Wall clock time and date at job start Tue Mar 31 2020 19:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47606 * 2 1 4 4 H 1.09001 * 109.47226 * 305.76855 * 3 2 1 5 5 C 1.50699 * 109.47477 * 185.76820 * 3 2 1 6 6 H 1.07996 * 120.00168 * 239.99852 * 5 3 2 7 7 C 1.37877 * 119.99648 * 59.72819 * 5 3 2 8 8 N 1.31508 * 120.00216 * 0.27055 * 7 5 3 9 9 Si 1.86806 * 119.99791 * 180.27817 * 7 5 3 10 10 H 1.48493 * 109.47455 * 89.99659 * 9 7 5 11 11 H 1.48502 * 109.46831 * 209.99613 * 9 7 5 12 12 H 1.48503 * 109.46790 * 329.99049 * 9 7 5 13 13 N 1.46499 * 109.47065 * 65.76724 * 3 2 1 14 14 S 1.65609 * 119.99985 * 245.56936 * 13 3 2 15 15 O 1.42099 * 106.40083 * 51.36724 * 14 13 3 16 16 O 1.42102 * 106.40060 * 184.28718 * 14 13 3 17 17 C 1.76196 * 107.21857 * 297.82455 * 14 13 3 18 18 C 1.38052 * 120.05550 * 116.62525 * 17 14 13 19 19 C 1.38297 * 120.11712 * 180.02562 * 18 17 14 20 20 C 1.38335 * 120.23441 * 359.97438 * 19 18 17 21 21 C 1.38009 * 120.11947 * 0.02562 * 20 19 18 22 22 C 1.39279 * 120.06302 * 296.35655 * 17 14 13 23 23 C 1.48463 * 120.11407 * 0.02562 * 22 17 14 24 24 N 1.34049 * 126.67583 * 3.27782 * 23 22 17 25 25 N 1.28980 * 107.26392 * 179.82934 * 24 23 22 26 26 N 1.28724 * 108.95078 * 0.43698 * 25 24 23 27 27 H 0.97002 * 125.35078 * 179.72242 * 26 25 24 28 28 N 1.28878 * 109.31680 * 359.71884 * 26 25 24 29 29 H 1.09000 * 109.46872 * 63.24332 * 1 2 3 30 30 H 1.08995 * 109.47269 * 183.24832 * 1 2 3 31 31 H 1.09001 * 109.46726 * 303.24843 * 1 2 3 32 32 H 1.09005 * 109.47447 * 239.99503 * 2 1 3 33 33 H 1.09000 * 109.47131 * 119.99899 * 2 1 3 34 34 H 0.97002 * 120.00504 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00240 * 65.56893 * 13 3 2 36 36 H 1.08000 * 119.94516 * 359.97438 * 18 17 14 37 37 H 1.07995 * 119.88560 * 179.97438 * 19 18 17 38 38 H 1.08006 * 119.94151 * 179.97438 * 20 19 18 39 39 H 1.08003 * 120.05981 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5949 1.9853 -0.8338 5 6 3.5403 1.4448 -0.1428 6 1 4.1554 1.8859 0.6276 7 6 4.1278 0.8788 -1.2543 8 7 3.3789 0.3417 -2.1924 9 14 5.9878 0.8748 -1.4277 10 1 6.5395 -0.3599 -0.8143 11 1 6.3509 0.9173 -2.8670 12 1 6.5516 2.0640 -0.7397 13 7 1.6684 2.0918 1.2595 14 16 0.5987 3.3561 1.2551 15 8 -0.5369 2.9182 0.5218 16 8 0.5257 3.8245 2.5948 17 6 1.3290 4.6539 0.3135 18 6 0.7306 5.0817 -0.8547 19 6 1.3030 6.1000 -1.5951 20 6 2.4769 6.6955 -1.1697 21 6 3.0833 6.2755 -0.0033 22 6 2.5080 5.2539 0.7493 23 6 3.1530 4.8016 2.0076 24 7 2.7538 3.7922 2.7941 25 7 3.5823 3.7245 3.7802 26 7 4.4683 4.6486 3.6461 27 1 5.2027 4.8150 4.2575 28 7 4.2266 5.3182 2.5717 29 1 -0.3633 0.4627 -0.9176 30 1 -0.3633 -1.0260 0.0582 31 1 -0.3633 0.5635 0.8595 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7922 -0.0568 -2.9742 35 1 2.0489 1.7813 2.0960 36 1 -0.1857 4.6199 -1.1915 37 1 0.8319 6.4314 -2.5086 38 1 2.9200 7.4901 -1.7518 39 1 3.9996 6.7414 0.3281 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590420295.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:00 Heat of formation + Delta-G solvation = 75.498964 kcal Electronic energy + Delta-G solvation = -28672.580338 eV Core-core repulsion = 24745.468439 eV Total energy + Delta-G solvation = -3927.111899 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.47071 -40.17830 -38.19199 -37.55799 -36.66708 -35.43237 -34.65764 -34.07106 -32.32844 -32.08197 -31.58143 -28.48075 -25.96337 -25.65938 -24.78100 -23.90658 -22.77338 -21.80163 -20.54408 -20.08978 -19.00291 -18.56554 -18.12917 -17.92813 -17.31007 -17.08504 -16.55826 -15.87895 -15.72346 -15.29090 -15.21574 -14.78740 -14.76417 -14.58593 -14.24251 -13.60469 -13.47227 -13.35116 -13.11583 -13.05021 -12.96053 -12.94220 -12.66789 -12.56535 -12.45265 -12.31483 -12.05058 -11.98958 -11.93546 -11.75427 -11.60063 -11.44609 -11.21216 -10.47121 -10.35031 -9.82116 -9.78156 -8.07673 -6.20817 -0.60120 -0.23360 0.05532 0.22949 1.29275 1.38909 1.41112 1.41497 1.48602 2.26776 2.45702 2.53410 2.61879 2.98391 3.06952 3.18995 3.57828 3.94098 4.05819 4.14708 4.34676 4.38624 4.45808 4.56700 4.61404 4.70649 4.76070 4.87038 4.99681 5.08172 5.22009 5.23269 5.32367 5.42786 5.54853 5.63713 5.70476 5.82205 5.87250 6.13858 6.26659 6.58403 6.88929 7.07766 7.47149 8.95737 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009281 B = 0.006833 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.084999 B = 4096.846511 C = 4583.011070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.289 3.711 4 H 0.021 0.979 5 C -0.526 4.526 6 H 0.049 0.951 7 C 0.025 3.975 8 N -0.907 5.907 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.277 1.277 13 N -1.083 6.083 14 S 2.703 3.297 15 O -0.992 6.992 16 O -0.976 6.976 17 C -0.658 4.658 18 C -0.041 4.041 19 C -0.118 4.118 20 C -0.061 4.061 21 C -0.108 4.108 22 C 0.063 3.937 23 C 0.178 3.822 24 N -0.270 5.270 25 N -0.049 5.049 26 N -0.200 5.200 27 H 0.495 0.505 28 N -0.275 5.275 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.414 0.586 36 H 0.148 0.852 37 H 0.174 0.826 38 H 0.182 0.818 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.052 13.106 4.113 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C 0.184 3.816 4 H 0.039 0.961 5 C -0.565 4.565 6 H 0.067 0.933 7 C -0.175 4.175 8 N -0.546 5.546 9 Si 0.773 3.227 10 H -0.204 1.204 11 H -0.206 1.206 12 H -0.202 1.202 13 N -0.844 5.844 14 S 2.793 3.207 15 O -0.982 6.982 16 O -0.966 6.966 17 C -0.747 4.747 18 C -0.061 4.061 19 C -0.137 4.137 20 C -0.078 4.078 21 C -0.128 4.128 22 C 0.059 3.941 23 C -0.102 4.102 24 N -0.143 5.143 25 N -0.045 5.045 26 N -0.051 5.051 27 H 0.355 0.645 28 N -0.128 5.128 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.250 0.750 36 H 0.166 0.834 37 H 0.191 0.809 38 H 0.199 0.801 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.228 12.706 4.742 13.617 hybrid contribution 2.036 0.123 -0.107 2.042 sum 3.264 12.829 4.635 14.026 Atomic orbital electron populations 1.21746 0.96853 1.00269 1.00810 1.21814 0.93962 0.99172 1.01631 1.18215 0.93750 0.90190 0.79472 0.96073 1.21523 0.92288 1.37635 1.05075 0.93308 1.25502 1.01473 0.94979 0.95546 1.69966 1.36057 1.38821 1.09796 0.85751 0.81573 0.78154 0.77249 1.20390 1.20641 1.20173 1.55246 1.65115 1.48036 1.16040 1.01255 0.73257 0.73408 0.72794 1.93513 1.48774 1.81247 1.74652 1.93518 1.86562 1.81331 1.35144 1.30915 1.08709 1.21539 1.13520 1.21221 0.99044 0.95144 0.90663 1.21884 0.96235 0.95026 1.00582 1.21880 0.93686 0.98261 0.93989 1.21582 1.00711 0.95305 0.95238 1.16863 0.92150 0.96266 0.88836 1.23887 0.93286 0.94494 0.98502 1.76073 1.19207 1.17899 1.01168 1.78798 0.97238 1.10172 1.18252 1.47714 1.22833 1.18068 1.16463 0.64543 1.74691 1.16841 1.21459 0.99807 0.94200 0.92770 0.93833 0.90197 0.94221 0.92639 0.74966 0.83407 0.80869 0.80071 0.82438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.03 9.24 71.98 0.67 -5.37 16 2 C -0.13 -6.03 5.45 30.59 0.17 -5.87 16 3 C 0.29 14.26 2.22 44.24 0.10 14.36 16 4 H 0.02 1.14 7.83 -2.39 -0.02 1.12 16 5 C -0.53 -27.55 8.84 25.60 0.23 -27.32 16 6 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 7 C 0.03 1.33 5.28 84.66 0.45 1.78 16 8 N -0.91 -49.42 11.28 21.45 0.24 -49.18 16 9 Si 0.95 42.03 29.54 68.60 2.03 44.06 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 13 N -1.08 -47.78 3.70 -172.53 -0.64 -48.42 16 14 S 2.70 114.15 4.73 -56.49 -0.27 113.88 16 15 O -0.99 -44.39 14.93 -128.00 -1.91 -46.30 16 16 O -0.98 -43.24 14.88 -128.00 -1.90 -45.14 16 17 C -0.66 -24.81 5.85 22.48 0.13 -24.68 16 18 C -0.04 -1.32 9.54 22.24 0.21 -1.11 16 19 C -0.12 -2.76 10.04 22.31 0.22 -2.53 16 20 C -0.06 -1.27 10.03 22.24 0.22 -1.05 16 21 C -0.11 -2.89 9.70 22.48 0.22 -2.67 16 22 C 0.06 2.23 5.87 -20.04 -0.12 2.11 16 23 C 0.18 6.46 7.63 137.38 1.05 7.51 16 24 N -0.27 -10.47 5.69 -52.18 -0.30 -10.76 16 25 N -0.05 -1.58 13.47 37.02 0.50 -1.08 16 26 N -0.20 -4.81 7.90 37.02 0.29 -4.52 16 27 H 0.50 5.96 8.96 -347.53 -3.12 2.84 16 28 N -0.28 -8.03 12.09 -52.13 -0.63 -8.66 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.04 1.85 6.47 -2.39 -0.02 1.84 16 32 H 0.08 4.20 5.92 -2.38 -0.01 4.19 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 35 H 0.41 17.75 7.68 -96.74 -0.74 17.00 16 36 H 0.15 4.55 7.34 -2.91 -0.02 4.53 16 37 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.16 3.44 7.89 -2.91 -0.02 3.42 16 Total: -1.00 -72.94 337.99 -1.77 -74.72 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -2.73 Total: 26.23 kcal Atomic # 6 Polarization: -48.38 SS G_CDS: 3.54 Total: -44.84 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -0.53 Total: -122.61 kcal Atomic # 8 Polarization: -87.62 SS G_CDS: -3.82 Total: -91.44 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 114.15 SS G_CDS: -0.27 Total: 113.88 kcal Total: -72.94 -1.77 -74.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590420295.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.218 kcal (2) G-P(sol) polarization free energy of solvation -72.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds