.52893 4.59325 4.59932 4.69577 4.95134 5.00054 5.05051 5.20118 5.75109 6.13901 6.20804 6.58051 6.74845 6.82039 7.08896 7.84413 8.02979 9.18504 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.002667 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.990660 B =10497.900193 C =11001.951954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.069 3.931 3 N -0.338 5.338 4 O 0.137 5.863 5 C -0.089 4.089 6 C 0.568 3.432 7 F -0.157 7.157 8 F -0.152 7.152 9 F -0.152 7.152 10 C -0.177 4.177 11 C 0.593 3.407 12 O -0.546 6.546 13 N -0.688 5.688 14 C 0.098 3.902 15 C 0.105 3.895 16 H 0.109 0.891 17 O -0.562 6.562 18 C 0.123 3.877 19 N -0.753 5.753 20 C -0.236 4.236 21 H 0.058 0.942 22 C -0.064 4.064 23 N -0.984 5.984 24 Si 0.959 3.041 25 H -0.278 1.278 26 H -0.298 1.298 27 H -0.252 1.252 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.418 0.582 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.390 0.610 35 H 0.039 0.961 36 H 0.038 0.962 37 H 0.369 0.631 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.017 26.881 -13.203 30.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 N -0.040 5.040 4 O 0.069 5.931 5 C -0.155 4.155 6 C 0.512 3.488 7 F -0.138 7.138 8 F -0.133 7.133 9 F -0.133 7.133 10 C -0.184 4.184 11 C 0.376 3.624 12 O -0.424 6.424 13 N -0.339 5.339 14 C -0.026 4.026 15 C 0.045 3.955 16 H 0.127 0.873 17 O -0.370 6.370 18 C -0.004 4.004 19 N -0.399 5.399 20 C -0.367 4.367 21 H 0.076 0.924 22 C -0.256 4.256 23 N -0.635 5.635 24 Si 0.786 3.214 25 H -0.205 1.205 26 H -0.225 1.225 27 H -0.177 1.177 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.255 0.745 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.239 0.761 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.203 0.797 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.159 27.724 -13.609 31.312 hybrid contribution -0.036 -0.875 0.867 1.232 sum 5.122 26.850 -12.743 30.158 Atomic orbital electron populations 1.20554 0.81709 1.06196 1.05636 1.25367 1.00325 0.84327 0.99206 1.73672 0.88778 1.23153 1.18383 1.84676 1.21989 1.19569 1.66835 1.24230 0.95075 0.86888 1.09336 1.16441 0.80593 0.76756 0.75014 1.93326 1.90739 1.94632 1.35113 1.93316 1.65163 1.74194 1.80609 1.93327 1.95563 1.43615 1.80785 1.22196 0.92018 0.96350 1.07837 1.16812 0.77520 0.83625 0.84403 1.90893 1.51457 1.67861 1.32216 1.45690 1.68526 1.11523 1.08136 1.22065 1.02996 0.80074 0.97429 1.22137 0.91510 0.90180 0.91662 0.87304 1.86537 1.19160 1.73194 1.58080 1.21402 0.99718 0.93325 0.85957 1.42536 1.88570 1.05162 1.03640 1.19042 1.39802 0.85128 0.92747 0.92431 1.25521 1.02388 0.97577 1.00071 1.69887 1.58182 1.15397 1.20015 0.85355 0.78435 0.78799 0.78799 1.20464 1.22466 1.17696 0.87915 0.88204 0.87634 0.74501 0.89295 0.89739 0.76059 0.94296 0.94357 0.79699 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.49 71.24 0.75 -0.01 16 2 C 0.07 1.06 7.59 45.16 0.34 1.40 16 3 N -0.34 -5.93 12.01 -44.78 -0.54 -6.47 16 4 O 0.14 2.36 11.06 76.98 0.85 3.21 16 5 C -0.09 -1.54 6.85 25.48 0.17 -1.36 16 6 C 0.57 9.47 3.52 71.24 0.25 9.72 16 7 F -0.16 -2.87 17.30 44.97 0.78 -2.09 16 8 F -0.15 -2.34 17.30 44.97 0.78 -1.56 16 9 F -0.15 -2.71 16.09 44.97 0.72 -1.99 16 10 C -0.18 -3.15 6.19 -18.75 -0.12 -3.27 16 11 C 0.59 12.11 6.59 86.66 0.57 12.68 16 12 O -0.55 -15.10 17.11 -4.05 -0.07 -15.17 16 13 N -0.69 -11.53 5.50 -466.41 -2.56 -14.10 16 14 C 0.10 1.82 5.31 86.38 0.46 2.28 16 15 C 0.11 2.37 3.09 30.59 0.09 2.46 16 16 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 17 O -0.56 -12.50 13.03 -148.98 -1.94 -14.44 16 18 C 0.12 3.98 5.92 86.38 0.51 4.49 16 19 N -0.75 -33.00 5.30 -343.44 -1.82 -34.82 16 20 C -0.24 -13.12 10.47 84.04 0.88 -12.24 16 21 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 22 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 23 N -0.98 -62.52 13.97 21.65 0.30 -62.21 16 24 Si 0.96 44.91 27.73 68.60 1.90 46.81 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 27 H -0.25 -10.66 6.52 99.48 0.65 -10.01 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.42 5.72 8.46 -92.71 -0.78 4.94 16 32 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.39 6.56 9.04 -74.06 -0.67 5.89 16 35 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.37 15.74 5.41 -92.71 -0.50 15.24 16 38 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -72.75 353.07 1.94 -70.80 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.84 Total: 19.11 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 4.38 Total: 12.91 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -4.62 Total: -117.60 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -1.16 Total: -26.39 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 2.28 Total: -5.64 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.90 Total: 46.81 kcal Total: -72.75 1.94 -70.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568580661.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.019 kcal (2) G-P(sol) polarization free energy of solvation -72.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds