Wall clock time and date at job start Tue Mar 31 2020 19:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47606 * 2 1 4 4 H 1.09001 * 109.47226 * 305.76855 * 3 2 1 5 5 C 1.50699 * 109.47477 * 185.76820 * 3 2 1 6 6 H 1.07996 * 120.00168 * 239.99852 * 5 3 2 7 7 C 1.37877 * 119.99648 * 59.72819 * 5 3 2 8 8 N 1.31508 * 120.00216 * 0.27055 * 7 5 3 9 9 Si 1.86806 * 119.99791 * 180.27817 * 7 5 3 10 10 H 1.48493 * 109.47455 * 89.99659 * 9 7 5 11 11 H 1.48502 * 109.46831 * 209.99613 * 9 7 5 12 12 H 1.48503 * 109.46790 * 329.99049 * 9 7 5 13 13 N 1.46499 * 109.47065 * 65.76724 * 3 2 1 14 14 S 1.65609 * 119.99985 * 245.56936 * 13 3 2 15 15 O 1.42099 * 106.40083 * 51.36724 * 14 13 3 16 16 O 1.42102 * 106.40060 * 184.28718 * 14 13 3 17 17 C 1.76196 * 107.21857 * 297.82455 * 14 13 3 18 18 C 1.38052 * 120.05550 * 116.62525 * 17 14 13 19 19 C 1.38297 * 120.11712 * 180.02562 * 18 17 14 20 20 C 1.38335 * 120.23441 * 359.97438 * 19 18 17 21 21 C 1.38009 * 120.11947 * 0.02562 * 20 19 18 22 22 C 1.39279 * 120.06302 * 296.35655 * 17 14 13 23 23 C 1.48463 * 120.11407 * 0.02562 * 22 17 14 24 24 N 1.34049 * 126.67583 * 3.27782 * 23 22 17 25 25 N 1.28980 * 107.26392 * 179.82934 * 24 23 22 26 26 N 1.28724 * 108.95078 * 0.43698 * 25 24 23 27 27 H 0.97002 * 125.35078 * 179.72242 * 26 25 24 28 28 N 1.28878 * 109.31680 * 359.71884 * 26 25 24 29 29 H 1.09000 * 109.46872 * 63.24332 * 1 2 3 30 30 H 1.08995 * 109.47269 * 183.24832 * 1 2 3 31 31 H 1.09001 * 109.46726 * 303.24843 * 1 2 3 32 32 H 1.09005 * 109.47447 * 239.99503 * 2 1 3 33 33 H 1.09000 * 109.47131 * 119.99899 * 2 1 3 34 34 H 0.97002 * 120.00504 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00240 * 65.56893 * 13 3 2 36 36 H 1.08000 * 119.94516 * 359.97438 * 18 17 14 37 37 H 1.07995 * 119.88560 * 179.97438 * 19 18 17 38 38 H 1.08006 * 119.94151 * 179.97438 * 20 19 18 39 39 H 1.08003 * 120.05981 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5949 1.9853 -0.8338 5 6 3.5403 1.4448 -0.1428 6 1 4.1554 1.8859 0.6276 7 6 4.1278 0.8788 -1.2543 8 7 3.3789 0.3417 -2.1924 9 14 5.9878 0.8748 -1.4277 10 1 6.5395 -0.3599 -0.8143 11 1 6.3509 0.9173 -2.8670 12 1 6.5516 2.0640 -0.7397 13 7 1.6684 2.0918 1.2595 14 16 0.5987 3.3561 1.2551 15 8 -0.5369 2.9182 0.5218 16 8 0.5257 3.8245 2.5948 17 6 1.3290 4.6539 0.3135 18 6 0.7306 5.0817 -0.8547 19 6 1.3030 6.1000 -1.5951 20 6 2.4769 6.6955 -1.1697 21 6 3.0833 6.2755 -0.0033 22 6 2.5080 5.2539 0.7493 23 6 3.1530 4.8016 2.0076 24 7 2.7538 3.7922 2.7941 25 7 3.5823 3.7245 3.7802 26 7 4.4683 4.6486 3.6461 27 1 5.2027 4.8150 4.2575 28 7 4.2266 5.3182 2.5717 29 1 -0.3633 0.4627 -0.9176 30 1 -0.3633 -1.0260 0.0582 31 1 -0.3633 0.5635 0.8595 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7922 -0.0568 -2.9742 35 1 2.0489 1.7813 2.0960 36 1 -0.1857 4.6199 -1.1915 37 1 0.8319 6.4314 -2.5086 38 1 2.9200 7.4901 -1.7518 39 1 3.9996 6.7414 0.3281 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590420295.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:01 Heat of formation + Delta-G solvation = 99.266372 kcal Electronic energy + Delta-G solvation = -28671.549705 eV Core-core repulsion = 24745.468439 eV Total energy + Delta-G solvation = -3926.081267 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.24645 -39.03992 -36.54370 -35.76210 -35.02859 -34.16627 -33.44443 -32.12187 -31.15636 -30.44798 -30.29407 -26.54642 -24.75615 -24.43257 -22.89052 -22.70230 -21.57395 -19.94464 -19.26305 -18.64803 -17.51549 -16.99828 -16.84338 -16.24337 -16.04767 -15.39398 -14.94431 -14.58497 -14.32974 -13.92086 -13.59236 -13.52905 -13.07718 -12.96730 -12.78170 -12.38577 -11.90763 -11.63989 -11.60468 -11.46583 -11.35838 -11.23992 -11.17482 -11.02952 -10.80969 -10.78767 -10.76023 -10.53267 -10.37300 -10.14073 -9.85148 -9.56105 -9.32879 -9.18523 -8.63166 -8.45901 -8.03300 -6.08176 -4.15550 0.62298 1.16135 1.34911 1.43937 2.39274 2.54467 3.22354 3.29736 3.31093 3.67692 3.75126 3.96177 4.30207 4.37003 4.50355 4.85494 5.01202 5.13471 5.21375 5.39167 5.45085 5.56524 5.71082 5.80395 5.99041 6.23144 6.29505 6.40042 6.40131 6.51680 6.54191 6.56111 6.82514 6.88403 7.06760 7.25020 7.38943 7.70125 7.79204 8.06441 8.15067 8.32309 8.41556 8.87896 9.50054 10.96064 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009281 B = 0.006833 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.084999 B = 4096.846511 C = 4583.011070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.280 3.720 4 H 0.043 0.957 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.278 1.278 13 N -1.083 6.083 14 S 2.694 3.306 15 O -0.970 6.970 16 O -0.961 6.961 17 C -0.632 4.632 18 C -0.022 4.022 19 C -0.124 4.124 20 C -0.076 4.076 21 C -0.104 4.104 22 C 0.091 3.909 23 C 0.201 3.799 24 N -0.233 5.233 25 N -0.038 5.038 26 N -0.232 5.232 27 H 0.473 0.527 28 N -0.286 5.286 29 H 0.048 0.952 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.101 0.899 33 H 0.037 0.963 34 H 0.263 0.737 35 H 0.413 0.587 36 H 0.149 0.851 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.534 11.246 4.854 12.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.176 3.824 4 H 0.061 0.939 5 C -0.558 4.558 6 H 0.074 0.926 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.203 1.203 13 N -0.846 5.846 14 S 2.780 3.220 15 O -0.960 6.960 16 O -0.950 6.950 17 C -0.717 4.717 18 C -0.041 4.041 19 C -0.144 4.144 20 C -0.094 4.094 21 C -0.125 4.125 22 C 0.087 3.913 23 C -0.079 4.079 24 N -0.107 5.107 25 N -0.035 5.035 26 N -0.077 5.077 27 H 0.327 0.673 28 N -0.138 5.138 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.119 0.881 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.249 0.751 36 H 0.166 0.834 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.281 10.885 5.428 12.166 hybrid contribution 2.449 0.569 -0.346 2.538 sum 2.168 11.453 5.082 12.716 Atomic orbital electron populations 1.21831 0.98381 0.98858 1.01313 1.21905 0.92576 0.99606 1.02677 1.18508 0.94699 0.90163 0.79074 0.93936 1.21363 0.91386 1.37872 1.05220 0.92573 1.24871 0.97855 0.95151 0.95735 1.69856 1.34670 1.38305 1.09460 0.86629 0.85980 0.78284 0.77266 1.20626 1.21103 1.20311 1.55406 1.65134 1.47077 1.16951 1.01871 0.73759 0.73388 0.73018 1.93554 1.47500 1.80508 1.74402 1.93549 1.86313 1.81207 1.33938 1.31345 1.07161 1.21073 1.12112 1.20956 0.98593 0.93757 0.90762 1.21394 0.96244 0.96712 1.00012 1.21280 0.94703 0.98385 0.95013 1.21183 1.00065 0.96302 0.94922 1.16554 0.91858 0.94796 0.88119 1.23607 0.92377 0.94110 0.97848 1.76136 1.17798 1.16635 1.00145 1.78885 0.96726 1.09292 1.18554 1.47638 1.23288 1.19730 1.17069 0.67312 1.74748 1.17798 1.21717 0.99545 0.93279 0.95117 0.93845 0.88066 0.94430 0.92694 0.75087 0.83372 0.84827 0.84881 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.24 37.16 0.34 -2.79 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.14 16 3 C 0.28 6.73 2.22 -69.08 -0.15 6.58 16 4 H 0.04 1.09 7.83 -51.93 -0.41 0.69 16 5 C -0.52 -13.43 8.84 -34.44 -0.30 -13.74 16 6 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 7 C 0.07 1.75 5.28 -17.82 -0.09 1.65 16 8 N -0.88 -23.90 11.28 55.43 0.63 -23.28 16 9 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -1.08 -23.14 3.70 -5.88 -0.02 -23.16 16 14 S 2.69 55.01 4.73 -107.50 -0.51 54.50 16 15 O -0.97 -20.92 14.93 -57.17 -0.85 -21.77 16 16 O -0.96 -20.56 14.88 -57.17 -0.85 -21.41 16 17 C -0.63 -11.80 5.85 -39.26 -0.23 -12.03 16 18 C -0.02 -0.35 9.54 -39.63 -0.38 -0.73 16 19 C -0.12 -1.64 10.04 -39.52 -0.40 -2.03 16 20 C -0.08 -0.95 10.03 -39.63 -0.40 -1.34 16 21 C -0.10 -1.52 9.70 -39.26 -0.38 -1.90 16 22 C 0.09 1.63 5.87 -104.89 -0.62 1.01 16 23 C 0.20 3.66 7.63 -156.30 -1.19 2.46 16 24 N -0.23 -4.45 5.69 32.16 0.18 -4.27 16 25 N -0.04 -0.62 13.47 60.35 0.81 0.19 16 26 N -0.23 -2.94 7.90 60.35 0.48 -2.47 16 27 H 0.47 3.30 8.96 -340.37 -3.05 0.25 16 28 N -0.29 -4.37 12.09 32.17 0.39 -3.98 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.91 6.47 -51.93 -0.34 0.57 16 32 H 0.10 2.60 5.92 -51.93 -0.31 2.29 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.41 8.51 7.68 -34.48 -0.26 8.24 16 36 H 0.15 2.24 7.34 -52.49 -0.39 1.86 16 37 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 39 H 0.14 1.71 7.89 -52.48 -0.41 1.29 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -33.20 337.99 -10.45 -43.65 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.82 Total: 7.27 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -3.95 Total: -26.00 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 2.46 Total: -56.96 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -1.70 Total: -43.18 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 55.01 SS G_CDS: -0.51 Total: 54.50 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.20 -10.45 -43.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590420295.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.915 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds